Wall clock time and date at job start Mon Mar 30 2020 08:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34229 * 116.99848 * 89.99847 * 12 2 1 14 14 O 1.20826 * 120.00265 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99888 * 179.97438 * 13 12 2 16 16 O 1.42897 * 109.46982 * 179.97438 * 15 13 12 17 17 C 1.35951 * 117.00081 * 179.97438 * 16 15 13 18 18 C 1.38707 * 120.02512 * 359.73049 * 17 16 15 19 19 C 1.38153 * 119.96853 * 179.79183 * 18 17 16 20 20 C 1.38457 * 120.02773 * 0.47609 * 19 18 17 21 21 F 1.35096 * 119.97259 * 179.72493 * 20 19 18 22 22 C 1.38462 * 120.06018 * 359.75495 * 20 19 18 23 23 C 1.38145 * 120.02564 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47295 * 300.00299 * 15 13 12 29 29 H 1.08998 * 109.46637 * 60.00115 * 15 13 12 30 30 H 1.08002 * 120.02007 * 359.97438 * 18 17 16 31 31 H 1.07997 * 119.98481 * 180.20866 * 19 18 17 32 32 H 1.08000 * 119.98445 * 179.97438 * 22 20 19 33 33 H 1.08001 * 120.01172 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7193 -0.5768 -3.5493 16 8 2.8536 0.4189 -4.5654 17 6 3.3001 0.0042 -5.7807 18 6 3.6075 -1.3324 -5.9881 19 6 4.0570 -1.7532 -7.2248 20 6 4.2100 -0.8398 -8.2541 21 9 4.6549 -1.2517 -9.4614 22 6 3.9079 0.4955 -8.0469 23 6 3.4540 0.9181 -6.8125 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 3.6884 -1.0398 -3.3633 29 1 2.0105 -1.3370 -3.8774 30 1 3.4928 -2.0443 -5.1841 31 1 4.2933 -2.7944 -7.3876 32 1 4.0281 1.2070 -8.8505 33 1 3.2189 1.9598 -6.6511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733708046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:46 Heat of formation + Delta-G solvation = -161.657718 kcal Electronic energy + Delta-G solvation = -19263.631327 eV Core-core repulsion = 15782.905581 eV Total energy + Delta-G solvation = -3480.725746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.82022 -41.68780 -40.82740 -38.39539 -37.46865 -35.36944 -32.39616 -31.94274 -30.88641 -29.25933 -27.46413 -24.55587 -23.76690 -23.02151 -21.52642 -19.60814 -18.99676 -18.50258 -18.20876 -17.78025 -17.69159 -17.00436 -16.58390 -16.29414 -16.12635 -15.68989 -15.11072 -14.70477 -14.46163 -14.27445 -14.03229 -13.86683 -13.46493 -13.35628 -13.16165 -13.00526 -12.81594 -12.40190 -12.18153 -12.01808 -11.92803 -11.64603 -11.38760 -11.03440 -10.60657 -10.19763 -9.18324 -8.29556 -6.47130 0.14295 0.16887 1.17648 1.22365 1.44927 1.47270 1.56352 2.34317 2.54251 2.61667 3.01664 3.31672 3.58658 3.79560 3.79759 3.97755 4.02392 4.16862 4.31243 4.50045 4.55854 4.76451 4.80365 4.90454 5.10009 5.11018 5.12562 5.19515 5.46845 5.59696 5.65452 5.88176 6.02327 6.20264 6.57778 6.86038 7.24426 8.78033 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.048933 B = 0.003142 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.076385 B = 8908.746923 C = 9233.077953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.008 0.992 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.262 1.262 12 O -0.353 6.353 13 C 0.447 3.553 14 O -0.542 6.542 15 C 0.077 3.923 16 O -0.318 6.318 17 C 0.105 3.895 18 C -0.179 4.179 19 C -0.108 4.108 20 C 0.044 3.956 21 F -0.147 7.147 22 C -0.109 4.109 23 C -0.131 4.131 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.271 0.729 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 -6.346 -18.390 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.186 1.186 12 O -0.270 6.270 13 C 0.291 3.709 14 O -0.432 6.432 15 C 0.002 3.998 16 O -0.232 6.232 17 C 0.060 3.940 18 C -0.198 4.198 19 C -0.127 4.127 20 C 0.024 3.976 21 F -0.126 7.126 22 C -0.128 4.128 23 C -0.150 4.150 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.439 -5.698 -18.175 19.809 hybrid contribution 0.080 0.068 0.724 0.732 sum 5.519 -5.629 -17.451 19.149 Atomic orbital electron populations 1.22011 0.96576 1.00715 1.00914 1.20419 0.92151 0.92161 0.78730 0.97441 1.21287 1.33663 1.14128 0.89687 0.90890 1.25862 0.94668 0.95648 1.02254 1.70014 1.36518 1.23654 1.25376 0.85200 0.78806 0.78640 0.76569 1.19235 1.20468 1.18640 1.86432 1.76267 1.43293 1.21002 1.23804 0.74683 0.85786 0.86667 1.90636 1.49007 1.18624 1.84937 1.22128 1.05803 0.89708 0.82198 1.86090 1.81520 1.36617 1.18964 1.19315 0.96095 0.94017 0.84543 1.21440 1.04317 0.94489 0.99526 1.21211 0.99092 1.01082 0.91315 1.17826 1.04198 0.93822 0.81726 1.91477 1.87377 1.91017 1.42746 1.21142 0.99088 0.94723 0.97821 1.20478 1.03184 1.00507 0.90803 0.90038 0.93074 0.95757 0.91947 0.84554 0.84308 0.81766 0.82021 0.82012 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.30 9.33 71.98 0.67 -6.63 16 2 C 0.22 11.76 2.56 29.85 0.08 11.83 16 3 H 0.01 0.47 7.16 -2.39 -0.02 0.46 16 4 C -0.55 -30.41 8.90 25.60 0.23 -30.19 16 5 H 0.07 3.88 7.81 -2.91 -0.02 3.85 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.15 11.32 21.45 0.24 -51.91 16 8 Si 0.99 41.80 29.54 68.60 2.03 43.83 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 12 O -0.35 -16.07 9.86 -51.40 -0.51 -16.58 16 13 C 0.45 18.02 8.01 71.24 0.57 18.59 16 14 O -0.54 -26.55 15.72 28.40 0.45 -26.11 16 15 C 0.08 1.98 5.33 71.24 0.38 2.36 16 16 O -0.32 -9.10 9.67 -73.92 -0.71 -9.81 16 17 C 0.11 2.35 6.69 22.49 0.15 2.50 16 18 C -0.18 -3.03 9.04 22.36 0.20 -2.82 16 19 C -0.11 -1.70 10.02 22.30 0.22 -1.47 16 20 C 0.04 0.78 7.30 22.38 0.16 0.94 16 21 F -0.15 -2.83 17.27 44.97 0.78 -2.05 16 22 C -0.11 -1.86 10.02 22.30 0.22 -1.63 16 23 C -0.13 -2.64 9.98 22.36 0.22 -2.42 16 24 H 0.08 4.45 6.07 -2.39 -0.01 4.43 16 25 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.14 2.61 7.65 -2.39 -0.02 2.59 16 29 H 0.14 2.56 7.68 -2.39 -0.02 2.55 16 30 H 0.16 1.94 6.30 -2.91 -0.02 1.92 16 31 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -68.91 298.59 6.96 -61.95 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.13 Total: 8.34 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 3.56 Total: -7.65 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.24 Total: -51.91 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.78 Total: -52.50 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -68.91 6.96 -61.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.706 kcal (2) G-P(sol) polarization free energy of solvation -68.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds