Wall clock time and date at job start Mon Mar 30 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47020 * 2 1 4 4 C 1.52993 * 109.47554 * 120.00580 * 2 1 3 5 5 C 1.50698 * 109.47398 * 185.00009 * 4 2 1 6 6 H 1.07995 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.37888 * 120.00075 * 179.72388 * 5 4 2 8 8 N 1.31507 * 119.99620 * 0.27624 * 7 5 4 9 9 Si 1.86795 * 119.99920 * 180.27645 * 7 5 4 10 10 H 1.48501 * 109.47088 * 90.00102 * 9 7 5 11 11 H 1.48501 * 109.47209 * 209.99987 * 9 7 5 12 12 H 1.48503 * 109.47382 * 330.00237 * 9 7 5 13 13 O 1.42901 * 109.47078 * 240.00857 * 2 1 3 14 14 C 1.35618 * 117.00237 * 84.94997 * 13 2 1 15 15 C 1.38683 * 120.15715 * 354.50954 * 14 13 2 16 16 C 1.38046 * 120.12367 * 179.97438 * 15 14 13 17 17 C 1.38721 * 120.44708 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.84571 * 179.97438 * 17 16 15 19 19 C 1.37779 * 120.31012 * 0.02562 * 17 16 15 20 20 C 1.40027 * 119.86881 * 359.67918 * 19 17 16 21 21 C 1.46781 * 120.21997 * 180.29742 * 20 19 17 22 22 O 1.21296 * 119.99754 * 180.27514 * 21 20 19 23 23 H 1.09004 * 109.46609 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47207 * 299.99329 * 1 2 3 25 25 H 1.08997 * 109.47355 * 59.99789 * 1 2 3 26 26 H 1.09006 * 109.47188 * 64.99761 * 4 2 1 27 27 H 1.09003 * 109.47532 * 305.00201 * 4 2 1 28 28 H 0.97007 * 120.00012 * 179.97438 * 8 7 5 29 29 H 1.08001 * 119.93698 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.77470 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.06751 * 179.97438 * 19 17 16 32 32 H 1.07995 * 119.99772 * 0.27180 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3125 6 1 4.0790 -0.0862 0.5391 7 6 4.2300 -1.1884 2.3609 8 7 3.5760 -1.8327 3.3024 9 14 6.0910 -1.0499 2.4435 10 1 6.4633 0.1756 3.1951 11 1 6.6459 -2.2417 3.1341 12 1 6.6434 -0.9734 1.0672 13 8 2.0063 -0.6735 -1.1669 14 6 2.1112 0.0611 -2.3021 15 6 1.6579 1.3715 -2.3284 16 6 1.7656 2.1187 -3.4841 17 6 2.3260 1.5683 -4.6275 18 17 2.4531 2.5219 -6.0725 19 6 2.7812 0.2679 -4.6219 20 6 2.6842 -0.5000 -3.4550 21 6 3.1727 -1.8840 -3.4385 22 8 3.0820 -2.5471 -2.4270 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7517 -1.7716 1.2054 27 1 1.6054 -0.2620 2.1369 28 1 4.0601 -2.2365 4.0398 29 1 1.2199 1.8081 -1.4430 30 1 1.4111 3.1388 -3.4982 31 1 3.2165 -0.1569 -5.5144 32 1 3.6127 -2.3119 -4.3271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709956873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:16 Heat of formation + Delta-G solvation = -80.965805 kcal Electronic energy + Delta-G solvation = -17970.044409 eV Core-core repulsion = 14921.154102 eV Total energy + Delta-G solvation = -3048.890307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53500 -39.53953 -38.77810 -37.15033 -35.46643 -33.54368 -32.51107 -30.56874 -29.40649 -25.86371 -25.33921 -24.24925 -22.04370 -21.59817 -19.19035 -18.56491 -17.87564 -17.41587 -16.61034 -16.30790 -16.01605 -15.88025 -15.29454 -15.03261 -14.79251 -14.39312 -14.09284 -13.83668 -13.51781 -13.45316 -13.27424 -13.10587 -12.66576 -12.47878 -12.46046 -12.10265 -11.92193 -11.65243 -11.38369 -11.06842 -10.62528 -10.55973 -10.17495 -9.10264 -8.23140 -6.31454 -0.35296 0.22201 1.16188 1.33825 1.36717 1.47165 1.53154 2.31444 2.37859 2.68091 3.11676 3.33207 3.70869 3.84862 4.01370 4.06689 4.18070 4.34425 4.40708 4.52054 4.64417 4.77037 4.86020 4.97945 5.09420 5.15747 5.22125 5.30946 5.43392 5.56826 5.73231 6.15162 6.54788 6.70913 6.79027 7.35386 8.88920 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.005232 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.417428 B = 5350.236167 C = 5613.102021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.085 3.915 3 H 0.074 0.926 4 C 0.030 3.970 5 C -0.526 4.526 6 H 0.047 0.953 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.274 1.274 13 O -0.291 6.291 14 C 0.170 3.830 15 C -0.226 4.226 16 C -0.029 4.029 17 C -0.103 4.103 18 Cl -0.059 7.059 19 C -0.006 4.006 20 C -0.245 4.245 21 C 0.374 3.626 22 O -0.490 6.490 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.076 0.924 26 H -0.008 1.008 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.150 0.850 30 H 0.163 0.837 31 H 0.181 0.819 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 9.022 -19.039 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.066 0.934 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.783 3.217 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.199 1.199 13 O -0.202 6.202 14 C 0.121 3.879 15 C -0.244 4.244 16 C -0.047 4.047 17 C -0.129 4.129 18 Cl -0.031 7.031 19 C -0.025 4.025 20 C -0.248 4.248 21 C 0.234 3.766 22 O -0.365 6.365 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.167 0.833 30 H 0.180 0.820 31 H 0.198 0.802 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.807 8.441 -18.400 20.598 hybrid contribution 0.732 0.080 0.551 0.919 sum -3.076 8.521 -17.849 20.017 Atomic orbital electron populations 1.22317 0.93700 1.02742 1.03618 1.22763 0.94321 0.96290 0.83619 0.90848 1.19085 0.95567 0.94866 0.91141 1.21378 0.93221 1.34480 1.07373 0.93446 1.25848 1.03458 0.94809 0.95358 1.70061 1.37505 1.36882 1.12668 0.85546 0.79789 0.78175 0.78169 1.18917 1.20549 1.19873 1.86417 1.78618 1.38454 1.16696 1.20097 0.89895 0.90895 0.86988 1.21470 1.08277 0.93561 1.01121 1.21291 0.93209 1.00598 0.89629 1.20679 1.08783 0.93731 0.89747 1.98362 1.97147 1.71531 1.36027 1.21324 0.93302 0.90987 0.96887 1.20678 1.10699 1.00057 0.93317 1.24575 0.74612 0.85264 0.92100 1.90702 1.45729 1.62305 1.37727 0.92963 0.89622 0.90503 0.98965 0.95376 0.92706 0.83285 0.81982 0.80151 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 9.17 71.98 0.66 -4.84 16 2 C 0.09 3.60 2.17 30.59 0.07 3.66 16 3 H 0.07 2.88 6.31 -2.39 -0.02 2.86 16 4 C 0.03 1.64 4.68 29.85 0.14 1.78 16 5 C -0.53 -31.29 8.88 25.60 0.23 -31.06 16 6 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 7 C 0.00 0.18 5.46 84.66 0.46 0.64 16 8 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 9 Si 0.96 46.46 29.54 68.60 2.03 48.49 16 10 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 13 O -0.29 -12.89 7.62 -68.34 -0.52 -13.41 16 14 C 0.17 5.92 6.62 22.91 0.15 6.07 16 15 C -0.23 -6.20 8.23 22.33 0.18 -6.01 16 16 C -0.03 -0.61 9.81 22.34 0.22 -0.39 16 17 C -0.10 -2.06 6.31 22.28 0.14 -1.92 16 18 Cl -0.06 -1.00 28.94 -2.72 -0.08 -1.08 16 19 C -0.01 -0.13 9.57 22.60 0.22 0.09 16 20 C -0.25 -7.07 5.88 -20.07 -0.12 -7.19 16 21 C 0.37 11.10 11.44 70.06 0.80 11.90 16 22 O -0.49 -21.43 15.98 17.88 0.29 -21.14 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.08 2.08 6.91 -2.39 -0.02 2.06 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.26 15.46 8.31 -92.70 -0.77 14.68 16 29 H 0.15 3.84 5.42 -2.91 -0.02 3.83 16 30 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -75.98 296.35 6.28 -69.70 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.13 Total: 2.47 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.15 Total: -27.27 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.28 Total: -57.76 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.24 Total: -34.55 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -75.98 6.28 -69.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709956873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.266 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds