Wall clock time and date at job start Mon Mar 30 2020 08:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48501 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47353 * 300.00056 * 3 2 1 6 6 H 1.48503 * 109.46973 * 60.00325 * 3 2 1 7 7 C 1.37877 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00060 * 185.70985 * 7 2 1 9 9 C 1.50701 * 119.99997 * 5.71210 * 7 2 1 10 10 H 1.08995 * 109.47200 * 25.08246 * 9 7 2 11 11 C 1.50703 * 109.47195 * 145.08496 * 9 7 2 12 12 O 1.21208 * 119.99928 * 94.99409 * 11 9 7 13 13 C 1.47531 * 119.99537 * 275.00028 * 11 9 7 14 14 C 1.39681 * 120.11128 * 179.97438 * 13 11 9 15 15 N 1.32068 * 119.84444 * 180.02562 * 14 13 11 16 16 C 1.32136 * 120.08680 * 359.97438 * 15 14 13 17 17 C 1.38836 * 120.23574 * 359.97438 * 16 15 14 18 18 N 1.31726 * 120.14981 * 359.97438 * 17 16 15 19 19 C 1.50704 * 109.47054 * 265.08148 * 9 7 2 20 20 C 1.38236 * 119.99752 * 306.58500 * 19 9 7 21 21 C 1.38238 * 119.99759 * 179.78570 * 20 19 9 22 22 C 1.38237 * 119.99830 * 0.44320 * 21 20 19 23 23 C 1.38243 * 120.00297 * 359.81118 * 22 21 20 24 24 C 1.38229 * 119.99621 * 126.85666 * 19 9 7 25 25 H 0.96993 * 119.99924 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.07599 * 359.97438 * 14 13 11 27 27 H 1.07999 * 119.88116 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.92098 * 180.27890 * 17 16 15 29 29 H 1.07996 * 120.00423 * 0.02562 * 20 19 9 30 30 H 1.07993 * 120.00279 * 180.27612 * 21 20 19 31 31 H 1.07997 * 120.00504 * 179.83002 * 22 21 20 32 32 H 1.07993 * 120.00422 * 180.02562 * 23 22 21 33 33 H 1.08000 * 120.00463 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0805 -1.1964 0.0925 9 6 1.2567 -2.4959 -0.1310 10 1 0.3099 -2.3213 -0.6420 11 6 2.0840 -3.4730 -0.9260 12 8 2.7939 -4.2718 -0.3541 13 6 2.0297 -3.4571 -2.4002 14 6 2.7958 -4.3614 -3.1394 15 7 2.7436 -4.3422 -4.4589 16 6 1.9680 -3.4700 -5.0785 17 6 1.2043 -2.5704 -4.3472 18 7 1.2485 -2.5820 -3.0307 19 6 0.9906 -3.0619 1.2401 20 6 2.0341 -3.2385 2.1294 21 6 1.7894 -3.7536 3.3886 22 6 0.5025 -4.1007 3.7553 23 6 -0.5403 -3.9290 2.8641 24 6 -0.2961 -3.4098 1.6064 25 1 -0.4850 0.8400 0.0004 26 1 3.4300 -5.0739 -2.6331 27 1 1.9276 -3.4575 -6.1577 28 1 0.5687 -1.8628 -4.8587 29 1 3.0400 -2.9704 1.8417 30 1 2.6039 -3.8874 4.0850 31 1 0.3117 -4.5057 4.7381 32 1 -1.5456 -4.1998 3.1507 33 1 -1.1108 -3.2756 0.9102 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699781606.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:19:19 Heat of formation + Delta-G solvation = 38.466952 kcal Electronic energy + Delta-G solvation = -19475.928738 eV Core-core repulsion = 16466.943025 eV Total energy + Delta-G solvation = -3008.985713 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.82301 -38.92134 -37.55786 -34.19106 -33.50455 -31.41682 -31.06839 -29.95076 -27.67067 -25.28710 -24.34504 -23.52098 -21.61185 -21.06975 -19.27638 -17.26629 -16.91238 -16.63196 -16.13206 -15.75781 -14.76792 -14.69371 -14.36374 -14.27535 -13.86200 -13.39133 -13.11245 -12.68686 -12.46978 -12.22184 -11.69664 -11.63229 -11.30468 -11.06422 -11.02320 -10.95936 -10.44236 -10.25419 -9.94707 -9.47316 -9.28612 -9.18240 -8.70734 -8.44842 -7.96721 -7.61475 -6.21905 -4.25920 0.61779 1.33160 2.34586 2.37505 2.90282 3.21757 3.29715 3.33839 4.06967 4.19113 4.32135 4.39973 4.58370 4.76832 4.96015 5.16434 5.28908 5.40911 5.67282 5.70519 5.79023 5.89438 6.21819 6.32057 6.47761 6.54796 6.60068 6.87540 6.98162 7.20450 7.35396 7.40239 7.43931 7.65070 7.77548 7.93072 7.96081 8.09267 8.31603 8.78414 9.36850 10.86968 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.008392 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.796396 B = 3335.673139 C = 4648.917024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.080 3.920 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.042 3.958 10 H 0.101 0.899 11 C 0.422 3.578 12 O -0.465 6.465 13 C 0.024 3.976 14 C 0.085 3.915 15 N -0.451 5.451 16 C 0.056 3.944 17 C 0.043 3.957 18 N -0.367 5.367 19 C -0.028 4.028 20 C -0.085 4.085 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.133 4.133 24 C -0.118 4.118 25 H 0.265 0.735 26 H 0.175 0.825 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 -5.126 -4.678 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.125 4.125 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.119 0.881 11 C 0.299 3.701 12 O -0.339 6.339 13 C -0.115 4.115 14 C -0.074 4.074 15 N -0.165 5.165 16 C -0.105 4.105 17 C -0.120 4.120 18 N -0.084 5.084 19 C -0.029 4.029 20 C -0.103 4.103 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.151 4.151 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.192 0.808 27 H 0.186 0.814 28 H 0.189 0.811 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.392 -5.450 -4.329 6.971 hybrid contribution 0.349 1.185 -0.137 1.243 sum 0.741 -4.265 -4.465 6.219 Atomic orbital electron populations 1.69928 1.05924 1.27112 1.47223 1.24885 0.94859 0.99143 0.93641 0.86487 0.80257 0.83258 0.77809 1.19596 1.20664 1.20738 1.20509 0.93016 0.88071 1.52394 0.92252 1.18335 0.98858 0.91998 0.88517 0.88145 1.23283 0.80235 0.81035 0.85575 1.90418 1.35671 1.35786 1.71979 1.23189 0.95560 0.93785 0.98971 1.23959 0.96185 0.97191 0.90056 1.68490 1.17234 1.20875 1.09928 1.24013 0.92609 0.91925 1.01922 1.23976 0.98595 0.98588 0.90835 1.68720 1.14070 1.16357 1.09232 1.20323 0.92317 0.92350 0.97890 1.20927 0.99343 0.97363 0.92633 1.20990 0.96259 1.01401 0.96761 1.20820 0.93425 1.03432 0.98905 1.20919 0.97996 1.01605 0.94612 1.21027 0.96887 0.99329 0.96342 0.92504 0.80803 0.81439 0.81143 0.86698 0.87536 0.87709 0.87541 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.27 12.85 55.43 0.71 -22.55 16 2 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -13.01 7.64 -34.44 -0.26 -13.27 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.04 1.01 2.01 -94.07 -0.19 0.82 16 10 H 0.10 2.57 6.78 -51.93 -0.35 2.22 16 11 C 0.42 9.27 6.21 -30.52 -0.19 9.08 16 12 O -0.46 -10.40 15.11 5.62 0.08 -10.32 16 13 C 0.02 0.47 6.73 -82.96 -0.56 -0.09 16 14 C 0.09 1.44 10.78 -16.91 -0.18 1.25 16 15 N -0.45 -6.93 10.49 -12.63 -0.13 -7.06 16 16 C 0.06 0.72 11.23 -17.20 -0.19 0.52 16 17 C 0.04 0.62 11.22 -17.38 -0.20 0.42 16 18 N -0.37 -7.00 9.71 -9.69 -0.09 -7.10 16 19 C -0.03 -0.65 4.57 -104.62 -0.48 -1.13 16 20 C -0.08 -1.87 8.03 -39.58 -0.32 -2.19 16 21 C -0.14 -2.63 10.05 -39.58 -0.40 -3.03 16 22 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 24 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.17 2.69 7.65 -52.49 -0.40 2.29 16 27 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.11 2.59 7.65 -52.49 -0.40 2.18 16 30 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.11 2.35 7.96 -52.49 -0.42 1.94 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -29.59 299.15 -7.41 -37.00 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.23 Total: 4.60 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -4.24 Total: -14.55 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.49 Total: -36.71 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.59 -7.41 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699781606.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.466 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds