Wall clock time and date at job start Mon Mar 30 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00213 * 2 1 4 4 H 1.48507 * 109.47121 * 240.00540 * 3 2 1 5 5 H 1.48507 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47443 * 120.00392 * 3 2 1 7 7 C 1.37872 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00089 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47221 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99745 * 180.02562 * 10 9 7 12 12 O 1.21690 * 120.00002 * 5.11895 * 11 10 9 13 13 C 1.46670 * 119.99451 * 185.12042 * 11 10 9 14 14 C 1.37887 * 126.22843 * 354.47111 * 13 11 10 15 15 C 1.39888 * 107.10036 * 180.02562 * 14 13 11 16 16 Cl 1.73592 * 126.07874 * 179.97438 * 15 14 13 17 17 C 1.35523 * 107.84781 * 0.26691 * 15 14 13 18 18 N 1.35629 * 108.85156 * 359.56489 * 17 15 14 19 19 C 1.46499 * 125.67813 * 180.21168 * 18 17 15 20 20 C 1.52999 * 117.49946 * 13.18981 * 19 18 17 21 21 C 1.52993 * 117.49978 * 304.52692 * 19 18 17 22 22 H 0.97009 * 119.99641 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46933 * 59.99669 * 9 7 2 24 24 H 1.09000 * 109.46785 * 299.99983 * 9 7 2 25 25 H 0.97001 * 120.00186 * 359.97438 * 10 9 7 26 26 H 1.08002 * 126.45307 * 359.97438 * 14 13 11 27 27 H 1.07994 * 125.57381 * 179.70123 * 17 15 14 28 28 H 1.08996 * 115.55156 * 158.85735 * 19 18 17 29 29 H 1.09006 * 117.49775 * 359.97438 * 20 19 18 30 30 H 1.09001 * 117.50532 * 145.02237 * 20 19 18 31 31 H 1.08995 * 117.50493 * 214.97753 * 21 19 18 32 32 H 1.09007 * 117.50023 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5611 -5.1070 -0.0962 13 6 2.7020 -5.9966 0.1096 14 6 4.0774 -5.8980 0.1147 15 6 4.5824 -7.1966 0.2388 16 17 6.2597 -7.6401 0.2960 17 6 3.5294 -8.0477 0.2998 18 7 2.3810 -7.3298 0.2283 19 6 1.0245 -7.8818 0.2656 20 6 0.8669 -9.3398 0.7021 21 6 0.6696 -8.9543 -0.7661 22 1 -0.4850 0.8402 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 3.1567 -3.4355 -0.0028 26 1 4.6559 -4.9893 0.0368 27 1 3.5942 -9.1217 0.3926 28 1 0.2401 -7.1824 0.5547 29 1 1.7726 -9.8883 0.9610 30 1 -0.0214 -9.5997 1.2779 31 1 -0.3483 -8.9608 -1.1556 32 1 1.4453 -9.2489 -1.4731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700873753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:13 Heat of formation + Delta-G solvation = 7.209972 kcal Electronic energy + Delta-G solvation = -17509.783736 eV Core-core repulsion = 14497.009769 eV Total energy + Delta-G solvation = -3012.773967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.63964 -40.06735 -38.04850 -37.17106 -36.21058 -34.42422 -31.64983 -30.94274 -28.88778 -25.29222 -24.12770 -23.48625 -23.08923 -21.39322 -20.72606 -19.35759 -18.23055 -17.06621 -16.96684 -16.68795 -16.17089 -16.11213 -15.43115 -15.29651 -14.79862 -14.33724 -14.14185 -13.92255 -13.85924 -13.59095 -13.05124 -12.94992 -12.68281 -12.53998 -12.24855 -11.85164 -11.69181 -11.61411 -11.52391 -10.96970 -10.80262 -9.98861 -9.63635 -9.24690 -8.29442 -6.45944 0.31278 1.05840 1.39448 1.44357 1.48418 1.56262 1.72089 2.25917 2.34178 2.56748 2.75262 3.05897 3.44003 3.77553 3.82731 3.85638 3.94221 4.12394 4.48361 4.60890 4.76761 4.80808 4.92812 5.05694 5.06452 5.21084 5.36209 5.43362 5.63196 5.73932 5.82211 6.04973 6.62160 6.79255 7.19369 7.34243 8.82541 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.004655 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.955575 B = 6013.994933 C = 7309.225089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.270 3.730 10 N -0.692 5.692 11 C 0.570 3.430 12 O -0.596 6.596 13 C -0.054 4.054 14 C -0.125 4.125 15 C -0.133 4.133 16 Cl -0.039 7.039 17 C 0.044 3.956 18 N -0.373 5.373 19 C 0.014 3.986 20 C -0.144 4.144 21 C -0.167 4.167 22 H 0.269 0.731 23 H -0.007 1.007 24 H -0.007 1.007 25 H 0.409 0.591 26 H 0.165 0.835 27 H 0.212 0.788 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -19.420 0.913 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.148 3.852 10 N -0.341 5.341 11 C 0.358 3.642 12 O -0.480 6.480 13 C -0.167 4.167 14 C -0.152 4.152 15 C -0.165 4.165 16 Cl -0.010 7.010 17 C -0.093 4.093 18 N -0.044 5.044 19 C -0.089 4.089 20 C -0.181 4.181 21 C -0.204 4.204 22 H 0.078 0.922 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.245 0.755 26 H 0.182 0.818 27 H 0.229 0.771 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.991 -19.565 0.881 21.152 hybrid contribution 0.373 1.234 -0.060 1.290 sum 8.364 -18.331 0.821 20.166 Atomic orbital electron populations 1.70127 1.08207 1.28682 1.49785 1.26021 0.95764 1.03757 0.93713 0.85214 0.77940 0.76614 0.79510 1.18705 1.20990 1.18674 1.21561 0.94346 0.90440 1.53248 0.89840 1.18618 0.88424 0.83627 0.94532 1.45904 1.11529 1.04655 1.72031 1.17442 0.86961 0.83095 0.76694 1.90703 1.18251 1.85333 1.53718 1.19875 0.93440 0.84598 1.18801 1.21445 0.90812 0.98390 1.04525 1.19864 0.86169 0.93583 1.16899 1.98316 1.12473 1.92598 1.97624 1.22112 0.82160 0.99179 1.05854 1.43393 1.06103 1.04392 1.50560 1.22458 0.82296 0.93629 1.10468 1.23639 1.06006 0.91330 0.97111 1.23566 1.04664 0.98848 0.93364 0.92180 0.98946 0.98884 0.75530 0.81760 0.77143 0.85568 0.85653 0.85368 0.86592 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.98 42.35 29.54 68.60 2.03 44.37 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.56 -30.54 9.28 25.60 0.24 -30.30 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.98 5.43 85.63 0.47 15.45 16 10 N -0.69 -30.86 5.53 -470.82 -2.61 -33.46 16 11 C 0.57 24.71 7.77 86.44 0.67 25.39 16 12 O -0.60 -29.84 14.73 -4.32 -0.06 -29.91 16 13 C -0.05 -1.83 6.88 40.35 0.28 -1.55 16 14 C -0.13 -3.57 10.35 22.59 0.23 -3.34 16 15 C -0.13 -3.20 6.66 22.04 0.15 -3.05 16 16 Cl -0.04 -0.80 29.30 -2.72 -0.08 -0.88 16 17 C 0.04 0.95 10.60 83.48 0.88 1.84 16 18 N -0.37 -10.40 3.11 -488.55 -1.52 -11.92 16 19 C 0.01 0.35 6.28 44.99 0.28 0.63 16 20 C -0.14 -2.06 9.98 30.62 0.31 -1.75 16 21 C -0.17 -2.96 10.33 30.62 0.32 -2.64 16 22 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 23 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 24 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.41 15.46 7.22 -92.71 -0.67 14.79 16 26 H 0.16 4.18 7.45 -2.91 -0.02 4.16 16 27 H 0.21 2.72 7.07 -2.91 -0.02 2.70 16 28 H 0.13 4.10 6.41 -2.39 -0.02 4.09 16 29 H 0.13 1.24 6.87 -2.38 -0.02 1.22 16 30 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -70.46 297.47 2.82 -67.65 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.49 Total: 18.19 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.28 Total: 1.53 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -3.84 Total: -100.96 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.06 Total: -29.91 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -70.46 2.82 -67.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.857 kcal (2) G-P(sol) polarization free energy of solvation -70.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds