Wall clock time and date at job start Mon Mar 30 2020 07:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46969 * 2 1 4 4 C 1.50692 * 109.47136 * 239.99243 * 2 1 3 5 5 H 1.07995 * 120.00319 * 245.62805 * 4 2 1 6 6 C 1.37879 * 119.99973 * 65.63463 * 4 2 1 7 7 N 1.31517 * 120.00303 * 197.20273 * 6 4 2 8 8 Si 1.86802 * 119.99787 * 17.47224 * 6 4 2 9 9 H 1.48506 * 109.47203 * 179.72993 * 8 6 4 10 10 H 1.48501 * 109.47068 * 299.72536 * 8 6 4 11 11 H 1.48495 * 109.47337 * 59.72715 * 8 6 4 12 12 N 1.46503 * 109.46772 * 119.99385 * 2 1 3 13 13 N 1.40099 * 120.00327 * 270.00075 * 12 2 1 14 14 C 1.29762 * 120.00005 * 180.02562 * 13 12 2 15 15 C 1.47423 * 119.99908 * 180.02562 * 14 13 12 16 16 C 1.40142 * 120.18712 * 180.02562 * 15 14 13 17 17 O 1.35853 * 120.12908 * 359.97421 * 16 15 14 18 18 C 1.38460 * 119.74266 * 180.02562 * 16 15 14 19 19 C 1.38288 * 120.12259 * 359.97438 * 18 16 15 20 20 C 1.38359 * 120.38807 * 0.02562 * 19 18 16 21 21 C 1.38104 * 120.25173 * 359.71637 * 20 19 18 22 22 Cl 1.73597 * 120.06431 * 180.30264 * 21 20 19 23 23 H 1.08996 * 109.47555 * 186.31928 * 1 2 3 24 24 H 1.09005 * 109.47177 * 306.32631 * 1 2 3 25 25 H 1.09006 * 109.46795 * 66.31343 * 1 2 3 26 26 H 0.96991 * 119.99563 * 355.15145 * 7 6 4 27 27 H 0.97000 * 119.99555 * 89.99998 * 12 2 1 28 28 H 1.08008 * 119.99744 * 359.97438 * 14 13 12 29 29 H 0.96700 * 113.99054 * 90.00390 * 17 16 15 30 30 H 1.08004 * 119.93836 * 180.02562 * 18 16 15 31 31 H 1.08004 * 119.80589 * 180.02562 * 19 18 16 32 32 H 1.07993 * 119.87765 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5762 -1.6385 -1.1338 6 6 1.7977 -0.1758 -2.4793 7 7 1.9221 -0.9282 -3.5508 8 14 1.3103 1.6194 -2.6502 9 1 1.1233 1.9471 -4.0865 10 1 0.0406 1.8594 -1.9184 11 1 2.3794 2.4789 -2.0815 12 7 2.0182 -0.6905 1.1963 13 7 2.2517 0.0301 2.3749 14 6 2.6847 -0.5815 3.4343 15 6 2.9298 0.1767 4.6746 16 6 3.3979 -0.4798 5.8209 17 8 3.6274 -1.8185 5.7942 18 6 3.6245 0.2412 6.9810 19 6 3.3903 1.6039 7.0082 20 6 2.9281 2.2572 5.8796 21 6 2.7019 1.5544 4.7124 22 17 2.1295 2.3805 3.2969 23 1 -0.3634 -1.0214 0.1131 24 1 -0.3634 0.6088 0.8280 25 1 -0.3633 0.4129 -0.9412 26 1 2.2466 -1.8385 -3.4690 27 1 2.1799 -1.6466 1.1723 28 1 2.8646 -1.6462 3.4075 29 1 4.5266 -2.0581 5.5312 30 1 3.9856 -0.2614 7.8662 31 1 3.5691 2.1613 7.9158 32 1 2.7476 3.3215 5.9101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755802566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:44 Heat of formation + Delta-G solvation = 0.917473 kcal Electronic energy + Delta-G solvation = -17510.098559 eV Core-core repulsion = 14497.051729 eV Total energy + Delta-G solvation = -3013.046830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75926 -38.22659 -37.87651 -36.86023 -35.96833 -33.88529 -31.90466 -30.76797 -28.93322 -26.83033 -24.74631 -23.49309 -22.09838 -21.57998 -19.80799 -19.34630 -18.07265 -17.37139 -16.65615 -16.39609 -15.99928 -15.41330 -15.31590 -14.83507 -14.70189 -14.44479 -14.20170 -13.80888 -13.47360 -13.27201 -12.77029 -12.70626 -12.43434 -12.23882 -12.15930 -11.91165 -11.66689 -11.56390 -11.15457 -10.52962 -10.41131 -10.13047 -9.57135 -8.91079 -8.43919 -6.47615 -0.14255 0.17827 1.34288 1.43472 1.49864 1.64362 1.68889 2.10759 2.40953 2.68393 2.98672 3.27139 3.72554 3.96160 4.07355 4.36931 4.44773 4.57143 4.63220 4.75450 4.78368 4.84560 4.99027 5.14137 5.31168 5.37374 5.41682 5.52391 5.74230 5.89722 5.91067 6.19441 6.64718 6.81284 7.29711 7.62272 8.55225 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.004958 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.667927 B = 5646.132964 C = 6312.823327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.286 3.714 3 H 0.024 0.976 4 C -0.615 4.615 5 H 0.027 0.973 6 C -0.007 4.007 7 N -0.928 5.928 8 Si 1.077 2.923 9 H -0.281 1.281 10 H -0.242 1.242 11 H -0.269 1.269 12 N -0.639 5.639 13 N -0.202 5.202 14 C 0.007 3.993 15 C -0.066 4.066 16 C 0.127 3.873 17 O -0.500 6.500 18 C -0.137 4.137 19 C -0.080 4.080 20 C -0.125 4.125 21 C -0.030 4.030 22 Cl -0.056 7.056 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.255 0.745 27 H 0.369 0.631 28 H 0.118 0.882 29 H 0.411 0.589 30 H 0.165 0.835 31 H 0.174 0.826 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 5.822 24.048 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.181 3.819 3 H 0.042 0.958 4 C -0.654 4.654 5 H 0.045 0.955 6 C -0.207 4.207 7 N -0.563 5.563 8 Si 0.898 3.102 9 H -0.207 1.207 10 H -0.166 1.166 11 H -0.195 1.195 12 N -0.374 5.374 13 N -0.013 5.013 14 C -0.201 4.201 15 C -0.070 4.070 16 C 0.079 3.921 17 O -0.314 6.314 18 C -0.155 4.155 19 C -0.099 4.099 20 C -0.144 4.144 21 C -0.059 4.059 22 Cl -0.026 7.026 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.205 0.795 28 H 0.135 0.865 29 H 0.270 0.730 30 H 0.182 0.818 31 H 0.192 0.808 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.466 7.930 22.383 23.874 hybrid contribution 1.294 -3.058 0.265 3.331 sum 3.760 4.873 22.647 23.469 Atomic orbital electron populations 1.22488 0.98279 1.00305 1.00292 1.18419 0.90408 0.92591 0.80504 0.95793 1.22295 1.40636 1.09504 0.92978 0.95464 1.27007 0.94009 1.08302 0.91374 1.70989 1.43411 1.09636 1.32269 0.83667 0.78974 0.70761 0.76817 1.20676 1.16626 1.19461 1.48560 1.74064 1.07621 1.07192 1.74711 1.06455 1.26310 0.93776 1.23792 1.06545 0.98039 0.91765 1.18788 1.04132 0.91495 0.92562 1.18405 0.98852 0.83496 0.91343 1.84751 1.38028 1.17853 1.90721 1.21710 1.01231 0.94558 0.98006 1.21460 0.96108 0.93865 0.98484 1.21336 1.00674 1.01581 0.90814 1.21275 1.02419 0.92022 0.90178 1.98418 1.86898 1.77585 1.39749 0.94065 0.93879 0.92416 0.93577 0.79455 0.86480 0.72954 0.81780 0.80832 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.04 9.19 71.98 0.66 -6.38 16 2 C 0.29 14.19 2.82 44.24 0.12 14.32 16 3 H 0.02 1.24 6.80 -2.39 -0.02 1.23 16 4 C -0.62 -35.22 9.01 25.60 0.23 -34.99 16 5 H 0.03 1.69 8.01 -2.91 -0.02 1.66 16 6 C -0.01 -0.40 5.29 84.65 0.45 0.05 16 7 N -0.93 -57.58 13.70 21.45 0.29 -57.29 16 8 Si 1.08 50.26 26.29 68.60 1.80 52.06 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.24 -10.11 5.76 99.48 0.57 -9.53 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.64 -28.70 6.10 -172.53 -1.05 -29.76 16 13 N -0.20 -8.13 8.06 -52.20 -0.42 -8.55 16 14 C 0.01 0.25 10.49 87.42 0.92 1.17 16 15 C -0.07 -1.86 5.88 -20.04 -0.12 -1.98 16 16 C 0.13 2.69 6.71 22.79 0.15 2.85 16 17 O -0.50 -9.44 12.69 -91.89 -1.17 -10.61 16 18 C -0.14 -2.03 9.97 22.33 0.22 -1.81 16 19 C -0.08 -1.07 10.03 22.31 0.22 -0.85 16 20 C -0.13 -2.39 9.81 22.27 0.22 -2.17 16 21 C -0.03 -0.81 6.35 22.59 0.14 -0.66 16 22 Cl -0.06 -1.82 25.73 -2.72 -0.07 -1.89 16 23 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.06 2.62 4.88 -2.38 -0.01 2.61 16 26 H 0.26 16.00 8.73 -92.71 -0.81 15.19 16 27 H 0.37 16.08 8.56 -213.32 -1.83 14.25 16 28 H 0.12 3.67 7.60 -2.91 -0.02 3.65 16 29 H 0.41 4.04 9.06 -74.06 -0.67 3.37 16 30 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -70.57 292.21 1.11 -69.46 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -1.50 Total: 17.04 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 3.23 Total: -30.46 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -1.18 Total: -95.60 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.17 Total: -10.61 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 1.80 Total: 52.06 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -70.57 1.11 -69.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.377 kcal (2) G-P(sol) polarization free energy of solvation -70.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds