Wall clock time and date at job start Mon Mar 30 2020 08:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99876 * 2 1 4 4 H 1.48503 * 109.47037 * 239.99723 * 3 2 1 5 5 H 1.48495 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46807 * 120.00126 * 3 2 1 7 7 C 1.37871 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99638 * 185.00164 * 7 2 1 9 9 C 1.50705 * 120.00483 * 5.00703 * 7 2 1 10 10 H 1.09001 * 109.47006 * 177.97079 * 9 7 2 11 11 C 1.50694 * 109.46823 * 57.96902 * 9 7 2 12 12 O 1.21210 * 120.00345 * 270.00011 * 11 9 7 13 13 C 1.47535 * 119.99904 * 90.00398 * 11 9 7 14 14 C 1.39676 * 120.11427 * 179.97438 * 13 11 9 15 15 N 1.32069 * 119.84555 * 180.02562 * 14 13 11 16 16 C 1.32138 * 120.08756 * 359.97438 * 15 14 13 17 17 C 1.38836 * 120.23291 * 0.02562 * 16 15 14 18 18 N 1.31724 * 120.15203 * 359.97438 * 17 16 15 19 19 C 1.50698 * 109.46978 * 297.97139 * 9 7 2 20 20 C 1.38243 * 119.99755 * 336.46835 * 19 9 7 21 21 C 1.38232 * 119.99834 * 179.80955 * 20 19 9 22 22 C 1.38237 * 119.99959 * 0.39732 * 21 20 19 23 23 C 1.38237 * 120.00095 * 359.85900 * 22 21 20 24 24 C 1.38230 * 120.00105 * 156.74250 * 19 9 7 25 25 H 0.97004 * 119.99950 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.07529 * 359.97438 * 14 13 11 27 27 H 1.08000 * 119.88688 * 180.02562 * 16 15 14 28 28 H 1.07999 * 119.92419 * 179.97438 * 17 16 15 29 29 H 1.07999 * 120.00220 * 0.02562 * 20 19 9 30 30 H 1.08004 * 120.00233 * 180.23474 * 21 20 19 31 31 H 1.08005 * 120.00205 * 179.83727 * 22 21 20 32 32 H 1.08003 * 120.00064 * 179.97438 * 23 22 21 33 33 H 1.07993 * 120.00137 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1958 0.0821 9 6 1.2553 -2.4968 -0.1128 10 1 1.9651 -3.3237 -0.1313 11 6 0.4453 -2.5014 -1.3835 12 8 -0.6918 -2.0815 -1.3791 13 6 1.0362 -3.0171 -2.6331 14 6 0.2875 -3.0230 -3.8122 15 7 0.8216 -3.4863 -4.9277 16 6 2.0616 -3.9428 -4.9286 17 6 2.8090 -3.9385 -3.7586 18 7 2.2855 -3.4786 -2.6408 19 6 0.3347 -2.6513 1.0703 20 6 0.6022 -1.9768 2.2469 21 6 -0.2444 -2.1154 3.3309 22 6 -1.3539 -2.9350 3.2409 23 6 -1.6185 -3.6137 2.0660 24 6 -0.7740 -3.4720 0.9807 25 1 -0.4850 0.8401 0.0004 26 1 -0.7262 -2.6504 -3.8115 27 1 2.4953 -4.3206 -5.8427 28 1 3.8219 -4.3132 -3.7649 29 1 1.4706 -1.3387 2.3182 30 1 -0.0376 -1.5855 4.2489 31 1 -2.0140 -3.0455 4.0886 32 1 -2.4852 -4.2544 1.9958 33 1 -0.9808 -4.0021 0.0629 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699781607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:19:25 Heat of formation + Delta-G solvation = 47.779152 kcal Electronic energy + Delta-G solvation = -19807.099856 eV Core-core repulsion = 16798.517950 eV Total energy + Delta-G solvation = -3008.581906 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71970 -38.74911 -37.18706 -34.08425 -33.49445 -31.29492 -30.84258 -29.74915 -27.55775 -25.17620 -24.29326 -23.47838 -21.40358 -20.78561 -19.19825 -17.19429 -16.93129 -16.50096 -15.84210 -15.46308 -14.88328 -14.51765 -14.19590 -14.12449 -13.67087 -13.21897 -12.76980 -12.56215 -12.27845 -12.23535 -11.80824 -11.39176 -11.31007 -10.97497 -10.88928 -10.77070 -10.50129 -10.08419 -9.65632 -9.48669 -9.13615 -9.04937 -8.67609 -8.23953 -7.78409 -7.40535 -6.09142 -4.25212 0.76988 1.37832 2.50960 2.57294 3.20937 3.28693 3.30080 3.34061 4.20119 4.29779 4.36671 4.49684 4.67041 4.91251 5.05518 5.16700 5.39779 5.51890 5.74274 5.82646 5.90219 6.02244 6.32034 6.51443 6.60497 6.72570 6.78069 6.98724 7.12734 7.18966 7.46941 7.49656 7.60554 7.71714 7.80713 8.00655 8.12589 8.26443 8.69670 8.84700 9.37793 10.87081 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.008353 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.422738 B = 3351.438446 C = 4464.859621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.051 3.949 10 H 0.068 0.932 11 C 0.408 3.592 12 O -0.411 6.411 13 C 0.034 3.966 14 C 0.081 3.919 15 N -0.449 5.449 16 C 0.047 3.953 17 C 0.041 3.959 18 N -0.389 5.389 19 C -0.005 4.005 20 C -0.071 4.071 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.134 4.134 24 C -0.121 4.121 25 H 0.265 0.735 26 H 0.174 0.826 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -6.987 -2.977 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.144 4.144 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.032 3.968 10 H 0.086 0.914 11 C 0.280 3.720 12 O -0.280 6.280 13 C -0.105 4.105 14 C -0.078 4.078 15 N -0.164 5.164 16 C -0.114 4.114 17 C -0.122 4.122 18 N -0.107 5.107 19 C -0.006 4.006 20 C -0.088 4.088 21 C -0.157 4.157 22 C -0.167 4.167 23 C -0.152 4.152 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.191 0.809 27 H 0.183 0.817 28 H 0.186 0.814 29 H 0.143 0.857 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.814 -6.603 -2.950 7.456 hybrid contribution 0.468 1.174 -0.351 1.312 sum 2.282 -5.429 -3.301 6.751 Atomic orbital electron populations 1.70152 1.05233 1.27008 1.43778 1.25155 0.94987 0.99329 0.94886 0.86730 0.79790 0.83263 0.78878 1.20277 1.21166 1.19791 1.20630 0.93360 0.88420 1.53257 0.91318 1.18082 0.92985 0.98869 0.86908 0.91361 1.22852 0.86762 0.74110 0.88270 1.90473 1.18535 1.32166 1.86779 1.23707 0.91319 0.97195 0.98328 1.23962 1.01624 0.94086 0.88116 1.68462 1.11761 1.07613 1.28520 1.23927 0.91243 0.96584 0.99621 1.23889 1.01489 0.97376 0.89396 1.68605 1.10246 1.03916 1.27966 1.20006 0.93931 0.91560 0.95069 1.21005 0.99193 0.96863 0.91783 1.20990 0.96220 0.99902 0.98548 1.20749 0.98433 1.00101 0.97422 1.20783 0.99288 1.01132 0.94042 1.20857 0.95876 1.00044 0.97149 0.92462 0.80854 0.81674 0.81374 0.85704 0.87934 0.88123 0.88064 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.61 9.90 55.43 0.55 -22.06 16 2 C 0.07 1.68 4.46 -17.82 -0.08 1.60 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -13.10 7.22 -34.44 -0.25 -13.35 16 8 H 0.07 1.71 7.82 -52.48 -0.41 1.30 16 9 C 0.05 1.20 2.53 -94.08 -0.24 0.96 16 10 H 0.07 1.54 7.63 -51.93 -0.40 1.14 16 11 C 0.41 9.47 4.81 -30.52 -0.15 9.32 16 12 O -0.41 -10.40 13.30 5.62 0.07 -10.32 16 13 C 0.03 0.68 6.73 -82.95 -0.56 0.12 16 14 C 0.08 1.48 10.78 -16.91 -0.18 1.30 16 15 N -0.45 -7.31 10.49 -12.63 -0.13 -7.44 16 16 C 0.05 0.62 11.23 -17.20 -0.19 0.42 16 17 C 0.04 0.57 11.22 -17.38 -0.20 0.37 16 18 N -0.39 -7.17 9.62 -9.69 -0.09 -7.26 16 19 C 0.00 -0.12 4.20 -104.62 -0.44 -0.56 16 20 C -0.07 -1.60 8.36 -39.58 -0.33 -1.93 16 21 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 22 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 23 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.12 -2.66 8.43 -39.58 -0.33 -3.00 16 25 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.17 3.05 7.65 -52.49 -0.40 2.64 16 27 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.13 2.91 6.64 -52.49 -0.35 2.57 16 30 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.10 2.10 6.99 -52.49 -0.37 1.73 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -29.75 289.60 -7.57 -37.32 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.17 Total: 4.34 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -4.14 Total: -14.27 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.32 Total: -36.77 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.75 -7.57 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699781607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.100 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds