Wall clock time and date at job start Mon Mar 30 2020 07:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 120.00213 * 2 1 4 4 C 1.38211 * 119.99788 * 180.28358 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.45940 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 S 1.76195 * 120.00372 * 180.02562 * 6 5 4 8 8 O 1.42098 * 104.28139 * 206.07056 * 7 6 5 9 9 O 1.42108 * 104.27717 * 333.92954 * 7 6 5 10 10 C 1.81398 * 104.45091 * 89.99683 * 7 6 5 11 11 H 1.09000 * 109.47289 * 300.00371 * 10 7 6 12 12 C 1.53001 * 109.46812 * 60.00295 * 10 7 6 13 13 C 1.52998 * 109.47487 * 180.02562 * 10 7 6 14 14 C 1.50697 * 109.46982 * 64.99707 * 13 10 7 15 15 H 1.07994 * 120.00061 * 0.02562 * 14 13 10 16 16 C 1.37883 * 119.99909 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99741 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00132 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46892 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47257 * 119.99844 * 18 16 14 21 21 H 1.48495 * 109.47228 * 240.00402 * 18 16 14 22 22 C 1.38212 * 119.99687 * 179.72372 * 2 1 3 23 23 H 1.08998 * 109.46800 * 270.28143 * 1 2 3 24 24 H 1.09007 * 109.47085 * 30.27480 * 1 2 3 25 25 H 1.08997 * 109.47544 * 150.28187 * 1 2 3 26 26 H 1.07998 * 119.99812 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.74545 * 4 3 2 28 28 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 29 29 H 1.08996 * 109.47425 * 299.99600 * 12 10 7 30 30 H 1.08995 * 109.47455 * 60.00342 * 12 10 7 31 31 H 1.09007 * 109.46869 * 180.02562 * 12 10 7 32 32 H 1.09002 * 109.47617 * 185.00438 * 13 10 7 33 33 H 1.09010 * 109.47078 * 305.00500 * 13 10 7 34 34 H 0.96997 * 119.99603 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.00342 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0059 5 6 4.2717 -0.0001 -0.0006 6 6 3.5806 -1.1971 0.0052 7 16 4.4615 -2.7230 0.0128 8 8 3.5655 -3.6479 -0.5880 9 8 5.7081 -2.4110 -0.5939 10 6 4.6877 -3.1064 1.7713 11 1 5.2550 -2.3067 2.2475 12 6 3.3202 -3.2330 2.4456 13 6 5.4502 -4.4254 1.9118 14 6 6.8418 -4.2626 1.3569 15 1 7.1516 -3.3133 0.9456 16 6 7.7197 -5.3258 1.3743 17 7 7.3423 -6.4820 1.8747 18 14 9.4449 -5.1239 0.6872 19 1 9.6192 -3.7366 0.1868 20 1 10.4386 -5.3931 1.7574 21 1 9.6483 -6.0814 -0.4294 22 6 2.1980 -1.1970 0.0058 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0101 28 1 5.3517 -0.0002 -0.0005 29 1 2.7773 -2.2932 2.3457 30 1 2.7529 -4.0327 1.9695 31 1 3.4561 -3.4630 3.5025 32 1 5.5088 -4.7010 2.9647 33 1 4.9283 -5.2074 1.3600 34 1 7.9599 -7.2297 1.8873 35 1 1.6580 -2.1323 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695894862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:23 Heat of formation + Delta-G solvation = -63.791437 kcal Electronic energy + Delta-G solvation = -18575.340224 eV Core-core repulsion = 15665.071454 eV Total energy + Delta-G solvation = -2910.268770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.30461 -36.37345 -35.17078 -34.83818 -32.94663 -32.20605 -31.18267 -27.60764 -27.06864 -23.55138 -23.20305 -21.79150 -21.10961 -18.13294 -17.24893 -16.53338 -16.14281 -15.68352 -15.49376 -14.58530 -14.45407 -14.18566 -13.96000 -13.29874 -13.21184 -12.67922 -12.43815 -12.40150 -12.19455 -12.03866 -11.83859 -11.60378 -11.33464 -11.29845 -11.12315 -10.90757 -10.72628 -10.50245 -10.33495 -9.84473 -9.44839 -9.25132 -9.04973 -8.79629 -8.42459 -6.08888 -4.14838 0.68473 1.00369 1.27609 3.33788 3.41735 3.44069 3.51329 3.69653 4.45377 4.55264 4.60353 4.71526 4.91665 4.95477 5.15913 5.28471 5.29082 5.32398 5.42911 5.43053 5.58607 5.63569 5.75605 5.84037 5.99936 6.11770 6.19998 6.24364 6.36571 6.43720 6.43996 6.85299 7.36554 7.41695 7.90863 8.14461 8.95797 9.54646 11.01859 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033329 B = 0.005728 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.915968 B = 4886.953809 C = 5274.920063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C -0.078 4.078 4 C -0.140 4.140 5 C -0.031 4.031 6 C -0.652 4.652 7 S 2.497 3.503 8 O -0.949 6.949 9 O -0.928 6.928 10 C -0.538 4.538 11 H 0.127 0.873 12 C -0.141 4.141 13 C 0.035 3.965 14 C -0.555 4.555 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.281 1.281 22 C -0.026 4.026 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.142 0.858 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 14.091 -0.445 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.049 4.049 6 C -0.735 4.735 7 S 2.676 3.324 8 O -0.947 6.947 9 O -0.925 6.925 10 C -0.650 4.650 11 H 0.146 0.854 12 C -0.200 4.200 13 C -0.003 4.003 14 C -0.593 4.593 15 H 0.098 0.902 16 C -0.136 4.136 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.045 4.045 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.159 0.841 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.722 13.503 -1.166 17.919 hybrid contribution 0.716 0.641 0.305 1.008 sum -11.006 14.145 -0.861 17.943 Atomic orbital electron populations 1.20801 0.90726 1.03032 1.02514 1.20034 0.96385 0.93224 1.01717 1.21266 0.94427 0.97548 0.96333 1.21261 0.94396 0.98230 1.01944 1.21026 1.00622 0.91103 0.92169 1.31256 1.06181 1.21100 1.14993 1.05892 0.74025 0.73360 0.79114 1.93470 1.65548 1.61047 1.74615 1.93522 1.41719 1.83155 1.74070 1.29962 1.04335 1.11389 1.19354 0.85449 1.21692 0.93543 1.01923 1.02809 1.19086 0.94181 0.86717 1.00364 1.21632 0.97415 0.99140 1.41154 0.90200 1.24972 0.99119 0.94920 0.94621 1.69972 1.36095 1.01883 1.44906 0.86490 0.83699 0.79023 0.78792 1.18898 1.20919 1.20669 1.20878 0.92192 0.98652 0.92780 0.91008 0.91527 0.91130 0.85710 0.85306 0.84061 0.92645 0.91022 0.90571 0.93520 0.94855 0.92708 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.11 -1.33 5.88 -104.62 -0.62 -1.95 16 3 C -0.08 -0.84 9.70 -39.58 -0.38 -1.23 16 4 C -0.14 -1.65 10.05 -39.58 -0.40 -2.04 16 5 C -0.03 -0.45 9.47 -39.58 -0.37 -0.82 16 6 C -0.65 -10.58 5.06 -39.58 -0.20 -10.78 16 7 S 2.50 50.67 4.40 -107.50 -0.47 50.20 16 8 O -0.95 -21.14 17.01 -57.54 -0.98 -22.12 16 9 O -0.93 -21.73 15.17 -57.54 -0.87 -22.60 16 10 C -0.54 -10.43 2.83 -26.73 -0.08 -10.51 16 11 H 0.13 2.23 8.14 -51.92 -0.42 1.81 16 12 C -0.14 -2.21 8.97 37.16 0.33 -1.87 16 13 C 0.03 0.87 4.45 -27.89 -0.12 0.75 16 14 C -0.56 -15.59 8.26 -34.44 -0.28 -15.87 16 15 H 0.08 2.21 6.30 -52.49 -0.33 1.88 16 16 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.26 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.03 -0.38 8.18 -39.58 -0.32 -0.70 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.14 1.98 7.57 -52.49 -0.40 1.59 16 29 H 0.05 0.71 6.71 -51.93 -0.35 0.36 16 30 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 35 H 0.14 1.87 7.57 -52.49 -0.40 1.47 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -34.02 306.62 -9.00 -43.02 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.83 Total: -0.74 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: -2.18 Total: -43.83 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.85 Total: -44.72 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 50.67 SS G_CDS: -0.47 Total: 50.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.02 -9.00 -43.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695894862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.770 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds