Wall clock time and date at job start Mon Mar 30 2020 08:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 7 7 C 1.38246 * 120.11013 * 359.76602 * 6 5 4 8 8 S 1.76204 * 119.97139 * 179.97438 * 7 6 5 9 9 O 1.42097 * 103.00056 * 156.17128 * 8 7 6 10 10 C 1.81397 * 102.99953 * 270.02308 * 8 7 6 11 11 H 1.08996 * 109.47198 * 294.99774 * 10 8 7 12 12 C 1.53001 * 109.47168 * 54.99835 * 10 8 7 13 13 C 1.53002 * 109.47112 * 175.00132 * 10 8 7 14 14 C 1.50692 * 109.47201 * 64.99947 * 13 10 8 15 15 H 1.08002 * 120.00105 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00245 * 180.02562 * 14 13 10 17 17 N 1.31519 * 119.99633 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00433 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47140 * 89.99456 * 18 16 14 20 20 H 1.48502 * 109.47135 * 209.99940 * 18 16 14 21 21 H 1.48503 * 109.46670 * 329.99337 * 18 16 14 22 22 C 1.38159 * 120.05555 * 359.97438 * 7 6 5 23 23 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.08007 * 119.97088 * 180.24901 * 5 4 3 28 28 H 1.08001 * 119.94728 * 179.74503 * 6 5 4 29 29 H 1.08997 * 109.47590 * 300.00050 * 12 10 8 30 30 H 1.09004 * 109.46780 * 60.00465 * 12 10 8 31 31 H 1.09005 * 109.47004 * 180.02562 * 12 10 8 32 32 H 1.09003 * 109.47404 * 185.00171 * 13 10 8 33 33 H 1.09002 * 109.46798 * 304.99471 * 13 10 8 34 34 H 0.97004 * 119.99863 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.02917 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 0.0000 9 8 6.2028 1.3645 0.5593 10 6 6.2227 2.6347 -1.7675 11 1 5.9318 1.6865 -2.2196 12 6 5.4685 3.7776 -2.4501 13 6 7.7286 2.8418 -1.9413 14 6 8.4672 1.6555 -1.3772 15 1 7.9175 0.8360 -0.9382 16 6 9.8447 1.6168 -1.4205 17 7 10.5141 2.6150 -1.9546 18 14 10.7603 0.1460 -0.7219 19 1 10.9458 -0.8727 -1.7862 20 1 12.0871 0.5827 -0.2178 21 1 9.9756 -0.4410 0.3939 22 6 3.4311 1.2849 0.0001 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 -0.0006 28 1 3.7922 4.6381 0.0002 29 1 4.3957 3.6301 -2.3263 30 1 5.7595 4.7259 -1.9980 31 1 5.7129 3.7910 -3.5123 32 1 7.9614 2.9443 -3.0012 33 1 8.0344 3.7450 -1.4132 34 1 11.4833 2.5876 -1.9854 35 1 4.0206 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695890181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:34 Heat of formation + Delta-G solvation = -59.375161 kcal Electronic energy + Delta-G solvation = -18094.585403 eV Core-core repulsion = 15184.508137 eV Total energy + Delta-G solvation = -2910.077265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03853 -37.33811 -34.94038 -34.47579 -32.02000 -31.07348 -30.13740 -27.40775 -27.35129 -23.28642 -22.71315 -22.27304 -20.61626 -18.56923 -16.45015 -16.33718 -16.25278 -15.95659 -15.83607 -15.03574 -14.64182 -14.39020 -13.95514 -13.53722 -13.42076 -12.66401 -12.47979 -12.32467 -12.00401 -11.83859 -11.56974 -11.44406 -11.22703 -11.12361 -10.85370 -10.65885 -10.52496 -10.37957 -9.70084 -9.21054 -9.08752 -8.88525 -8.35489 -8.21086 -7.56246 -5.99368 -4.01679 1.06339 1.47390 2.47297 3.17633 3.38217 3.43588 3.44662 3.55697 3.83772 4.53425 4.64527 4.72190 4.89534 4.94415 4.95686 5.23854 5.27511 5.38330 5.47821 5.59614 5.73696 5.84837 5.98919 6.02170 6.27587 6.34186 6.46685 6.49430 6.63249 6.67332 6.83313 7.37411 7.58567 7.61588 8.02401 8.36728 9.09937 9.65945 11.11293 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.005111 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.601715 B = 5476.838155 C = 6045.681791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.106 3.894 4 C -0.187 4.187 5 C -0.102 4.102 6 C -0.084 4.084 7 C -0.417 4.417 8 S 1.329 4.671 9 O -0.837 6.837 10 C -0.396 4.396 11 H 0.080 0.920 12 C -0.125 4.125 13 C 0.047 3.953 14 C -0.538 4.538 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.895 5.895 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.269 1.269 22 C -0.086 4.086 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.414 5.418 3.500 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.060 3.940 4 C -0.206 4.206 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.510 4.510 8 S 1.525 4.475 9 O -0.832 6.832 10 C -0.515 4.515 11 H 0.098 0.902 12 C -0.183 4.183 13 C 0.008 3.992 14 C -0.576 4.576 15 H 0.088 0.912 16 C -0.138 4.138 17 N -0.535 5.535 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.105 4.105 23 H 0.116 0.884 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.585 5.280 4.266 19.786 hybrid contribution -0.636 -2.606 -0.895 2.828 sum -19.221 2.675 3.370 19.697 Atomic orbital electron populations 1.23017 0.78826 1.03771 1.01086 1.86113 1.21039 1.27131 1.89002 1.19184 0.92526 0.84145 0.98097 1.21286 0.99644 0.92666 1.07014 1.21029 0.94993 0.96742 0.99331 1.20789 0.93258 0.97415 0.98858 1.28534 1.22054 0.95475 1.04910 1.69496 0.77890 1.10690 0.89379 1.93086 1.75083 1.45569 1.69465 1.27459 1.05685 1.02530 1.15783 0.90162 1.21541 0.98280 0.97424 1.01089 1.18864 0.84225 0.97509 0.98570 1.21588 0.91872 1.05247 1.38877 0.91159 1.24941 0.97715 0.96071 0.95057 1.69962 1.07324 1.31158 1.45027 0.86636 0.79007 0.83083 0.79770 1.20758 1.21127 1.19355 1.20514 0.91262 0.98713 1.00044 0.88399 0.92816 0.92828 0.85737 0.85570 0.84547 0.93406 0.91788 0.92494 0.95236 0.95383 0.92970 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.61 10.50 -19.44 -0.20 -4.81 16 3 C 0.11 1.62 6.69 -39.22 -0.26 1.35 16 4 C -0.19 -2.27 9.04 -39.43 -0.36 -2.62 16 5 C -0.10 -1.13 10.04 -39.60 -0.40 -1.52 16 6 C -0.08 -1.02 8.53 -39.56 -0.34 -1.36 16 7 C -0.42 -6.61 4.80 -39.61 -0.19 -6.80 16 8 S 1.33 24.19 12.71 -107.50 -1.37 22.82 16 9 O -0.84 -20.52 15.25 -35.23 -0.54 -21.06 16 10 C -0.40 -7.89 2.81 -26.73 -0.08 -7.97 16 11 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 12 C -0.12 -1.90 8.84 37.16 0.33 -1.57 16 13 C 0.05 1.16 4.45 -27.89 -0.12 1.03 16 14 C -0.54 -15.56 8.39 -34.44 -0.29 -15.85 16 15 H 0.07 2.14 6.35 -52.49 -0.33 1.80 16 16 C 0.06 1.87 5.46 -17.82 -0.10 1.77 16 17 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.89 22.91 29.54 -169.99 -5.02 17.89 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 22 C -0.09 -1.52 9.38 -39.44 -0.37 -1.89 16 23 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 25 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 26 H 0.12 1.14 6.30 -52.49 -0.33 0.81 16 27 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 28 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.05 0.64 6.37 -51.93 -0.33 0.31 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 2.67 7.45 -52.48 -0.39 2.28 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -36.60 305.91 -7.66 -44.26 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.70 Total: -3.59 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: -1.18 Total: -34.17 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.74 Total: -25.87 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 24.19 SS G_CDS: -1.37 Total: 22.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.60 -7.66 -44.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.110 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds