Wall clock time and date at job start Mon Mar 30 2020 08:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 109.46317 * 2 1 4 4 C 1.52996 * 109.47013 * 239.99778 * 2 1 3 5 5 C 1.50707 * 109.46468 * 175.00145 * 4 2 1 6 6 H 1.07996 * 120.00518 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99551 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47436 * 59.99347 * 9 7 5 11 11 H 1.48500 * 109.47576 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46996 * 299.99668 * 9 7 5 13 13 O 1.42900 * 109.46777 * 119.99575 * 2 1 3 14 14 C 1.35911 * 117.00258 * 275.37887 * 13 2 1 15 15 C 1.38813 * 119.96883 * 185.35908 * 14 13 2 16 16 C 1.38457 * 120.22760 * 179.97438 * 15 14 13 17 17 F 1.35100 * 119.92363 * 180.02562 * 16 15 14 18 18 C 1.38237 * 120.15915 * 0.02562 * 16 15 14 19 19 C 1.39587 * 119.93069 * 0.02562 * 18 16 15 20 20 C 1.47747 * 120.11155 * 180.02562 * 19 18 16 21 21 O 1.21467 * 120.00461 * 179.97438 * 20 19 18 22 22 O 1.34713 * 120.00058 * 0.02562 * 20 19 18 23 23 C 1.38458 * 119.96451 * 5.08538 * 14 13 2 24 24 H 1.09000 * 109.46563 * 60.00029 * 1 2 3 25 25 H 1.08993 * 109.46698 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47147 * 300.00086 * 1 2 3 27 27 H 1.09000 * 109.47494 * 55.00521 * 4 2 1 28 28 H 1.08998 * 109.47169 * 294.99685 * 4 2 1 29 29 H 0.97004 * 119.99669 * 180.02562 * 8 7 5 30 30 H 1.07998 * 119.88731 * 359.97438 * 15 14 13 31 31 H 1.08007 * 120.03160 * 179.97438 * 18 16 15 32 32 H 0.96701 * 117.00380 * 180.02562 * 22 20 19 33 33 H 1.07998 * 120.08335 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3125 6 1 4.0790 -0.0855 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5765 -1.8370 -3.2998 9 14 6.0921 -1.0603 -2.4371 10 1 6.6847 -1.6862 -1.2279 11 1 6.5872 -1.7604 -3.6495 12 1 6.4845 0.3708 -2.4965 13 8 2.0064 -0.6736 1.1668 14 6 2.1050 0.0608 2.3062 15 6 2.6643 -0.4998 3.4463 16 6 2.7679 0.2436 4.6097 17 9 3.3138 -0.3080 5.7156 18 6 2.3141 1.5489 4.6426 19 6 1.7496 2.1190 3.5003 20 6 1.2638 3.5140 3.5307 21 8 0.7733 4.0082 2.5355 22 8 1.3658 4.2382 4.6620 23 6 1.6526 1.3692 2.3270 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6055 -0.2618 -2.1370 28 1 1.7518 -1.7715 -1.2055 29 1 4.0610 -2.2438 -4.0352 30 1 3.0199 -1.5194 3.4257 31 1 2.3956 2.1269 5.5514 32 1 1.0339 5.1460 4.6336 33 1 1.2211 1.8070 1.4390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:19 Heat of formation + Delta-G solvation = -158.403958 kcal Electronic energy + Delta-G solvation = -19926.999892 eV Core-core repulsion = 16446.415240 eV Total energy + Delta-G solvation = -3480.584652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.97747 -40.65700 -39.62715 -37.20583 -36.26724 -33.61522 -31.97156 -30.84470 -29.75388 -27.53806 -25.12339 -23.66499 -22.64293 -21.51886 -20.26824 -18.58929 -18.06140 -16.61991 -16.44819 -16.20485 -16.11886 -15.92161 -15.80943 -15.53675 -14.67560 -14.50225 -13.97754 -13.51838 -13.03622 -12.88674 -12.30106 -12.20167 -11.95530 -11.83600 -11.74693 -11.49504 -11.37395 -11.06658 -10.82738 -10.76041 -10.51965 -10.16472 -9.49140 -9.21624 -9.01222 -8.43378 -8.15677 -6.06559 -4.08761 0.47114 1.17718 2.38515 2.74035 3.31705 3.35932 3.39081 3.44654 3.59008 4.22017 4.42084 4.82118 4.89616 4.94585 5.09160 5.29735 5.33747 5.49869 5.57556 5.63946 5.85445 5.92196 6.04534 6.09724 6.19841 6.27006 6.51815 6.59518 6.64434 7.37456 7.48350 7.67929 7.88055 7.89309 8.28092 8.94223 9.55115 11.04653 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.018306 B = 0.005192 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.166467 B = 5391.322569 C = 5872.315862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.067 0.933 4 C 0.026 3.974 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 O -0.279 6.279 14 C 0.173 3.827 15 C -0.162 4.162 16 C 0.126 3.874 17 F -0.133 7.133 18 C -0.151 4.151 19 C -0.064 4.064 20 C 0.530 3.470 21 O -0.505 6.505 22 O -0.511 6.511 23 C -0.162 4.162 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.414 0.586 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 7.790 15.346 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.027 3.973 3 H 0.085 0.915 4 C -0.010 4.010 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 O -0.191 6.191 14 C 0.124 3.876 15 C -0.182 4.182 16 C 0.107 3.893 17 F -0.111 7.111 18 C -0.170 4.170 19 C -0.065 4.065 20 C 0.374 3.626 21 O -0.393 6.393 22 O -0.323 6.323 23 C -0.181 4.181 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.273 0.727 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.960 7.188 14.891 17.262 hybrid contribution 0.864 0.717 -0.014 1.123 sum -4.096 7.904 14.877 17.337 Atomic orbital electron populations 1.22433 0.96517 1.02834 1.01871 1.23062 0.92206 0.97364 0.84657 0.91496 1.19281 0.96661 0.96568 0.88524 1.21068 0.91593 1.34877 1.08158 0.92632 1.24967 0.98523 0.95126 0.95580 1.69936 1.35745 1.35705 1.12041 0.86637 0.85562 0.78274 0.77460 1.20142 1.21218 1.20227 1.86349 1.79272 1.37743 1.15761 1.18619 0.91695 0.89326 0.87954 1.20592 1.04501 1.02603 0.90504 1.17037 0.97703 0.91631 0.82965 1.91520 1.83301 1.85626 1.50695 1.21114 1.02091 0.94224 0.99575 1.18444 1.02956 0.90574 0.94537 1.20756 0.75196 0.86444 0.80191 1.90917 1.41529 1.71767 1.35106 1.84557 1.78089 1.30959 1.38654 1.21570 1.03725 0.93904 0.98867 0.90946 0.91645 0.93216 0.94029 0.95080 0.92798 0.83151 0.83493 0.72679 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.17 37.16 0.34 -2.58 16 2 C 0.08 1.63 2.17 -26.73 -0.06 1.57 16 3 H 0.07 1.30 6.31 -51.93 -0.33 0.98 16 4 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 5 C -0.52 -14.29 8.88 -34.44 -0.31 -14.59 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 O -0.28 -5.53 9.55 -19.46 -0.19 -5.71 16 14 C 0.17 2.88 6.59 -39.29 -0.26 2.62 16 15 C -0.16 -2.41 9.95 -39.29 -0.39 -2.80 16 16 C 0.13 1.68 7.29 -39.50 -0.29 1.39 16 17 F -0.13 -1.73 17.26 2.25 0.04 -1.69 16 18 C -0.15 -1.86 9.59 -39.08 -0.37 -2.23 16 19 C -0.06 -0.87 5.87 -105.01 -0.62 -1.48 16 20 C 0.53 6.71 8.27 34.62 0.29 7.00 16 21 O -0.50 -7.78 17.13 -19.24 -0.33 -8.11 16 22 O -0.51 -4.51 12.68 -40.53 -0.51 -5.02 16 23 C -0.16 -2.50 7.77 -39.00 -0.30 -2.81 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.72 6.89 -51.93 -0.36 0.36 16 27 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.15 1.49 7.61 -52.48 -0.40 1.09 16 32 H 0.41 1.69 9.11 45.56 0.42 2.10 16 33 H 0.15 2.44 5.00 -52.49 -0.26 2.17 16 LS Contribution 298.07 15.07 4.49 4.49 Total: -1.00 -31.24 298.07 -5.57 -36.81 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -2.59 Total: 0.01 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.20 Total: -11.81 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.03 Total: -18.84 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.24 -5.57 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.594 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds