Wall clock time and date at job start Mon Mar 30 2020 07:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99593 * 2 1 4 4 H 1.48497 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47065 * 299.99894 * 3 2 1 6 6 H 1.48497 * 109.47351 * 59.99996 * 3 2 1 7 7 C 1.37874 * 120.00662 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99591 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47139 * 180.02562 * 10 9 7 12 12 O 1.42898 * 109.47109 * 180.02562 * 11 10 9 13 13 C 1.35953 * 117.00215 * 179.97438 * 12 11 10 14 14 C 1.38913 * 119.94604 * 0.02562 * 13 12 11 15 15 C 1.38145 * 120.30277 * 180.02562 * 14 13 12 16 16 C 1.38315 * 120.17979 * 359.97438 * 15 14 13 17 17 F 1.35105 * 120.05366 * 179.97438 * 16 15 14 18 18 C 1.39852 * 119.88558 * 359.97438 * 16 15 14 19 19 C 1.47576 * 120.14491 * 179.97438 * 18 16 15 20 20 O 1.21494 * 119.99908 * 359.72772 * 19 18 16 21 21 O 1.34732 * 120.00195 * 179.97438 * 19 18 16 22 22 C 1.38315 * 119.94578 * 180.27524 * 13 12 11 23 23 H 0.96992 * 120.00781 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47225 * 60.00334 * 9 7 2 25 25 H 1.08997 * 109.47239 * 299.99578 * 9 7 2 26 26 H 1.08995 * 109.46627 * 60.00006 * 10 9 7 27 27 H 1.08997 * 109.47058 * 300.00097 * 10 9 7 28 28 H 1.08998 * 109.47206 * 59.99935 * 11 10 9 29 29 H 1.08997 * 109.47107 * 299.99923 * 11 10 9 30 30 H 1.08000 * 119.84728 * 359.97438 * 14 13 12 31 31 H 1.07997 * 119.90964 * 179.97438 * 15 14 13 32 32 H 0.96692 * 117.00096 * 180.02562 * 21 19 18 33 33 H 1.08004 * 120.09693 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 8 2.4092 -6.0731 0.0005 13 6 1.8897 -7.3295 0.0006 14 6 0.5124 -7.5103 -0.0005 15 6 -0.0234 -8.7836 0.0001 16 6 0.8089 -9.8883 0.0013 17 9 0.2821 -11.1324 0.0024 18 6 2.1967 -9.7151 0.0012 19 6 3.0901 -10.8898 0.0030 20 8 2.6204 -12.0102 0.0094 21 8 4.4266 -10.7196 0.0024 22 6 2.7334 -8.4255 0.0069 23 1 -0.4851 0.8399 0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8722 -3.6042 -0.8894 28 1 0.8542 -5.0446 -0.8903 29 1 0.8537 -5.0451 0.8896 30 1 -0.1425 -6.6515 -0.0009 31 1 -1.0952 -8.9169 -0.0002 32 1 4.9709 -11.5188 0.0032 33 1 3.8042 -8.2847 0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703755127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:05 Heat of formation + Delta-G solvation = -163.292134 kcal Electronic energy + Delta-G solvation = -19049.459544 eV Core-core repulsion = 15568.662925 eV Total energy + Delta-G solvation = -3480.796620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.02963 -40.67208 -39.85396 -37.35407 -36.33710 -34.12564 -32.03497 -31.77489 -29.69661 -27.07457 -25.22384 -23.35055 -23.11853 -21.27500 -20.39731 -18.69882 -18.14743 -17.48889 -16.81935 -16.32635 -16.30753 -16.21402 -15.87900 -15.36523 -14.61637 -14.50443 -14.30821 -13.68642 -13.54005 -13.18917 -12.83269 -12.33292 -12.16184 -12.04499 -11.83128 -11.52109 -11.09614 -10.89645 -10.73514 -10.63392 -10.58391 -9.87715 -9.62341 -9.59289 -9.22608 -8.45616 -8.31012 -6.10493 -4.13343 0.22332 0.93305 2.21126 2.59112 3.19896 3.26009 3.30763 3.34051 3.38513 3.90824 4.33681 4.39010 4.52925 4.85196 4.95069 5.01986 5.26027 5.37031 5.39653 5.48993 5.69173 5.74553 5.83831 5.98219 6.11982 6.24879 6.43295 6.56293 6.87861 7.34618 7.51628 7.56570 7.61733 7.87718 8.28858 8.93097 9.51699 11.00977 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.044534 B = 0.002955 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.577104 B = 9474.738983 C =10077.565004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.055 3.945 12 O -0.308 6.308 13 C 0.121 3.879 14 C -0.144 4.144 15 C -0.123 4.123 16 C 0.117 3.883 17 F -0.120 7.120 18 C -0.130 4.130 19 C 0.530 3.470 20 O -0.502 6.502 21 O -0.507 6.507 22 C -0.074 4.074 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.416 0.584 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -19.161 -0.005 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.019 4.019 12 O -0.221 6.221 13 C 0.074 3.926 14 C -0.163 4.163 15 C -0.142 4.142 16 C 0.097 3.903 17 F -0.098 7.098 18 C -0.133 4.133 19 C 0.374 3.626 20 O -0.390 6.390 21 O -0.319 6.319 22 C -0.093 4.093 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.275 0.725 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.995 -18.966 -0.002 19.200 hybrid contribution 0.350 0.272 -0.003 0.443 sum 3.345 -18.694 -0.004 18.991 Atomic orbital electron populations 1.69955 1.06092 1.26737 1.50639 1.25020 0.94882 0.99407 0.95117 0.86495 0.80140 0.83511 0.77640 1.19633 1.20947 1.20951 1.21209 0.93211 0.90665 1.50924 0.92354 1.19058 0.93810 0.90845 0.97572 1.21741 0.99959 0.90737 1.02203 1.23341 0.92300 0.85171 1.01128 1.86194 1.37178 1.11382 1.87384 1.18968 0.91411 0.86172 0.96076 1.21575 0.94585 0.98305 1.01810 1.20924 1.00724 0.90463 1.02060 1.17486 0.89643 0.80509 1.02699 1.91579 1.86378 1.38524 1.93327 1.18762 0.90772 0.92082 1.11642 1.20484 0.81214 0.88270 0.72630 1.90957 1.76801 1.25783 1.45504 1.84565 1.18360 1.43241 1.85778 1.20577 1.01199 0.88017 0.99501 0.92911 0.96272 0.96259 0.92010 0.92016 0.91951 0.91963 0.83224 0.83348 0.72499 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.08 5.52 -26.73 -0.15 -2.22 16 11 C 0.05 0.84 4.74 37.16 0.18 1.01 16 12 O -0.31 -4.53 10.13 -19.59 -0.20 -4.73 16 13 C 0.12 1.51 6.68 -39.30 -0.26 1.25 16 14 C -0.14 -1.58 9.03 -39.37 -0.36 -1.94 16 15 C -0.12 -1.26 10.01 -39.59 -0.40 -1.65 16 16 C 0.12 1.40 7.28 -38.95 -0.28 1.12 16 17 F -0.12 -1.61 15.54 2.25 0.04 -1.57 16 18 C -0.13 -1.55 5.88 -104.94 -0.62 -2.16 16 19 C 0.53 6.14 8.27 34.54 0.29 6.42 16 20 O -0.50 -7.16 16.12 -19.26 -0.31 -7.47 16 21 O -0.51 -4.16 12.68 -40.58 -0.51 -4.68 16 22 C -0.07 -0.85 9.55 -39.01 -0.37 -1.22 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 29 H 0.06 0.89 7.65 -51.93 -0.40 0.49 16 30 H 0.15 1.47 6.27 -52.49 -0.33 1.14 16 31 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.42 1.43 9.11 45.56 0.42 1.84 16 33 H 0.16 1.61 7.61 -52.48 -0.40 1.21 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -31.83 300.10 -6.04 -37.86 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.76 Total: -2.78 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.52 Total: -11.95 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.74 Total: -25.19 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -1.02 Total: -16.88 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.83 -6.04 -37.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703755127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.428 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds