Wall clock time and date at job start Mon Mar 30 2020 08:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46821 * 2 1 4 4 C 1.53001 * 109.47035 * 119.99724 * 2 1 3 5 5 C 1.50697 * 109.47161 * 185.00335 * 4 2 1 6 6 H 1.07995 * 119.99864 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99966 * 179.72516 * 5 4 2 8 8 N 1.31513 * 119.99824 * 180.27671 * 7 5 4 9 9 Si 1.86803 * 120.00110 * 0.27118 * 7 5 4 10 10 H 1.48501 * 109.46919 * 90.00324 * 9 7 5 11 11 H 1.48500 * 109.46943 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.47145 * 330.00187 * 9 7 5 13 13 O 1.42892 * 109.47288 * 239.99809 * 2 1 3 14 14 C 1.35752 * 117.00183 * 84.90494 * 13 2 1 15 15 C 1.38948 * 119.91281 * 354.53187 * 14 13 2 16 16 C 1.37709 * 120.11946 * 179.97438 * 15 14 13 17 17 C 1.39777 * 119.94905 * 0.02562 * 16 15 14 18 18 C 1.47464 * 120.08475 * 179.97438 * 17 16 15 19 19 O 1.21510 * 120.00127 * 359.97438 * 18 17 16 20 20 O 1.34752 * 120.00143 * 179.97438 * 18 17 16 21 21 C 1.39798 * 119.82718 * 359.97438 * 17 16 15 22 22 C 1.37875 * 119.87664 * 359.72344 * 21 17 16 23 23 F 1.35102 * 119.97029 * 180.27661 * 22 21 17 24 24 H 1.09000 * 109.47029 * 60.00520 * 1 2 3 25 25 H 1.09003 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47418 * 300.00462 * 1 2 3 27 27 H 1.09003 * 109.47397 * 65.00091 * 4 2 1 28 28 H 1.09000 * 109.47108 * 305.00069 * 4 2 1 29 29 H 0.97008 * 120.00134 * 180.02562 * 8 7 5 30 30 H 1.07995 * 119.93339 * 359.97438 * 15 14 13 31 31 H 1.07997 * 120.02110 * 180.02562 * 16 15 14 32 32 H 0.96697 * 117.00212 * 179.97438 * 20 18 17 33 33 H 1.08001 * 120.05814 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0788 -0.0854 0.5398 7 6 4.2298 -1.1881 2.3612 8 7 5.5400 -1.0905 2.4195 9 14 3.3009 -2.1031 3.6989 10 1 3.1757 -3.5346 3.3239 11 1 4.0411 -1.9903 4.9813 12 1 1.9476 -1.5120 3.8547 13 8 2.0063 -0.6736 -1.1667 14 6 2.1105 0.0612 -2.3033 15 6 1.6543 1.3735 -2.3243 16 6 1.7583 2.1230 -3.4749 17 6 2.3235 1.5626 -4.6239 18 6 2.4359 2.3623 -5.8578 19 8 2.0365 3.5098 -5.8766 20 8 2.9814 1.8206 -6.9645 21 6 2.7818 0.2421 -4.6004 22 6 2.6798 -0.4997 -3.4428 23 9 3.1272 -1.7742 -3.4163 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.7516 -1.7715 1.2057 28 1 1.6053 -0.2616 2.1370 29 1 6.0242 -1.4941 3.1569 30 1 1.2173 1.8063 -1.4366 31 1 1.4036 3.1429 -3.4893 32 1 3.0333 2.3835 -7.7490 33 1 3.2187 -0.1947 -5.4863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695832644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:16 Heat of formation + Delta-G solvation = -154.463993 kcal Electronic energy + Delta-G solvation = -19920.659628 eV Core-core repulsion = 16440.245826 eV Total energy + Delta-G solvation = -3480.413803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.56019 -40.55641 -39.70862 -37.39141 -36.18682 -33.67996 -31.95193 -30.95616 -29.98107 -28.14765 -24.77991 -23.48130 -22.87838 -21.29457 -20.26774 -18.55058 -18.09200 -17.33566 -16.84400 -16.36934 -15.88388 -15.87405 -15.48938 -14.84820 -14.64420 -14.31120 -13.94958 -13.58176 -12.95978 -12.88547 -12.49734 -12.32294 -12.24148 -12.14313 -11.87184 -11.75447 -11.46910 -11.13272 -10.83097 -10.74007 -10.29760 -10.00119 -9.75072 -9.33371 -9.03445 -8.60857 -8.12007 -6.09849 -4.09276 0.61622 1.10551 2.41716 2.87489 3.26398 3.32363 3.33826 3.37562 3.59402 4.23636 4.38308 4.61318 4.83575 4.99137 5.15871 5.23172 5.32637 5.38862 5.43601 5.66484 5.69337 5.89725 5.95656 6.02603 6.15368 6.28242 6.31032 6.38607 6.54036 6.92709 7.01969 7.59463 7.70576 7.75005 8.42953 8.93250 9.49881 11.03483 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.004516 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.006621 B = 6199.350314 C = 6458.598704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.521 4.521 6 H 0.073 0.927 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.879 3.121 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.273 6.273 14 C 0.163 3.837 15 C -0.207 4.207 16 C -0.017 4.017 17 C -0.165 4.165 18 C 0.537 3.463 19 O -0.521 6.521 20 O -0.513 6.513 21 C -0.057 4.057 22 C 0.048 3.952 23 F -0.125 7.125 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.413 0.587 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 4.823 -13.677 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.048 4.048 5 C -0.559 4.559 6 H 0.091 0.909 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.706 3.294 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.191 1.191 13 O -0.183 6.183 14 C 0.113 3.887 15 C -0.225 4.225 16 C -0.035 4.035 17 C -0.167 4.167 18 C 0.383 3.617 19 O -0.411 6.411 20 O -0.325 6.325 21 C -0.076 4.076 22 C 0.028 3.972 23 F -0.104 7.104 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.271 0.729 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.110 4.559 -13.147 16.632 hybrid contribution -0.211 -0.212 0.327 0.443 sum -9.321 4.347 -12.820 16.436 Atomic orbital electron populations 1.22474 0.96236 1.03079 1.02168 1.22825 0.92109 0.97503 0.84075 0.90714 1.19759 0.98318 0.96356 0.90331 1.20969 0.89230 1.36049 1.09646 0.90924 1.24987 0.94746 0.95679 0.97810 1.69906 1.06576 1.45056 1.32140 0.86805 0.80283 0.80783 0.81552 1.20118 1.21254 1.19066 1.86333 1.78434 1.37666 1.15893 1.19604 0.91005 0.90815 0.87276 1.21239 1.07552 0.93369 1.00374 1.21037 0.92703 0.99812 0.89955 1.18528 1.11303 0.94281 0.92550 1.20641 0.73265 0.84702 0.83129 1.90886 1.46812 1.18747 1.84664 1.84577 1.75643 1.49489 1.22783 1.21174 0.96748 0.92844 0.96881 1.16803 1.05293 0.81786 0.93314 1.91544 1.87173 1.34793 1.96864 0.92681 0.91610 0.90827 0.95562 0.94111 0.92600 0.83112 0.83867 0.72886 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 9.17 37.16 0.34 -2.25 16 2 C 0.09 1.66 2.17 -26.73 -0.06 1.60 16 3 H 0.07 1.32 6.30 -51.93 -0.33 0.99 16 4 C -0.01 -0.24 3.75 -27.88 -0.10 -0.34 16 5 C -0.52 -14.50 9.43 -34.44 -0.32 -14.82 16 6 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 13 O -0.27 -5.44 9.40 -18.96 -0.18 -5.61 16 14 C 0.16 2.77 6.61 -38.97 -0.26 2.51 16 15 C -0.21 -2.90 8.21 -39.51 -0.32 -3.22 16 16 C -0.02 -0.21 9.58 -39.20 -0.38 -0.59 16 17 C -0.17 -2.13 5.87 -104.98 -0.62 -2.74 16 18 C 0.54 6.46 8.26 34.49 0.28 6.74 16 19 O -0.52 -7.42 17.12 -19.27 -0.33 -7.75 16 20 O -0.51 -4.54 12.67 -40.63 -0.51 -5.06 16 21 C -0.06 -0.76 9.58 -39.13 -0.38 -1.13 16 22 C 0.05 0.78 7.30 -39.37 -0.29 0.49 16 23 F -0.13 -2.26 17.10 2.25 0.04 -2.22 16 24 H 0.05 0.67 6.89 -51.93 -0.36 0.31 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.60 7.58 -51.93 -0.39 0.21 16 28 H 0.04 0.88 7.19 -51.93 -0.37 0.51 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.15 1.88 5.40 -52.49 -0.28 1.60 16 31 H 0.14 1.60 7.64 -52.49 -0.40 1.20 16 32 H 0.41 1.68 9.11 45.56 0.42 2.10 16 33 H 0.15 1.69 7.60 -52.49 -0.40 1.29 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -33.13 294.20 -5.20 -38.32 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -2.55 Total: -0.01 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.20 Total: -11.85 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.77 Total: -26.68 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.02 Total: -18.43 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.13 -5.20 -38.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695832644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.143 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds