Wall clock time and date at job start Mon Mar 30 2020 08:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35961 * 117.00450 * 2 1 4 4 C 1.38302 * 119.98679 * 0.02562 * 3 2 1 5 5 C 1.39661 * 119.81468 * 180.02562 * 4 3 2 6 6 C 1.47615 * 120.10224 * 179.97438 * 5 4 3 7 7 O 1.21482 * 119.99966 * 359.97438 * 6 5 4 8 8 O 1.34730 * 119.99986 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99814 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46971 * 30.00444 * 9 8 6 11 11 C 1.52996 * 109.47175 * 270.00257 * 9 8 6 12 12 C 1.50698 * 109.46697 * 149.99828 * 9 8 6 13 13 H 1.08003 * 120.00248 * 35.00756 * 12 9 8 14 14 C 1.37879 * 120.00061 * 214.99746 * 12 9 8 15 15 N 1.31514 * 120.00065 * 184.92370 * 14 12 9 16 16 Si 1.86799 * 120.00086 * 4.91820 * 14 12 9 17 17 H 1.48496 * 109.46932 * 84.83083 * 16 14 12 18 18 H 1.48491 * 109.47212 * 204.83377 * 16 14 12 19 19 H 1.48507 * 109.46996 * 324.83552 * 16 14 12 20 20 C 1.39699 * 119.79840 * 0.25022 * 5 4 3 21 21 C 1.37878 * 119.97172 * 359.47027 * 20 5 4 22 22 C 1.38536 * 120.18623 * 0.53224 * 21 20 5 23 23 F 1.35100 * 119.90058 * 179.72087 * 22 21 20 24 24 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46745 * 299.99538 * 1 2 3 26 26 H 1.08998 * 109.47458 * 59.99533 * 1 2 3 27 27 H 1.08006 * 120.09417 * 0.02562 * 4 3 2 28 28 H 1.08992 * 109.47218 * 295.03411 * 11 9 8 29 29 H 1.09005 * 109.46733 * 175.03555 * 11 9 8 30 30 H 1.09000 * 109.47120 * 55.03506 * 11 9 8 31 31 H 0.96997 * 119.99915 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.01305 * 179.75051 * 20 5 4 33 33 H 1.07996 * 119.90306 * 180.28026 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2929 2.3712 0.0005 5 6 1.9308 3.6136 0.0000 6 6 1.1329 4.8555 0.0000 7 8 -0.0806 4.7978 0.0000 8 8 1.7504 6.0529 0.0000 9 6 0.9026 7.2318 -0.0006 10 1 -0.0322 7.0072 0.5130 11 6 0.6054 7.6455 -1.4433 12 6 1.6080 8.3581 0.7099 13 1 2.6800 8.4610 0.6279 14 6 0.8849 9.2573 1.4645 15 7 1.4856 10.2951 2.0049 16 14 -0.9479 9.0019 1.7192 17 1 -1.1649 8.0798 2.8628 18 1 -1.5944 10.3074 2.0065 19 1 -1.5413 8.4152 0.4908 20 6 3.3263 3.6775 -0.0064 21 6 4.0691 2.5159 -0.0011 22 6 3.4355 1.2839 -0.0005 23 9 4.1689 0.1493 -0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2143 2.3162 0.0014 28 1 1.5301 7.9545 -1.9305 29 1 -0.1012 8.4755 -1.4449 30 1 0.1753 6.8012 -1.9821 31 1 0.9768 10.9279 2.5355 32 1 3.8232 4.6364 -0.0109 33 1 5.1479 2.5666 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763515224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:22 Heat of formation + Delta-G solvation = -145.152504 kcal Electronic energy + Delta-G solvation = -19920.053351 eV Core-core repulsion = 16440.043325 eV Total energy + Delta-G solvation = -3480.010026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.98399 -40.42699 -39.42180 -37.42623 -35.88189 -33.15181 -31.27392 -30.69321 -30.21019 -27.63513 -25.47834 -24.31821 -22.65768 -21.60811 -20.00331 -18.66053 -17.65265 -17.14351 -16.93426 -16.37357 -16.19467 -15.89812 -15.24832 -15.20237 -14.66812 -14.48817 -14.36777 -13.35195 -13.01140 -12.84473 -12.72119 -12.47016 -12.41733 -11.88814 -11.84007 -11.46179 -11.28530 -11.14252 -11.04108 -10.76854 -10.17120 -9.86931 -9.58628 -9.20563 -9.15240 -8.77742 -8.42734 -6.33142 -4.37625 0.52058 1.07065 2.73176 2.87428 3.15227 3.25095 3.30009 3.33618 3.66929 3.98586 4.21190 4.53271 4.73813 4.90919 4.95407 4.99380 5.01059 5.18465 5.26412 5.31043 5.69130 5.78833 6.01508 6.10856 6.17380 6.36268 6.37460 6.45577 6.61915 6.99873 7.08305 7.24319 7.43238 8.13948 8.50527 8.76534 9.25513 10.78000 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.004640 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.607477 B = 6033.534232 C = 6535.821476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.080 3.920 4 C -0.125 4.125 5 C -0.086 4.086 6 C 0.496 3.504 7 O -0.520 6.520 8 O -0.339 6.339 9 C 0.182 3.818 10 H 0.048 0.952 11 C -0.153 4.153 12 C -0.519 4.519 13 H 0.087 0.913 14 C 0.084 3.916 15 N -0.880 5.880 16 Si 0.869 3.131 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.260 1.260 20 C -0.066 4.066 21 C -0.129 4.129 22 C 0.094 3.906 23 F -0.130 7.130 24 H 0.103 0.897 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.152 0.848 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.271 0.729 32 H 0.157 0.843 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -17.313 -4.449 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.034 3.966 4 C -0.144 4.144 5 C -0.087 4.087 6 C 0.340 3.660 7 O -0.412 6.412 8 O -0.255 6.255 9 C 0.129 3.871 10 H 0.066 0.934 11 C -0.211 4.211 12 C -0.556 4.556 13 H 0.105 0.895 14 C -0.121 4.121 15 N -0.516 5.516 16 Si 0.695 3.305 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.185 1.185 20 C -0.085 4.085 21 C -0.148 4.148 22 C 0.074 3.926 23 F -0.108 7.108 24 H 0.122 0.878 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.169 0.831 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.418 -17.317 -4.333 17.856 hybrid contribution -1.242 -0.042 0.261 1.269 sum -0.823 -17.360 -4.072 17.850 Atomic orbital electron populations 1.23168 0.77621 1.04289 1.02075 1.86124 1.21960 1.25219 1.89029 1.18737 0.90673 0.85525 1.01623 1.21239 1.01274 0.89851 1.02012 1.19257 0.93664 0.91243 1.04546 1.20982 0.86338 0.85365 0.73266 1.90755 1.15191 1.88414 1.46854 1.86732 1.43260 1.14184 1.81302 1.21072 0.91249 0.79956 0.94805 0.93421 1.22243 1.01348 0.99946 0.97558 1.20781 0.97138 1.07043 1.30678 0.89516 1.24905 0.98555 0.94798 0.93878 1.69846 1.36772 1.12421 1.32553 0.86969 0.85480 0.78104 0.79977 1.19544 1.20631 1.18489 1.21420 0.92293 0.99356 0.95398 1.21028 1.01501 0.89654 1.02585 1.17238 0.85906 0.83016 1.06405 1.91506 1.76588 1.48827 1.93901 0.87831 0.92099 0.92148 0.83077 0.92250 0.91866 0.95106 0.91890 0.82553 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.78 10.36 -19.62 -0.20 -3.99 16 3 C 0.08 1.06 6.69 -39.24 -0.26 0.79 16 4 C -0.12 -1.74 8.58 -39.03 -0.33 -2.08 16 5 C -0.09 -1.35 5.87 -104.99 -0.62 -1.97 16 6 C 0.50 9.94 7.87 34.56 0.27 10.21 16 7 O -0.52 -11.45 15.60 -19.25 -0.30 -11.75 16 8 O -0.34 -7.54 9.11 -40.57 -0.37 -7.91 16 9 C 0.18 4.45 2.23 -27.89 -0.06 4.39 16 10 H 0.05 1.22 4.31 -51.93 -0.22 1.00 16 11 C -0.15 -3.32 9.53 37.16 0.35 -2.96 16 12 C -0.52 -14.36 9.25 -34.44 -0.32 -14.68 16 13 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 14 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 15 N -0.88 -25.68 13.96 55.43 0.77 -24.90 16 16 Si 0.87 21.03 26.99 -169.99 -4.59 16.44 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.26 -6.14 6.82 56.52 0.39 -5.75 16 20 C -0.07 -0.89 9.61 -39.17 -0.38 -1.27 16 21 C -0.13 -1.48 10.00 -39.60 -0.40 -1.88 16 22 C 0.09 1.21 7.32 -39.15 -0.29 0.92 16 23 F -0.13 -1.69 17.10 2.25 0.04 -1.66 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 27 H 0.15 1.99 5.88 -52.48 -0.31 1.68 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.16 2.04 7.60 -52.49 -0.40 1.64 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -31.10 296.46 -4.73 -35.83 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.41 Total: -1.43 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.13 Total: -5.10 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.77 Total: -24.90 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.87 Total: -23.65 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.59 Total: 16.44 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.10 -4.73 -35.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763515224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.323 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds