Wall clock time and date at job start Mon Mar 30 2020 08:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 109.46317 * 2 1 4 4 C 1.52996 * 109.47013 * 239.99778 * 2 1 3 5 5 C 1.50707 * 109.46468 * 175.00145 * 4 2 1 6 6 H 1.07996 * 120.00518 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99551 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47436 * 59.99347 * 9 7 5 11 11 H 1.48500 * 109.47576 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46996 * 299.99668 * 9 7 5 13 13 O 1.42900 * 109.46777 * 119.99575 * 2 1 3 14 14 C 1.35911 * 117.00258 * 275.37887 * 13 2 1 15 15 C 1.38813 * 119.96883 * 185.35908 * 14 13 2 16 16 C 1.38457 * 120.22760 * 179.97438 * 15 14 13 17 17 F 1.35100 * 119.92363 * 180.02562 * 16 15 14 18 18 C 1.38237 * 120.15915 * 0.02562 * 16 15 14 19 19 C 1.39587 * 119.93069 * 0.02562 * 18 16 15 20 20 C 1.47747 * 120.11155 * 180.02562 * 19 18 16 21 21 O 1.21467 * 120.00461 * 179.97438 * 20 19 18 22 22 O 1.34713 * 120.00058 * 0.02562 * 20 19 18 23 23 C 1.38458 * 119.96451 * 5.08538 * 14 13 2 24 24 H 1.09000 * 109.46563 * 60.00029 * 1 2 3 25 25 H 1.08993 * 109.46698 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47147 * 300.00086 * 1 2 3 27 27 H 1.09000 * 109.47494 * 55.00521 * 4 2 1 28 28 H 1.08998 * 109.47169 * 294.99685 * 4 2 1 29 29 H 0.97004 * 119.99669 * 180.02562 * 8 7 5 30 30 H 1.07998 * 119.88731 * 359.97438 * 15 14 13 31 31 H 1.08007 * 120.03160 * 179.97438 * 18 16 15 32 32 H 0.96701 * 117.00380 * 180.02562 * 22 20 19 33 33 H 1.07998 * 120.08335 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3125 6 1 4.0790 -0.0855 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5765 -1.8370 -3.2998 9 14 6.0921 -1.0603 -2.4371 10 1 6.6847 -1.6862 -1.2279 11 1 6.5872 -1.7604 -3.6495 12 1 6.4845 0.3708 -2.4965 13 8 2.0064 -0.6736 1.1668 14 6 2.1050 0.0608 2.3062 15 6 2.6643 -0.4998 3.4463 16 6 2.7679 0.2436 4.6097 17 9 3.3138 -0.3080 5.7156 18 6 2.3141 1.5489 4.6426 19 6 1.7496 2.1190 3.5003 20 6 1.2638 3.5140 3.5307 21 8 0.7733 4.0082 2.5355 22 8 1.3658 4.2382 4.6620 23 6 1.6526 1.3692 2.3270 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6055 -0.2618 -2.1370 28 1 1.7518 -1.7715 -1.2055 29 1 4.0610 -2.2438 -4.0352 30 1 3.0199 -1.5194 3.4257 31 1 2.3956 2.1269 5.5514 32 1 1.0339 5.1460 4.6336 33 1 1.2211 1.8070 1.4390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:18 Heat of formation + Delta-G solvation = -177.947747 kcal Electronic energy + Delta-G solvation = -19927.847375 eV Core-core repulsion = 16446.415240 eV Total energy + Delta-G solvation = -3481.432135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.03435 -41.74435 -40.80797 -38.45555 -37.15615 -35.49816 -33.64723 -32.09767 -30.93649 -29.37954 -26.18233 -25.40842 -24.08351 -22.55481 -21.73779 -19.77115 -19.03615 -18.55099 -17.66191 -17.44102 -17.36333 -16.96729 -16.89917 -16.54085 -16.49299 -15.99383 -15.28517 -14.61214 -14.49587 -14.15433 -13.88214 -13.67420 -13.50066 -13.24315 -12.94198 -12.88713 -12.64107 -12.63059 -12.51598 -12.25484 -11.87959 -11.82408 -11.35750 -11.12724 -10.58789 -10.14138 -9.39456 -8.21393 -6.30569 -0.62072 0.05316 1.34827 1.39263 1.41332 1.49225 1.83134 2.15248 2.40020 2.46425 3.10656 3.14694 3.72854 3.76690 3.87242 3.98027 4.04233 4.16444 4.26294 4.42221 4.49233 4.77407 4.81316 4.95543 4.97604 5.12143 5.17383 5.33796 5.42714 5.49087 5.57812 5.75425 6.16174 6.44429 6.80694 6.89716 7.37125 8.89995 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.018306 B = 0.005192 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.166467 B = 5391.322569 C = 5872.315862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.534 4.534 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.268 1.268 13 O -0.306 6.306 14 C 0.147 3.853 15 C -0.165 4.165 16 C 0.130 3.870 17 F -0.128 7.128 18 C -0.126 4.126 19 C -0.068 4.068 20 C 0.541 3.459 21 O -0.537 6.537 22 O -0.494 6.494 23 C -0.167 4.167 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.004 0.996 29 H 0.265 0.735 30 H 0.153 0.847 31 H 0.178 0.822 32 H 0.438 0.562 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 9.205 17.549 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.008 4.008 5 C -0.572 4.572 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.193 1.193 13 O -0.220 6.220 14 C 0.100 3.900 15 C -0.184 4.184 16 C 0.110 3.890 17 F -0.106 7.106 18 C -0.145 4.145 19 C -0.069 4.069 20 C 0.385 3.615 21 O -0.429 6.429 22 O -0.309 6.309 23 C -0.186 4.186 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.195 0.805 32 H 0.301 0.699 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.408 8.634 17.137 19.689 hybrid contribution 0.690 0.326 -0.537 0.934 sum -3.718 8.961 16.601 19.228 Atomic orbital electron populations 1.22336 0.93856 1.03198 1.03289 1.22710 0.94182 0.96177 0.83284 0.91523 1.19121 0.95531 0.95365 0.90806 1.21438 0.93208 1.34578 1.08003 0.92880 1.25826 1.03328 0.94805 0.95262 1.70053 1.37575 1.36636 1.12682 0.85615 0.79862 0.78656 0.77646 1.19617 1.20577 1.19283 1.86247 1.80474 1.38687 1.16557 1.18735 0.93800 0.89999 0.87454 1.20698 1.04104 1.03024 0.90596 1.16990 0.97584 0.91861 0.82517 1.91540 1.83180 1.85645 1.50239 1.21384 0.99491 0.93612 0.99982 1.18549 1.02891 0.91296 0.94180 1.20490 0.74388 0.86116 0.80480 1.90918 1.43089 1.72344 1.36507 1.84493 1.77482 1.32503 1.36376 1.21515 1.03937 0.93601 0.99542 0.89998 0.91797 0.91235 0.95493 0.97779 0.92664 0.82914 0.80465 0.69929 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 9.17 71.99 0.66 -4.87 16 2 C 0.09 3.73 2.17 30.60 0.07 3.79 16 3 H 0.07 2.67 6.31 -2.38 -0.02 2.65 16 4 C 0.03 1.47 4.68 29.85 0.14 1.61 16 5 C -0.53 -30.15 8.88 25.60 0.23 -29.92 16 6 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 9 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 O -0.31 -12.41 9.55 -92.54 -0.88 -13.30 16 14 C 0.15 4.89 6.59 22.46 0.15 5.04 16 15 C -0.16 -4.73 9.95 22.46 0.22 -4.51 16 16 C 0.13 3.14 7.29 22.32 0.16 3.31 16 17 F -0.13 -2.96 17.26 44.97 0.78 -2.19 16 18 C -0.13 -2.68 9.59 22.60 0.22 -2.46 16 19 C -0.07 -1.69 5.87 -20.11 -0.12 -1.81 16 20 C 0.54 12.28 8.27 70.34 0.58 12.86 16 21 O -0.54 -15.71 17.13 19.94 0.34 -15.37 16 22 O -0.49 -6.79 12.68 -56.23 -0.71 -7.50 16 23 C -0.17 -5.04 7.77 22.65 0.18 -4.87 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 1.98 6.89 -2.39 -0.02 1.96 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 31 H 0.18 2.72 7.61 -2.91 -0.02 2.70 16 32 H 0.44 1.84 9.11 -74.06 -0.67 1.17 16 33 H 0.15 4.59 5.00 -2.91 -0.01 4.57 16 Total: -1.00 -67.86 298.07 5.26 -62.60 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.48 Total: 5.71 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 2.95 Total: -21.02 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.26 Total: -36.17 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.86 5.26 -62.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.350 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds