Wall clock time and date at job start Mon Mar 30 2020 08:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35961 * 117.00450 * 2 1 4 4 C 1.38302 * 119.98679 * 0.02562 * 3 2 1 5 5 C 1.39661 * 119.81468 * 180.02562 * 4 3 2 6 6 C 1.47615 * 120.10224 * 179.97438 * 5 4 3 7 7 O 1.21482 * 119.99966 * 359.97438 * 6 5 4 8 8 O 1.34730 * 119.99986 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99814 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46971 * 30.00444 * 9 8 6 11 11 C 1.52996 * 109.47175 * 270.00257 * 9 8 6 12 12 C 1.50698 * 109.46697 * 149.99828 * 9 8 6 13 13 H 1.08003 * 120.00248 * 35.00756 * 12 9 8 14 14 C 1.37879 * 120.00061 * 214.99746 * 12 9 8 15 15 N 1.31514 * 120.00065 * 184.92370 * 14 12 9 16 16 Si 1.86799 * 120.00086 * 4.91820 * 14 12 9 17 17 H 1.48496 * 109.46932 * 84.83083 * 16 14 12 18 18 H 1.48491 * 109.47212 * 204.83377 * 16 14 12 19 19 H 1.48507 * 109.46996 * 324.83552 * 16 14 12 20 20 C 1.39699 * 119.79840 * 0.25022 * 5 4 3 21 21 C 1.37878 * 119.97172 * 359.47027 * 20 5 4 22 22 C 1.38536 * 120.18623 * 0.53224 * 21 20 5 23 23 F 1.35100 * 119.90058 * 179.72087 * 22 21 20 24 24 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46745 * 299.99538 * 1 2 3 26 26 H 1.08998 * 109.47458 * 59.99533 * 1 2 3 27 27 H 1.08006 * 120.09417 * 0.02562 * 4 3 2 28 28 H 1.08992 * 109.47218 * 295.03411 * 11 9 8 29 29 H 1.09005 * 109.46733 * 175.03555 * 11 9 8 30 30 H 1.09000 * 109.47120 * 55.03506 * 11 9 8 31 31 H 0.96997 * 119.99915 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.01305 * 179.75051 * 20 5 4 33 33 H 1.07996 * 119.90306 * 180.28026 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2929 2.3712 0.0005 5 6 1.9308 3.6136 0.0000 6 6 1.1329 4.8555 0.0000 7 8 -0.0806 4.7978 0.0000 8 8 1.7504 6.0529 0.0000 9 6 0.9026 7.2318 -0.0006 10 1 -0.0322 7.0072 0.5130 11 6 0.6054 7.6455 -1.4433 12 6 1.6080 8.3581 0.7099 13 1 2.6800 8.4610 0.6279 14 6 0.8849 9.2573 1.4645 15 7 1.4856 10.2951 2.0049 16 14 -0.9479 9.0019 1.7192 17 1 -1.1649 8.0798 2.8628 18 1 -1.5944 10.3074 2.0065 19 1 -1.5413 8.4152 0.4908 20 6 3.3263 3.6775 -0.0064 21 6 4.0691 2.5159 -0.0011 22 6 3.4355 1.2839 -0.0005 23 9 4.1689 0.1493 -0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2143 2.3162 0.0014 28 1 1.5301 7.9545 -1.9305 29 1 -0.1012 8.4755 -1.4449 30 1 0.1753 6.8012 -1.9821 31 1 0.9768 10.9279 2.5355 32 1 3.8232 4.6364 -0.0109 33 1 5.1479 2.5666 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763515224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:22 Heat of formation + Delta-G solvation = -163.751745 kcal Electronic energy + Delta-G solvation = -19920.859875 eV Core-core repulsion = 16440.043325 eV Total energy + Delta-G solvation = -3480.816550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00861 -41.70782 -40.74188 -38.50971 -37.57696 -35.18542 -32.84143 -31.98977 -31.40184 -28.45014 -27.46864 -25.63731 -23.67385 -23.13095 -21.62785 -20.01232 -19.09584 -18.71304 -18.14802 -17.62552 -17.32982 -17.31488 -16.83206 -16.25228 -16.15517 -15.61547 -15.36044 -14.97045 -14.62299 -14.48610 -14.02863 -13.88463 -13.76715 -13.31777 -13.06541 -12.92868 -12.70093 -12.61501 -12.39574 -12.21495 -11.98741 -11.62959 -11.43944 -11.19994 -10.88177 -10.19826 -9.45475 -8.46984 -6.56807 -0.64257 0.06155 1.25178 1.29794 1.37078 1.39359 1.74779 2.06103 2.19714 2.46043 2.89353 2.96666 3.55014 3.62997 3.78991 3.95112 4.20290 4.29234 4.31692 4.37018 4.55073 4.57743 4.63005 4.68146 4.72076 4.88388 4.97463 5.11472 5.31103 5.37364 5.40979 5.56251 6.07127 6.12309 6.52373 6.79588 7.10705 8.68088 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.004640 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.607477 B = 6033.534232 C = 6535.821476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.082 3.918 4 C -0.123 4.123 5 C -0.107 4.107 6 C 0.495 3.505 7 O -0.544 6.544 8 O -0.348 6.348 9 C 0.182 3.818 10 H 0.038 0.962 11 C -0.148 4.148 12 C -0.530 4.530 13 H 0.052 0.948 14 C 0.037 3.963 15 N -0.921 5.921 16 Si 0.925 3.075 17 H -0.270 1.270 18 H -0.267 1.267 19 H -0.249 1.249 20 C -0.065 4.065 21 C -0.111 4.111 22 C 0.094 3.906 23 F -0.129 7.129 24 H 0.131 0.869 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.276 0.724 32 H 0.158 0.842 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -19.143 -4.934 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.035 3.965 4 C -0.141 4.141 5 C -0.108 4.108 6 C 0.342 3.658 7 O -0.437 6.437 8 O -0.264 6.264 9 C 0.129 3.871 10 H 0.056 0.944 11 C -0.206 4.206 12 C -0.567 4.567 13 H 0.070 0.930 14 C -0.164 4.164 15 N -0.559 5.559 16 Si 0.748 3.252 17 H -0.195 1.195 18 H -0.192 1.192 19 H -0.173 1.173 20 C -0.083 4.083 21 C -0.129 4.129 22 C 0.074 3.926 23 F -0.107 7.107 24 H 0.149 0.851 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.176 0.824 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.060 -19.167 -4.829 19.766 hybrid contribution -0.995 0.372 0.398 1.134 sum -1.055 -18.795 -4.431 19.339 Atomic orbital electron populations 1.23470 0.75753 1.06293 1.02473 1.86128 1.23909 1.24607 1.88763 1.18785 0.90966 0.85623 1.01110 1.21207 1.01597 0.89398 1.01947 1.19073 0.94300 0.89726 1.07709 1.21608 0.86515 0.85557 0.72144 1.90728 1.16270 1.88586 1.48124 1.86674 1.42988 1.14712 1.81987 1.20892 0.90369 0.79883 0.95961 0.94389 1.22154 1.01883 1.00666 0.95858 1.20905 0.95802 1.08683 1.31328 0.92956 1.25625 1.02906 0.94325 0.93545 1.69949 1.38729 1.13472 1.33754 0.86070 0.80329 0.78603 0.80190 1.19510 1.19176 1.17318 1.21468 0.91409 1.00291 0.95154 1.21268 1.02955 0.88222 1.00501 1.17443 0.85941 0.83391 1.05786 1.91514 1.76519 1.48907 1.93805 0.85125 0.91832 0.91611 0.82672 0.91691 0.91562 0.93379 0.91424 0.82409 0.79765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -7.15 10.36 -93.11 -0.96 -8.11 16 3 C 0.08 1.99 6.69 22.49 0.15 2.14 16 4 C -0.12 -3.26 8.58 22.63 0.19 -3.06 16 5 C -0.11 -3.27 5.87 -20.11 -0.12 -3.39 16 6 C 0.50 19.67 7.87 70.30 0.55 20.22 16 7 O -0.54 -23.68 15.60 19.89 0.31 -23.37 16 8 O -0.35 -15.50 9.11 -56.40 -0.51 -16.02 16 9 C 0.18 8.91 2.23 29.85 0.07 8.98 16 10 H 0.04 1.93 4.31 -2.39 -0.01 1.92 16 11 C -0.15 -6.26 9.53 71.98 0.69 -5.58 16 12 C -0.53 -29.90 9.25 25.60 0.24 -29.66 16 13 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 14 C 0.04 2.10 5.47 84.66 0.46 2.56 16 15 N -0.92 -54.71 13.96 21.45 0.30 -54.41 16 16 Si 0.93 43.10 26.99 68.60 1.85 44.95 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.25 -11.09 6.82 99.48 0.68 -10.41 16 20 C -0.06 -1.65 9.61 22.54 0.22 -1.43 16 21 C -0.11 -2.25 10.00 22.26 0.22 -2.03 16 22 C 0.09 2.18 7.32 22.55 0.16 2.34 16 23 F -0.13 -3.03 17.10 44.97 0.77 -2.26 16 24 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 26 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 27 H 0.16 3.92 5.88 -2.91 -0.02 3.90 16 28 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.28 15.17 8.31 -92.71 -0.77 14.39 16 32 H 0.16 3.95 7.60 -2.91 -0.02 3.93 16 33 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -66.94 296.46 6.81 -60.13 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.11 Total: 6.68 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 3.95 Total: -7.59 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.30 Total: -54.41 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.17 Total: -47.50 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.77 Total: -2.26 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.85 Total: 44.95 kcal Total: -66.94 6.81 -60.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763515224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.620 kcal (2) G-P(sol) polarization free energy of solvation -66.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds