Wall clock time and date at job start Mon Mar 30 2020 06:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47020 * 2 1 4 4 C 1.52993 * 109.47554 * 120.00580 * 2 1 3 5 5 C 1.50698 * 109.47398 * 185.00009 * 4 2 1 6 6 H 1.07995 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.37888 * 120.00075 * 179.72388 * 5 4 2 8 8 N 1.31507 * 119.99620 * 0.27624 * 7 5 4 9 9 Si 1.86795 * 119.99920 * 180.27645 * 7 5 4 10 10 H 1.48501 * 109.47088 * 90.00102 * 9 7 5 11 11 H 1.48501 * 109.47209 * 209.99987 * 9 7 5 12 12 H 1.48503 * 109.47382 * 330.00237 * 9 7 5 13 13 O 1.42901 * 109.47078 * 240.00857 * 2 1 3 14 14 C 1.35618 * 117.00237 * 84.94997 * 13 2 1 15 15 C 1.38683 * 120.15715 * 354.50954 * 14 13 2 16 16 C 1.38046 * 120.12367 * 179.97438 * 15 14 13 17 17 C 1.38721 * 120.44708 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.84571 * 179.97438 * 17 16 15 19 19 C 1.37779 * 120.31012 * 0.02562 * 17 16 15 20 20 C 1.40027 * 119.86881 * 359.67918 * 19 17 16 21 21 C 1.46781 * 120.21997 * 180.29742 * 20 19 17 22 22 O 1.21296 * 119.99754 * 180.27514 * 21 20 19 23 23 H 1.09004 * 109.46609 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47207 * 299.99329 * 1 2 3 25 25 H 1.08997 * 109.47355 * 59.99789 * 1 2 3 26 26 H 1.09006 * 109.47188 * 64.99761 * 4 2 1 27 27 H 1.09003 * 109.47532 * 305.00201 * 4 2 1 28 28 H 0.97007 * 120.00012 * 179.97438 * 8 7 5 29 29 H 1.08001 * 119.93698 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.77470 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.06751 * 179.97438 * 19 17 16 32 32 H 1.07995 * 119.99772 * 0.27180 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3125 6 1 4.0790 -0.0862 0.5391 7 6 4.2300 -1.1884 2.3609 8 7 3.5760 -1.8327 3.3024 9 14 6.0910 -1.0499 2.4435 10 1 6.4633 0.1756 3.1951 11 1 6.6459 -2.2417 3.1341 12 1 6.6434 -0.9734 1.0672 13 8 2.0063 -0.6735 -1.1669 14 6 2.1112 0.0611 -2.3021 15 6 1.6579 1.3715 -2.3284 16 6 1.7656 2.1187 -3.4841 17 6 2.3260 1.5683 -4.6275 18 17 2.4531 2.5219 -6.0725 19 6 2.7812 0.2679 -4.6219 20 6 2.6842 -0.5000 -3.4550 21 6 3.1727 -1.8840 -3.4385 22 8 3.0820 -2.5471 -2.4270 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7517 -1.7716 1.2054 27 1 1.6054 -0.2620 2.1369 28 1 4.0601 -2.2365 4.0398 29 1 1.2199 1.8081 -1.4430 30 1 1.4111 3.1388 -3.4982 31 1 3.2165 -0.1569 -5.5144 32 1 3.6127 -2.3119 -4.3271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709956873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:18 Heat of formation + Delta-G solvation = -61.787131 kcal Electronic energy + Delta-G solvation = -17969.212760 eV Core-core repulsion = 14921.154102 eV Total energy + Delta-G solvation = -3048.058657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30474 -38.16253 -37.62968 -36.16730 -33.50676 -31.88477 -31.28170 -29.43492 -27.50680 -24.69511 -23.64718 -22.77646 -20.90625 -20.08853 -17.92080 -16.74473 -16.40857 -16.15104 -15.02897 -14.95762 -14.66744 -14.48514 -14.04826 -13.66029 -13.42537 -13.07907 -12.76389 -12.27834 -12.12570 -11.96920 -11.69248 -11.40392 -11.26255 -11.04431 -10.81585 -10.74625 -10.40713 -10.10751 -9.47752 -9.32624 -9.13408 -9.12544 -8.37482 -7.92944 -6.00555 -4.01437 0.72385 1.29049 2.10454 2.65312 3.33149 3.39661 3.44831 3.62881 3.78284 4.35925 4.47456 4.70708 4.87387 5.08280 5.35498 5.40052 5.47115 5.53794 5.62995 5.70882 5.82531 5.89330 6.05764 6.12799 6.25769 6.49487 6.55660 6.66381 7.42162 7.55951 7.82689 7.94752 7.97056 8.34815 9.00486 9.61563 11.11061 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.005232 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.417428 B = 5350.236167 C = 5613.102021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.253 6.253 14 C 0.211 3.789 15 C -0.219 4.219 16 C -0.038 4.038 17 C -0.104 4.104 18 Cl -0.080 7.080 19 C -0.024 4.024 20 C -0.227 4.227 21 C 0.369 3.631 22 O -0.419 6.419 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.261 0.739 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 7.125 -16.354 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.023 3.977 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 O -0.162 6.162 14 C 0.160 3.840 15 C -0.238 4.238 16 C -0.057 4.057 17 C -0.130 4.130 18 Cl -0.052 7.052 19 C -0.043 4.043 20 C -0.229 4.229 21 C 0.224 3.776 22 O -0.289 6.289 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.479 6.510 -15.674 17.553 hybrid contribution 0.950 0.576 -0.077 1.114 sum -3.529 7.086 -15.750 17.628 Atomic orbital electron populations 1.22426 0.96578 1.02939 1.01589 1.23098 0.92157 0.97207 0.85275 0.91713 1.19258 0.96699 0.96675 0.88298 1.21044 0.91561 1.34696 1.07659 0.92833 1.24947 0.98422 0.95159 0.95681 1.69941 1.35582 1.36001 1.12017 0.86585 0.85778 0.77487 0.78155 1.20715 1.21125 1.19885 1.86504 1.77060 1.37053 1.15551 1.19623 0.87496 0.89513 0.87413 1.21400 1.08032 0.94470 0.99912 1.20984 0.94512 0.99688 0.90524 1.20488 1.09973 0.93462 0.89107 1.98343 1.97302 1.72132 1.37411 1.20991 0.94867 0.91396 0.97027 1.20390 1.10245 0.99449 0.92812 1.23612 0.76727 0.85564 0.91653 1.90709 1.42589 1.60729 1.34859 0.91646 0.91046 0.93303 0.95008 0.94243 0.92944 0.83707 0.84780 0.83977 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.17 37.15 0.34 -2.57 16 2 C 0.08 1.58 2.17 -26.74 -0.06 1.52 16 3 H 0.06 1.24 6.31 -51.93 -0.33 0.91 16 4 C 0.03 0.70 4.68 -27.89 -0.13 0.57 16 5 C -0.51 -14.62 8.88 -34.44 -0.31 -14.93 16 6 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 O -0.25 -5.37 7.62 -40.47 -0.31 -5.68 16 14 C 0.21 3.66 6.62 -38.59 -0.26 3.41 16 15 C -0.22 -3.17 8.23 -39.49 -0.33 -3.49 16 16 C -0.04 -0.46 9.81 -39.47 -0.39 -0.85 16 17 C -0.10 -1.23 6.31 -39.57 -0.25 -1.48 16 18 Cl -0.08 -0.84 28.94 -51.86 -1.50 -2.34 16 19 C -0.02 -0.28 9.57 -39.08 -0.37 -0.66 16 20 C -0.23 -3.42 5.88 -104.95 -0.62 -4.03 16 21 C 0.37 5.62 11.44 34.18 0.39 6.01 16 22 O -0.42 -8.81 15.98 -16.37 -0.26 -9.07 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.68 6.91 -51.93 -0.36 0.32 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.15 1.96 5.42 -52.49 -0.28 1.67 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -32.87 296.35 -7.43 -40.30 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -3.47 Total: -3.73 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.07 Total: -14.88 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.57 Total: -14.75 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.87 -7.43 -40.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709956873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.490 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds