Wall clock time and date at job start Mon Mar 30 2020 07:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86804 * 119.99901 * 2 1 4 4 H 1.48496 * 109.46908 * 239.99663 * 3 2 1 5 5 H 1.48504 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47068 * 119.99753 * 3 2 1 7 7 C 1.37867 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99991 * 179.72656 * 7 2 1 9 9 C 1.50701 * 120.00260 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.63900 * 300.42202 * 9 7 2 11 11 C 1.55159 * 110.72330 * 177.27993 * 9 7 2 12 12 C 1.54905 * 101.58182 * 206.13510 * 11 9 7 13 13 N 1.47429 * 104.83389 * 37.01062 * 12 11 9 14 14 C 1.34773 * 125.64781 * 155.83824 * 13 12 11 15 15 O 1.21695 * 119.99810 * 178.08732 * 14 13 12 16 16 C 1.46664 * 120.00144 * 358.08057 * 14 13 12 17 17 C 1.37896 * 126.22471 * 187.70467 * 16 14 13 18 18 C 1.39892 * 107.09721 * 179.85061 * 17 16 14 19 19 Cl 1.73597 * 126.07297 * 180.12382 * 18 17 16 20 20 C 1.35522 * 107.84829 * 0.41280 * 18 17 16 21 21 N 1.35631 * 108.85220 * 359.74643 * 20 18 17 22 22 H 0.96996 * 125.67340 * 180.02562 * 21 20 18 23 23 C 1.47315 * 108.73435 * 335.71409 * 13 12 11 24 24 H 0.96994 * 119.99821 * 0.02562 * 1 2 3 25 25 H 1.09005 * 111.00052 * 324.21006 * 11 9 7 26 26 H 1.08995 * 111.00493 * 88.02089 * 11 9 7 27 27 H 1.09003 * 110.36539 * 155.84686 * 12 11 9 28 28 H 1.08996 * 110.36801 * 278.16580 * 12 11 9 29 29 H 1.08004 * 126.45014 * 359.97438 * 17 16 14 30 30 H 1.07994 * 125.56822 * 179.72193 * 20 18 17 31 31 H 1.09002 * 110.06634 * 241.87263 * 23 13 12 32 32 H 1.09001 * 109.84984 * 120.61590 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 -0.0039 9 6 1.2511 -2.4991 0.0005 10 1 0.6113 -2.5734 0.8799 11 6 2.2320 -3.6994 -0.0677 12 6 1.3473 -4.7870 -0.7264 13 7 0.5251 -4.0597 -1.7106 14 6 -0.0410 -4.5954 -2.8101 15 8 -0.7310 -3.9051 -3.5370 16 6 0.1745 -6.0103 -3.1307 17 6 -0.2134 -6.6519 -4.2880 18 6 0.1931 -7.9856 -4.1749 19 17 -0.0456 -9.2311 -5.3604 20 6 0.8006 -8.1341 -2.9726 21 7 0.7955 -6.9405 -2.3286 22 1 1.1680 -6.7706 -1.4492 23 6 0.4220 -2.6510 -1.2923 24 1 -0.4849 0.8400 -0.0004 25 1 3.0934 -3.4648 -0.6931 26 1 2.5476 -4.0032 0.9303 27 1 1.9687 -5.5300 -1.2263 28 1 0.7122 -5.2631 0.0206 29 1 -0.7316 -6.2078 -5.1251 30 1 1.2199 -9.0529 -2.5899 31 1 -0.6191 -2.3940 -1.0973 32 1 0.8264 -2.0033 -2.0702 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701318364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:33 Heat of formation + Delta-G solvation = 10.589060 kcal Electronic energy + Delta-G solvation = -17888.604623 eV Core-core repulsion = 14875.977184 eV Total energy + Delta-G solvation = -3012.627439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = -0.14 seconds Orbital eigenvalues (eV) -41.45145 -38.95638 -36.84179 -36.43688 -33.18766 -31.24842 -30.72338 -29.26165 -28.15305 -25.18955 -23.49604 -21.37174 -20.90927 -20.16212 -19.66979 -17.51367 -16.67719 -15.94965 -15.60157 -14.96104 -14.59719 -14.50993 -14.15983 -13.60879 -13.35194 -12.92688 -12.70750 -12.54306 -12.23212 -11.92423 -11.80866 -11.53077 -10.99457 -10.88839 -10.76505 -10.65420 -10.06000 -9.71322 -9.46500 -9.20137 -8.93867 -8.59194 -8.38613 -7.98093 -6.18434 -4.24028 1.48182 2.14113 2.41840 3.06451 3.25040 3.31405 3.32393 3.51122 3.61984 4.32598 4.72218 4.82581 5.03512 5.12046 5.16696 5.39639 5.48728 5.53429 5.86395 6.00550 6.26951 6.39844 6.52856 6.56425 6.73388 6.80820 6.88347 7.14674 7.35774 7.55099 7.78662 8.01342 8.17633 8.53210 8.78860 9.42665 10.91417 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.047141 B = 0.003967 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.822959 B = 7056.104027 C = 7376.767995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.046 3.954 10 H 0.042 0.958 11 C -0.126 4.126 12 C 0.084 3.916 13 N -0.612 5.612 14 C 0.589 3.411 15 O -0.532 6.532 16 C -0.020 4.020 17 C -0.107 4.107 18 C -0.125 4.125 19 Cl -0.055 7.055 20 C 0.026 3.974 21 N -0.534 5.534 22 H 0.426 0.574 23 C 0.126 3.874 24 H 0.266 0.734 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.066 0.934 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -16.345 -2.779 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.061 0.939 11 C -0.164 4.164 12 C -0.039 4.039 13 N -0.345 5.345 14 C 0.377 3.623 15 O -0.409 6.409 16 C -0.134 4.134 17 C -0.133 4.133 18 C -0.158 4.158 19 Cl -0.027 7.027 20 C -0.112 4.112 21 N -0.137 5.137 22 H 0.272 0.728 23 C 0.006 3.994 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.195 0.805 31 H 0.084 0.916 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.184 -15.868 -3.147 16.324 hybrid contribution 0.583 0.710 0.263 0.956 sum 2.767 -15.158 -2.884 15.676 Atomic orbital electron populations 1.69925 1.05976 1.27361 1.48939 1.25039 0.94926 0.99477 0.94389 0.86582 0.79582 0.82748 0.78704 1.20110 1.21158 1.20137 1.20944 0.92909 0.89682 1.52544 0.92052 1.19744 0.92275 0.92450 0.92823 0.93946 1.22875 0.98471 0.95614 0.99441 1.22582 0.93690 0.96172 0.91479 1.48959 1.49610 1.13438 1.22500 1.16641 0.80429 0.84364 0.80856 1.90840 1.39420 1.60941 1.49715 1.20651 1.07659 0.90867 0.94191 1.21124 1.02930 0.91328 0.97945 1.19933 1.11345 0.91019 0.93508 1.98312 1.96275 1.51749 1.56321 1.21720 1.05544 0.90376 0.93526 1.42887 1.45008 1.07963 1.17824 0.72803 1.22608 1.01669 0.76401 0.98720 0.92467 0.91174 0.91109 0.92449 0.91665 0.82664 0.80500 0.91595 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 12.56 55.43 0.70 -23.81 16 2 C 0.07 1.72 5.34 -17.82 -0.10 1.63 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.52 -13.33 8.39 -34.44 -0.29 -13.62 16 8 H 0.06 1.53 7.77 -52.48 -0.41 1.12 16 9 C 0.05 1.05 2.83 -89.93 -0.25 0.79 16 10 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 11 C -0.13 -2.17 6.50 -24.58 -0.16 -2.33 16 12 C 0.08 1.25 5.46 -2.53 -0.01 1.24 16 13 N -0.61 -11.81 3.33 -171.82 -0.57 -12.38 16 14 C 0.59 11.58 7.81 -12.86 -0.10 11.48 16 15 O -0.53 -12.43 17.22 5.19 0.09 -12.34 16 16 C -0.02 -0.31 6.84 -81.98 -0.56 -0.87 16 17 C -0.11 -1.58 10.65 -39.09 -0.42 -2.00 16 18 C -0.12 -1.55 6.66 -39.93 -0.27 -1.81 16 19 Cl -0.05 -0.61 29.30 -51.86 -1.52 -2.13 16 20 C 0.03 0.26 11.87 -16.84 -0.20 0.06 16 21 N -0.53 -6.22 5.38 -9.35 -0.05 -6.27 16 22 H 0.43 4.06 5.22 -40.82 -0.21 3.85 16 23 C 0.13 2.94 5.62 -2.90 -0.02 2.92 16 24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.68 5.54 -51.93 -0.29 0.39 16 28 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 29 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 30 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.07 1.69 8.07 -51.93 -0.42 1.27 16 32 H 0.06 1.68 7.81 -51.93 -0.41 1.27 16 LS Contribution 287.91 15.07 4.34 4.34 Total: -1.00 -29.92 287.91 -7.81 -37.73 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.40 Total: 1.92 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.37 Total: -2.50 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.07 Total: -42.46 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.52 Total: -2.13 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.92 -7.81 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.315 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.14 seconds