Wall clock time and date at job start Mon Mar 30 2020 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46969 * 2 1 4 4 C 1.50692 * 109.47136 * 239.99243 * 2 1 3 5 5 H 1.07995 * 120.00319 * 245.62805 * 4 2 1 6 6 C 1.37879 * 119.99973 * 65.63463 * 4 2 1 7 7 N 1.31517 * 120.00303 * 197.20273 * 6 4 2 8 8 Si 1.86802 * 119.99787 * 17.47224 * 6 4 2 9 9 H 1.48506 * 109.47203 * 179.72993 * 8 6 4 10 10 H 1.48501 * 109.47068 * 299.72536 * 8 6 4 11 11 H 1.48495 * 109.47337 * 59.72715 * 8 6 4 12 12 N 1.46503 * 109.46772 * 119.99385 * 2 1 3 13 13 N 1.40099 * 120.00327 * 270.00075 * 12 2 1 14 14 C 1.29762 * 120.00005 * 180.02562 * 13 12 2 15 15 C 1.47423 * 119.99908 * 180.02562 * 14 13 12 16 16 C 1.40142 * 120.18712 * 180.02562 * 15 14 13 17 17 O 1.35853 * 120.12908 * 359.97421 * 16 15 14 18 18 C 1.38460 * 119.74266 * 180.02562 * 16 15 14 19 19 C 1.38288 * 120.12259 * 359.97438 * 18 16 15 20 20 C 1.38359 * 120.38807 * 0.02562 * 19 18 16 21 21 C 1.38104 * 120.25173 * 359.71637 * 20 19 18 22 22 Cl 1.73597 * 120.06431 * 180.30264 * 21 20 19 23 23 H 1.08996 * 109.47555 * 186.31928 * 1 2 3 24 24 H 1.09005 * 109.47177 * 306.32631 * 1 2 3 25 25 H 1.09006 * 109.46795 * 66.31343 * 1 2 3 26 26 H 0.96991 * 119.99563 * 355.15145 * 7 6 4 27 27 H 0.97000 * 119.99555 * 89.99998 * 12 2 1 28 28 H 1.08008 * 119.99744 * 359.97438 * 14 13 12 29 29 H 0.96700 * 113.99054 * 90.00390 * 17 16 15 30 30 H 1.08004 * 119.93836 * 180.02562 * 18 16 15 31 31 H 1.08004 * 119.80589 * 180.02562 * 19 18 16 32 32 H 1.07993 * 119.87765 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5762 -1.6385 -1.1338 6 6 1.7977 -0.1758 -2.4793 7 7 1.9221 -0.9282 -3.5508 8 14 1.3103 1.6194 -2.6502 9 1 1.1233 1.9471 -4.0865 10 1 0.0406 1.8594 -1.9184 11 1 2.3794 2.4789 -2.0815 12 7 2.0182 -0.6905 1.1963 13 7 2.2517 0.0301 2.3749 14 6 2.6847 -0.5815 3.4343 15 6 2.9298 0.1767 4.6746 16 6 3.3979 -0.4798 5.8209 17 8 3.6274 -1.8185 5.7942 18 6 3.6245 0.2412 6.9810 19 6 3.3903 1.6039 7.0082 20 6 2.9281 2.2572 5.8796 21 6 2.7019 1.5544 4.7124 22 17 2.1295 2.3805 3.2969 23 1 -0.3634 -1.0214 0.1131 24 1 -0.3634 0.6088 0.8280 25 1 -0.3633 0.4129 -0.9412 26 1 2.2466 -1.8385 -3.4690 27 1 2.1799 -1.6466 1.1723 28 1 2.8646 -1.6462 3.4075 29 1 4.5266 -2.0581 5.5312 30 1 3.9856 -0.2614 7.8662 31 1 3.5691 2.1613 7.9158 32 1 2.7476 3.3215 5.9101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755802566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:47 Heat of formation + Delta-G solvation = 23.492022 kcal Electronic energy + Delta-G solvation = -17509.119653 eV Core-core repulsion = 14497.051729 eV Total energy + Delta-G solvation = -3012.067925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.82455 -37.04707 -36.53466 -35.81691 -34.21412 -32.06839 -30.54285 -29.85671 -27.45208 -24.80185 -23.56923 -22.54818 -20.49895 -20.09653 -18.47038 -17.80027 -16.69727 -16.34018 -15.56413 -15.01782 -14.67703 -14.39935 -13.84246 -13.37149 -13.28790 -12.72882 -12.63865 -12.45441 -11.96873 -11.84535 -11.59307 -11.14464 -11.12653 -10.99761 -10.67542 -10.50996 -10.04201 -9.80446 -9.17620 -9.08703 -8.89874 -8.64913 -8.34037 -7.03635 -6.56548 -4.22791 0.86753 1.06433 2.41705 2.83077 3.33892 3.39912 3.52666 3.62690 3.66044 4.12372 4.38904 4.78468 4.85660 4.95961 5.15495 5.20701 5.52920 5.68836 5.80082 6.05197 6.21077 6.26919 6.34348 6.50942 6.58525 6.66200 6.71304 7.04668 7.34859 7.52216 7.83862 7.96648 8.25435 8.78509 9.12655 9.46081 10.80636 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.004958 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.667927 B = 5646.132964 C = 6312.823327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.276 3.724 3 H 0.034 0.966 4 C -0.615 4.615 5 H 0.060 0.940 6 C 0.039 3.961 7 N -0.898 5.898 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.613 5.613 13 N -0.166 5.166 14 C -0.027 4.027 15 C -0.021 4.021 16 C 0.118 3.882 17 O -0.491 6.491 18 C -0.141 4.141 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.018 4.018 22 Cl -0.026 7.026 23 H 0.043 0.957 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.269 0.731 27 H 0.372 0.628 28 H 0.111 0.889 29 H 0.390 0.610 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 4.409 20.203 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.172 3.828 3 H 0.052 0.948 4 C -0.654 4.654 5 H 0.078 0.922 6 C -0.168 4.168 7 N -0.531 5.531 8 Si 0.870 3.130 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.206 1.206 12 N -0.349 5.349 13 N 0.020 4.980 14 C -0.233 4.233 15 C -0.025 4.025 16 C 0.070 3.930 17 O -0.301 6.301 18 C -0.160 4.160 19 C -0.125 4.125 20 C -0.139 4.139 21 C -0.047 4.047 22 Cl 0.003 6.997 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.208 0.792 28 H 0.128 0.872 29 H 0.246 0.754 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.120 6.531 18.511 19.744 hybrid contribution 1.215 -2.519 1.046 2.986 sum 3.335 4.012 19.557 20.241 Atomic orbital electron populations 1.22621 0.99430 1.00192 0.99998 1.18796 0.89694 0.93659 0.80608 0.94818 1.22105 1.41636 1.10675 0.91019 0.92205 1.25688 0.94354 1.05132 0.91589 1.70872 1.41029 1.09958 1.31259 0.84083 0.77476 0.75087 0.76371 1.20793 1.19743 1.20624 1.48962 1.71292 1.07979 1.06651 1.74631 1.03070 1.26576 0.93766 1.23230 1.11028 0.97298 0.91715 1.18654 1.00376 0.90982 0.92504 1.18232 1.00115 0.83082 0.91576 1.84805 1.36100 1.18444 1.90719 1.21314 1.02399 0.94258 0.98023 1.20926 0.99612 0.93912 0.98039 1.21022 1.00906 1.00504 0.91433 1.21022 1.01635 0.91970 0.90091 1.98430 1.86372 1.77118 1.37761 0.93781 0.95399 0.91999 0.92093 0.79161 0.87216 0.75358 0.85019 0.85030 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.19 37.16 0.34 -3.38 16 2 C 0.28 6.73 2.82 -69.09 -0.19 6.54 16 3 H 0.03 0.86 6.80 -51.93 -0.35 0.51 16 4 C -0.62 -16.99 9.01 -34.44 -0.31 -17.30 16 5 H 0.06 1.76 8.01 -52.49 -0.42 1.34 16 6 C 0.04 1.10 5.29 -17.82 -0.09 1.01 16 7 N -0.90 -26.95 13.70 55.43 0.76 -26.19 16 8 Si 1.04 24.88 26.29 -169.99 -4.47 20.41 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.27 -6.00 5.76 56.52 0.33 -5.67 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 N -0.61 -13.41 6.10 -5.88 -0.04 -13.44 16 13 N -0.17 -3.31 8.06 32.15 0.26 -3.05 16 14 C -0.03 -0.45 10.49 -14.69 -0.15 -0.61 16 15 C -0.02 -0.32 5.88 -104.90 -0.62 -0.94 16 16 C 0.12 1.44 6.71 -38.79 -0.26 1.18 16 17 O -0.49 -5.37 12.69 -19.28 -0.24 -5.61 16 18 C -0.14 -1.41 9.97 -39.48 -0.39 -1.80 16 19 C -0.11 -0.99 10.03 -39.52 -0.40 -1.39 16 20 C -0.12 -1.35 9.81 -39.59 -0.39 -1.74 16 21 C -0.02 -0.25 6.35 -39.08 -0.25 -0.50 16 22 Cl -0.03 -0.44 25.73 -51.86 -1.33 -1.77 16 23 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 1.43 4.88 -51.93 -0.25 1.18 16 26 H 0.27 8.02 8.73 -40.82 -0.36 7.67 16 27 H 0.37 7.74 8.56 -182.60 -1.56 6.18 16 28 H 0.11 1.74 7.60 -52.48 -0.40 1.34 16 29 H 0.39 2.49 9.06 45.56 0.41 2.91 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 292.21 15.07 4.40 4.40 Total: -1.00 -31.33 292.21 -7.30 -38.63 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.92 Total: 5.56 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.72 Total: -18.94 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.98 Total: -42.69 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.24 Total: -5.61 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.47 Total: 20.41 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.33 Total: -1.77 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.33 -7.30 -38.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.121 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds