Wall clock time and date at job start Mon Mar 30 2020 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 120.00213 * 2 1 4 4 C 1.38211 * 119.99788 * 180.28358 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.45940 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 S 1.76195 * 120.00372 * 180.02562 * 6 5 4 8 8 O 1.42098 * 104.28139 * 206.07056 * 7 6 5 9 9 O 1.42108 * 104.27717 * 333.92954 * 7 6 5 10 10 C 1.81398 * 104.45091 * 89.99683 * 7 6 5 11 11 H 1.09000 * 109.47289 * 300.00371 * 10 7 6 12 12 C 1.53001 * 109.46812 * 60.00295 * 10 7 6 13 13 C 1.52998 * 109.47487 * 180.02562 * 10 7 6 14 14 C 1.50697 * 109.46982 * 64.99707 * 13 10 7 15 15 H 1.07994 * 120.00061 * 0.02562 * 14 13 10 16 16 C 1.37883 * 119.99909 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99741 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00132 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46892 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47257 * 119.99844 * 18 16 14 21 21 H 1.48495 * 109.47228 * 240.00402 * 18 16 14 22 22 C 1.38212 * 119.99687 * 179.72372 * 2 1 3 23 23 H 1.08998 * 109.46800 * 270.28143 * 1 2 3 24 24 H 1.09007 * 109.47085 * 30.27480 * 1 2 3 25 25 H 1.08997 * 109.47544 * 150.28187 * 1 2 3 26 26 H 1.07998 * 119.99812 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.74545 * 4 3 2 28 28 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 29 29 H 1.08996 * 109.47425 * 299.99600 * 12 10 7 30 30 H 1.08995 * 109.47455 * 60.00342 * 12 10 7 31 31 H 1.09007 * 109.46869 * 180.02562 * 12 10 7 32 32 H 1.09002 * 109.47617 * 185.00438 * 13 10 7 33 33 H 1.09010 * 109.47078 * 305.00500 * 13 10 7 34 34 H 0.96997 * 119.99603 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.00342 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0059 5 6 4.2717 -0.0001 -0.0006 6 6 3.5806 -1.1971 0.0052 7 16 4.4615 -2.7230 0.0128 8 8 3.5655 -3.6479 -0.5880 9 8 5.7081 -2.4110 -0.5939 10 6 4.6877 -3.1064 1.7713 11 1 5.2550 -2.3067 2.2475 12 6 3.3202 -3.2330 2.4456 13 6 5.4502 -4.4254 1.9118 14 6 6.8418 -4.2626 1.3569 15 1 7.1516 -3.3133 0.9456 16 6 7.7197 -5.3258 1.3743 17 7 7.3423 -6.4820 1.8747 18 14 9.4449 -5.1239 0.6872 19 1 9.6192 -3.7366 0.1868 20 1 10.4386 -5.3931 1.7574 21 1 9.6483 -6.0814 -0.4294 22 6 2.1980 -1.1970 0.0058 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0101 28 1 5.3517 -0.0002 -0.0005 29 1 2.7773 -2.2932 2.3457 30 1 2.7529 -4.0327 1.9695 31 1 3.4561 -3.4630 3.5025 32 1 5.5088 -4.7010 2.9647 33 1 4.9283 -5.2074 1.3600 34 1 7.9599 -7.2297 1.8873 35 1 1.6580 -2.1323 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695894862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:18 Heat of formation + Delta-G solvation = -86.377157 kcal Electronic energy + Delta-G solvation = -18576.319614 eV Core-core repulsion = 15665.071454 eV Total energy + Delta-G solvation = -2911.248160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28152 -38.05018 -36.87834 -36.62258 -34.23585 -33.80268 -32.24073 -29.46256 -27.87524 -25.41842 -24.33852 -22.93175 -22.64322 -19.62506 -18.67148 -18.52486 -17.56807 -16.89752 -16.85229 -16.50258 -15.87350 -15.23346 -15.01757 -14.67194 -14.28400 -14.21615 -14.15355 -13.67541 -13.35508 -13.19810 -13.13328 -13.04394 -12.98297 -12.92561 -12.72291 -12.54498 -12.37025 -12.13962 -11.77405 -11.63050 -11.28880 -10.97363 -10.60181 -10.24620 -9.75161 -8.28803 -6.40772 -0.78997 -0.13202 0.30355 1.35509 1.38607 1.53466 2.15966 2.38328 2.49394 3.02282 3.07388 3.25533 3.76022 3.88267 3.92514 3.99820 4.09118 4.33798 4.36610 4.40835 4.56894 4.77158 4.83019 4.84886 4.87433 4.93472 5.14618 5.16709 5.26552 5.31223 5.32494 5.33777 5.47420 5.71467 5.92404 6.00825 6.77179 7.31791 8.82891 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033329 B = 0.005728 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.915968 B = 4886.953809 C = 5274.920063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.109 4.109 3 C -0.066 4.066 4 C -0.133 4.133 5 C -0.053 4.053 6 C -0.655 4.655 7 S 2.488 3.512 8 O -0.984 6.984 9 O -0.973 6.973 10 C -0.532 4.532 11 H 0.146 0.854 12 C -0.140 4.140 13 C 0.035 3.965 14 C -0.572 4.572 15 H 0.078 0.922 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.950 3.050 19 H -0.264 1.264 20 H -0.266 1.266 21 H -0.277 1.277 22 C -0.046 4.046 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.035 0.965 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 17.269 -0.112 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.110 4.110 3 C -0.084 4.084 4 C -0.152 4.152 5 C -0.072 4.072 6 C -0.745 4.745 7 S 2.675 3.325 8 O -0.981 6.981 9 O -0.971 6.971 10 C -0.645 4.645 11 H 0.164 0.836 12 C -0.198 4.198 13 C -0.004 4.004 14 C -0.610 4.610 15 H 0.096 0.904 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.203 1.203 22 C -0.065 4.065 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.185 0.815 27 H 0.180 0.820 28 H 0.154 0.846 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.135 16.624 -0.830 21.204 hybrid contribution 1.035 -0.212 0.199 1.075 sum -12.100 16.412 -0.631 20.401 Atomic orbital electron populations 1.20907 0.88168 1.04183 1.03892 1.20446 0.98230 0.92447 0.99918 1.21806 0.94153 0.98863 0.93562 1.21653 0.95192 0.98165 1.00195 1.21186 1.00763 0.91798 0.93461 1.30357 1.06667 1.18573 1.18886 1.05436 0.73453 0.74522 0.79075 1.93415 1.65818 1.63400 1.75500 1.93453 1.44183 1.84216 1.75205 1.29815 1.06197 1.08821 1.19647 0.83627 1.21756 0.91357 1.03713 1.03000 1.18909 0.93504 0.89052 0.98893 1.22033 0.98944 0.99088 1.40885 0.90440 1.25845 1.03106 0.94783 0.95081 1.70062 1.37541 1.02600 1.46088 0.85612 0.79514 0.78892 0.78592 1.18821 1.19085 1.20271 1.21049 0.91401 1.00154 0.93856 0.89398 0.89246 0.91225 0.81481 0.82008 0.84611 0.89271 0.91454 0.89189 0.94630 0.97616 0.92339 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.11 -2.18 5.88 -19.87 -0.12 -2.29 16 3 C -0.07 -1.11 9.70 22.27 0.22 -0.89 16 4 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 5 C -0.05 -1.48 9.47 22.27 0.21 -1.27 16 6 C -0.66 -20.96 5.06 22.27 0.11 -20.84 16 7 S 2.49 104.87 4.40 -56.49 -0.25 104.62 16 8 O -0.98 -46.05 17.01 -127.65 -2.17 -48.22 16 9 O -0.97 -47.86 15.17 -127.65 -1.94 -49.80 16 10 C -0.53 -21.09 2.83 30.59 0.09 -21.00 16 11 H 0.15 5.15 8.14 -2.39 -0.02 5.13 16 12 C -0.14 -4.29 8.97 71.98 0.65 -3.65 16 13 C 0.03 1.81 4.45 29.85 0.13 1.94 16 14 C -0.57 -33.21 8.26 25.60 0.21 -33.00 16 15 H 0.08 4.45 6.30 -2.91 -0.02 4.43 16 16 C 0.01 0.67 5.46 84.66 0.46 1.13 16 17 N -0.92 -56.40 13.29 21.45 0.28 -56.11 16 18 Si 0.95 46.18 29.54 68.60 2.03 48.21 16 19 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C -0.05 -1.24 8.18 22.27 0.18 -1.05 16 23 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 0.77 8.09 -2.38 -0.02 0.75 16 25 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 26 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.14 3.82 7.57 -2.91 -0.02 3.80 16 29 H 0.09 2.12 6.71 -2.39 -0.02 2.10 16 30 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 31 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.14 3.65 7.57 -2.91 -0.02 3.63 16 Total: -1.00 -77.06 306.62 2.10 -74.96 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.07 Total: 10.44 kcal Atomic # 6 Polarization: -87.18 SS G_CDS: 3.08 Total: -84.10 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.11 kcal Atomic # 8 Polarization: -93.91 SS G_CDS: -4.11 Total: -98.01 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 16 Polarization: 104.87 SS G_CDS: -0.25 Total: 104.62 kcal Total: -77.06 2.10 -74.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695894862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.422 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds