Wall clock time and date at job start Mon Mar 30 2020 07:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36877 * 119.99586 * 2 1 4 4 H 1.08006 * 119.99629 * 205.18695 * 3 2 1 5 5 C 1.39010 * 120.00159 * 25.18854 * 3 2 1 6 6 N 1.31392 * 119.99912 * 20.27716 * 5 3 2 7 7 Si 1.86803 * 119.99913 * 200.27353 * 5 3 2 8 8 H 1.48497 * 109.47182 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47221 * 120.00176 * 7 5 3 10 10 H 1.48505 * 109.46931 * 239.99934 * 7 5 3 11 11 C 1.34770 * 120.00196 * 179.97438 * 2 1 3 12 12 O 1.21743 * 119.99973 * 184.24808 * 11 2 1 13 13 C 1.46533 * 120.00335 * 4.25097 * 11 2 1 14 14 C 1.38028 * 126.22993 * 353.57516 * 13 11 2 15 15 C 1.39855 * 107.09617 * 180.02562 * 14 13 11 16 16 Cl 1.73596 * 126.06350 * 179.97438 * 15 14 13 17 17 C 1.35553 * 107.86522 * 0.26417 * 15 14 13 18 18 N 1.35683 * 108.85914 * 359.56767 * 17 15 14 19 19 C 1.46514 * 125.67580 * 180.16844 * 18 17 15 20 20 C 1.52999 * 117.49823 * 13.67801 * 19 18 17 21 21 C 1.52995 * 117.50057 * 305.01343 * 19 18 17 22 22 H 1.09001 * 109.47039 * 240.41057 * 1 2 3 23 23 H 1.08991 * 109.47225 * 0.41401 * 1 2 3 24 24 H 1.09005 * 109.46662 * 120.41550 * 1 2 3 25 25 H 0.97008 * 119.99816 * 180.02562 * 6 5 3 26 26 H 1.07995 * 126.44665 * 359.97438 * 14 13 11 27 27 H 1.08001 * 125.56874 * 179.73918 * 17 15 14 28 28 H 1.08995 * 115.54448 * 159.34368 * 19 18 17 29 29 H 1.08995 * 117.49928 * 359.97438 * 20 19 18 30 30 H 1.09002 * 117.49868 * 145.01963 * 20 19 18 31 31 H 1.08994 * 117.50132 * 214.97815 * 21 19 18 32 32 H 1.09001 * 117.49889 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1523 1.2299 -0.3981 5 6 1.5533 2.3320 0.5124 6 7 0.5366 2.2309 1.3385 7 14 2.1980 4.0166 0.0264 8 1 3.3405 3.8585 -0.9090 9 1 1.1171 4.7872 -0.6391 10 1 2.6486 4.7433 1.2406 11 6 2.1389 -1.1671 0.0005 12 8 3.3538 -1.1685 0.0786 13 6 1.4094 -2.4345 -0.0930 14 6 0.0383 -2.5908 -0.0620 15 6 -0.2222 -3.9598 -0.1799 16 17 -1.7905 -4.7039 -0.1961 17 6 0.9674 -4.6030 -0.2727 18 7 1.9665 -3.6861 -0.2271 19 6 3.3999 -3.9799 -0.3016 20 6 3.8111 -5.3805 -0.7599 21 6 3.9700 -4.9777 0.7084 22 1 -0.3633 -0.5074 0.8937 23 1 -0.3633 1.0275 -0.0074 24 1 -0.3633 -0.5203 -0.8863 25 1 0.1205 3.0311 1.6957 26 1 -0.6950 -1.8041 0.0357 27 1 1.0984 -5.6706 -0.3702 28 1 4.0357 -3.1461 -0.5992 29 1 3.0152 -6.0835 -1.0055 30 1 4.7177 -5.4683 -1.3586 31 1 4.9811 -4.8007 1.0750 32 1 3.2787 -5.4153 1.4286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705981849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:39 Heat of formation + Delta-G solvation = 46.405158 kcal Electronic energy + Delta-G solvation = -18255.018437 eV Core-core repulsion = 15243.944100 eV Total energy + Delta-G solvation = -3011.074336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.52974 -39.92767 -38.01053 -37.11302 -36.75913 -33.91461 -31.53639 -30.52992 -28.13775 -26.82080 -24.06529 -23.47280 -22.99779 -21.68187 -19.89177 -19.17771 -18.32440 -17.37541 -16.55667 -16.44867 -16.12332 -15.95675 -15.36510 -15.15454 -14.67281 -14.19691 -14.08817 -13.72135 -13.67765 -13.34959 -13.01475 -12.97793 -12.56108 -12.52346 -12.15305 -12.06737 -11.69729 -11.62869 -11.53007 -10.96105 -10.50250 -9.73852 -9.50025 -9.15925 -8.43569 -6.03896 0.50842 1.14605 1.38478 1.42363 1.54247 1.56796 1.87670 2.28343 2.39647 2.77881 3.02555 3.08146 3.49262 3.86777 3.90971 3.93820 4.03007 4.23009 4.59728 4.61088 4.64781 4.81939 4.82269 4.87479 4.99582 5.06955 5.28168 5.39862 5.53534 5.84529 6.06233 6.21407 6.43126 7.06208 7.32503 7.92927 8.59621 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.006199 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.902754 B = 4515.854423 C = 5727.857042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.434 5.434 3 C -0.344 4.344 4 H 0.076 0.924 5 C 0.001 3.999 6 N -0.883 5.883 7 Si 0.994 3.006 8 H -0.271 1.271 9 H -0.261 1.261 10 H -0.275 1.275 11 C 0.492 3.508 12 O -0.633 6.633 13 C -0.030 4.030 14 C -0.168 4.168 15 C -0.132 4.132 16 Cl -0.042 7.042 17 C 0.029 3.971 18 N -0.378 5.378 19 C 0.017 3.983 20 C -0.141 4.141 21 C -0.169 4.169 22 H 0.054 0.946 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.279 0.721 26 H 0.174 0.826 27 H 0.209 0.791 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -13.662 -3.559 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.150 5.150 3 C -0.472 4.472 4 H 0.093 0.907 5 C -0.202 4.202 6 N -0.520 5.520 7 Si 0.817 3.183 8 H -0.195 1.195 9 H -0.185 1.185 10 H -0.200 1.200 11 C 0.283 3.717 12 O -0.524 6.524 13 C -0.144 4.144 14 C -0.194 4.194 15 C -0.165 4.165 16 Cl -0.013 7.013 17 C -0.107 4.107 18 N -0.050 5.050 19 C -0.085 4.085 20 C -0.178 4.178 21 C -0.207 4.207 22 H 0.072 0.928 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.191 0.809 27 H 0.226 0.774 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.152 -13.598 -3.435 14.072 hybrid contribution 0.070 1.027 0.148 1.040 sum -1.082 -12.571 -3.286 13.038 Atomic orbital electron populations 1.22265 0.79794 1.04469 0.99041 1.43458 1.06741 1.03995 1.60764 1.19665 1.01536 0.85321 1.40661 0.90661 1.26193 0.96949 1.03396 0.93688 1.70050 1.24042 1.31662 1.26245 0.84884 0.78649 0.76454 0.78353 1.19546 1.18521 1.20040 1.17377 0.86768 0.83347 0.84206 1.90537 1.15084 1.87614 1.59134 1.20129 0.92358 0.86158 1.15759 1.22380 0.93599 0.96792 1.06626 1.19919 0.86938 0.92620 1.17029 1.98286 1.23717 1.81579 1.97763 1.22014 0.84714 0.96487 1.07467 1.43364 1.05877 1.04518 1.51233 1.22394 0.78924 0.96999 1.10203 1.23616 1.04776 0.92592 0.96846 1.23534 1.03458 1.00064 0.93621 0.92786 0.89333 0.91954 0.91100 0.80924 0.77421 0.85849 0.85841 0.85193 0.86582 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.00 7.53 127.77 0.96 4.96 16 2 N -0.43 -23.53 2.99 -663.61 -1.99 -25.52 16 3 C -0.34 -19.82 9.16 84.09 0.77 -19.05 16 4 H 0.08 4.60 7.55 -2.91 -0.02 4.58 16 5 C 0.00 0.05 4.87 84.94 0.41 0.46 16 6 N -0.88 -46.81 11.02 21.67 0.24 -46.57 16 7 Si 0.99 41.63 29.60 68.60 2.03 43.66 16 8 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 9 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 C 0.49 26.26 7.58 86.41 0.66 26.92 16 12 O -0.63 -37.17 14.47 -4.48 -0.06 -37.24 16 13 C -0.03 -1.31 6.82 40.34 0.28 -1.04 16 14 C -0.17 -6.36 8.78 22.61 0.20 -6.16 16 15 C -0.13 -4.15 6.66 22.04 0.15 -4.00 16 16 Cl -0.04 -1.09 29.30 -2.72 -0.08 -1.17 16 17 C 0.03 0.83 10.59 83.48 0.88 1.71 16 18 N -0.38 -13.38 3.11 -488.45 -1.52 -14.90 16 19 C 0.02 0.54 6.29 44.99 0.28 0.83 16 20 C -0.14 -2.67 9.98 30.62 0.31 -2.36 16 21 C -0.17 -3.87 10.32 30.62 0.32 -3.56 16 22 H 0.05 2.41 6.55 -2.39 -0.02 2.40 16 23 H 0.09 4.30 5.49 -2.39 -0.01 4.29 16 24 H 0.06 2.51 6.41 -2.38 -0.02 2.49 16 25 H 0.28 13.60 8.31 -92.70 -0.77 12.83 16 26 H 0.17 6.37 4.07 -2.91 -0.01 6.36 16 27 H 0.21 3.96 7.09 -2.91 -0.02 3.94 16 28 H 0.12 4.82 6.41 -2.39 -0.02 4.80 16 29 H 0.12 1.79 6.88 -2.39 -0.02 1.77 16 30 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.64 283.59 4.99 -63.65 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.16 Total: 19.38 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.21 Total: -1.30 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.27 Total: -86.99 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.06 Total: -37.24 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -68.64 4.99 -63.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705981849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.058 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds