Wall clock time and date at job start Mon Mar 30 2020 08:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 7 7 C 1.38246 * 120.11013 * 359.76602 * 6 5 4 8 8 S 1.76204 * 119.97139 * 179.97438 * 7 6 5 9 9 O 1.42097 * 103.00056 * 156.17128 * 8 7 6 10 10 C 1.81397 * 102.99953 * 270.02308 * 8 7 6 11 11 H 1.08996 * 109.47198 * 294.99774 * 10 8 7 12 12 C 1.53001 * 109.47168 * 54.99835 * 10 8 7 13 13 C 1.53002 * 109.47112 * 175.00132 * 10 8 7 14 14 C 1.50692 * 109.47201 * 64.99947 * 13 10 8 15 15 H 1.08002 * 120.00105 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00245 * 180.02562 * 14 13 10 17 17 N 1.31519 * 119.99633 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00433 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47140 * 89.99456 * 18 16 14 20 20 H 1.48502 * 109.47135 * 209.99940 * 18 16 14 21 21 H 1.48503 * 109.46670 * 329.99337 * 18 16 14 22 22 C 1.38159 * 120.05555 * 359.97438 * 7 6 5 23 23 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.08007 * 119.97088 * 180.24901 * 5 4 3 28 28 H 1.08001 * 119.94728 * 179.74503 * 6 5 4 29 29 H 1.08997 * 109.47590 * 300.00050 * 12 10 8 30 30 H 1.09004 * 109.46780 * 60.00465 * 12 10 8 31 31 H 1.09005 * 109.47004 * 180.02562 * 12 10 8 32 32 H 1.09003 * 109.47404 * 185.00171 * 13 10 8 33 33 H 1.09002 * 109.46798 * 304.99471 * 13 10 8 34 34 H 0.97004 * 119.99863 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.02917 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 0.0000 9 8 6.2028 1.3645 0.5593 10 6 6.2227 2.6347 -1.7675 11 1 5.9318 1.6865 -2.2196 12 6 5.4685 3.7776 -2.4501 13 6 7.7286 2.8418 -1.9413 14 6 8.4672 1.6555 -1.3772 15 1 7.9175 0.8360 -0.9382 16 6 9.8447 1.6168 -1.4205 17 7 10.5141 2.6150 -1.9546 18 14 10.7603 0.1460 -0.7219 19 1 10.9458 -0.8727 -1.7862 20 1 12.0871 0.5827 -0.2178 21 1 9.9756 -0.4410 0.3939 22 6 3.4311 1.2849 0.0001 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 -0.0006 28 1 3.7922 4.6381 0.0002 29 1 4.3957 3.6301 -2.3263 30 1 5.7595 4.7259 -1.9980 31 1 5.7129 3.7910 -3.5123 32 1 7.9614 2.9443 -3.0012 33 1 8.0344 3.7450 -1.4132 34 1 11.4833 2.5876 -1.9854 35 1 4.0206 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695890181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:33 Heat of formation + Delta-G solvation = -85.597846 kcal Electronic energy + Delta-G solvation = -18095.722504 eV Core-core repulsion = 15184.508137 eV Total energy + Delta-G solvation = -2911.214366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04782 -38.34942 -36.67822 -36.33835 -34.01812 -32.14999 -31.18889 -29.21063 -28.18562 -25.20574 -23.80924 -23.35682 -22.27486 -19.66453 -18.56385 -17.86535 -17.27086 -16.98889 -16.74918 -16.65571 -16.43958 -15.90550 -15.24544 -14.83572 -14.52695 -14.15127 -14.01971 -13.62970 -13.42034 -13.23239 -13.22375 -12.72864 -12.66201 -12.58275 -12.43938 -12.24897 -12.07888 -11.93005 -11.54435 -11.14753 -10.76750 -10.53018 -10.19518 -9.29205 -9.12454 -8.25331 -6.32836 -0.07538 0.43580 1.07949 1.29552 1.30770 1.45640 1.98986 2.36186 2.37269 2.71815 3.06191 3.18769 3.81037 4.01726 4.17966 4.21831 4.33217 4.37962 4.40037 4.46201 4.59751 4.64700 4.69921 4.89148 5.12317 5.15895 5.24017 5.37408 5.38553 5.40688 5.49079 5.60877 5.76426 5.79355 6.19991 6.40962 6.83278 7.36911 8.85155 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.005111 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.601715 B = 5476.838155 C = 6045.681791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.352 6.352 3 C 0.093 3.907 4 C -0.175 4.175 5 C -0.087 4.087 6 C -0.075 4.075 7 C -0.427 4.427 8 S 1.376 4.624 9 O -0.914 6.914 10 C -0.397 4.397 11 H 0.044 0.956 12 C -0.120 4.120 13 C 0.050 3.950 14 C -0.557 4.557 15 H 0.044 0.956 16 C 0.019 3.981 17 N -0.916 5.916 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.264 1.264 21 H -0.285 1.285 22 C -0.131 4.131 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.162 0.838 27 H 0.178 0.822 28 H 0.183 0.817 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.006 0.994 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 8.189 3.713 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.267 6.267 3 C 0.047 3.953 4 C -0.194 4.194 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.523 4.523 8 S 1.576 4.424 9 O -0.910 6.910 10 C -0.515 4.515 11 H 0.063 0.937 12 C -0.178 4.178 13 C 0.012 3.988 14 C -0.595 4.595 15 H 0.062 0.938 16 C -0.180 4.180 17 N -0.556 5.556 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.189 1.189 21 H -0.211 1.211 22 C -0.151 4.151 23 H 0.131 0.869 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.179 0.821 27 H 0.196 0.804 28 H 0.200 0.800 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.411 8.049 4.462 23.305 hybrid contribution 0.020 -3.464 -0.954 3.593 sum -21.391 4.585 3.508 22.156 Atomic orbital electron populations 1.23376 0.76014 1.05544 1.02690 1.86071 1.24046 1.27511 1.89089 1.19269 0.91750 0.85731 0.98593 1.21775 1.01378 0.91718 1.04497 1.21648 0.94624 0.98089 0.96170 1.21371 0.94134 0.97455 0.96452 1.27905 1.19708 0.96654 1.08073 1.68310 0.79107 1.08193 0.86825 1.92965 1.78503 1.48290 1.71224 1.27398 1.03213 1.03040 1.17831 0.93689 1.21574 0.98970 0.96740 1.00498 1.18734 0.87292 0.96115 0.96696 1.21833 0.92571 1.06056 1.39042 0.93820 1.25598 0.98469 0.98445 0.95482 1.70007 1.07835 1.32210 1.45572 0.85855 0.78467 0.80492 0.78758 1.19941 1.18881 1.21071 1.20339 0.92874 0.97801 1.04081 0.86871 0.91027 0.91122 0.82080 0.80426 0.79986 0.90993 0.88152 0.92935 0.97536 0.94639 0.92395 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.35 -10.21 10.50 -92.48 -0.97 -11.18 16 3 C 0.09 2.75 6.69 22.50 0.15 2.90 16 4 C -0.18 -3.49 9.04 22.37 0.20 -3.28 16 5 C -0.09 -1.39 10.04 22.25 0.22 -1.17 16 6 C -0.08 -1.49 8.53 22.28 0.19 -1.30 16 7 C -0.43 -13.33 4.80 22.25 0.11 -13.23 16 8 S 1.38 51.78 12.71 -56.49 -0.72 51.07 16 9 O -0.91 -48.54 15.25 -148.98 -2.27 -50.81 16 10 C -0.40 -16.34 2.81 30.60 0.09 -16.25 16 11 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 12 C -0.12 -3.40 8.84 71.98 0.64 -2.76 16 13 C 0.05 2.56 4.45 29.85 0.13 2.69 16 14 C -0.56 -33.80 8.39 25.60 0.21 -33.59 16 15 H 0.04 2.85 6.35 -2.91 -0.02 2.83 16 16 C 0.02 1.17 5.46 84.65 0.46 1.63 16 17 N -0.92 -55.32 13.29 21.45 0.28 -55.04 16 18 Si 0.94 48.30 29.54 68.60 2.03 50.33 16 19 H -0.27 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.29 -15.32 7.11 99.48 0.71 -14.62 16 22 C -0.13 -4.86 9.38 22.36 0.21 -4.65 16 23 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 24 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 25 H 0.07 0.86 7.65 -2.39 -0.02 0.84 16 26 H 0.16 2.00 6.30 -2.91 -0.02 1.98 16 27 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 28 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.07 1.70 6.37 -2.39 -0.02 1.69 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.08 3.83 7.45 -2.91 -0.02 3.81 16 Total: -1.00 -87.39 305.91 3.16 -84.23 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: 1.08 Total: -0.99 kcal Atomic # 6 Polarization: -71.34 SS G_CDS: 3.73 Total: -67.61 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.28 Total: -55.04 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -3.24 Total: -61.99 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -0.72 Total: 51.07 kcal Total: -87.39 3.16 -84.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.367 kcal (2) G-P(sol) polarization free energy of solvation -87.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds