Wall clock time and date at job start Mon Mar 30 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 N 1.40105 * 119.99660 * 89.99925 * 12 2 1 14 14 C 1.29758 * 119.99610 * 180.02562 * 13 12 2 15 15 C 1.47434 * 119.99732 * 180.02562 * 14 13 12 16 16 C 1.39642 * 120.17319 * 179.72082 * 15 14 13 17 17 C 1.38040 * 119.88029 * 179.78291 * 16 15 14 18 18 Cl 1.73595 * 119.87818 * 180.22770 * 17 16 15 19 19 C 1.38533 * 120.24147 * 0.49110 * 17 16 15 20 20 C 1.38234 * 120.35736 * 359.74242 * 19 17 16 21 21 C 1.38475 * 120.11635 * 0.02562 * 20 19 17 22 22 O 1.35861 * 120.12746 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00160 * 270.00687 * 12 2 1 28 28 H 1.07998 * 120.00177 * 359.97438 * 14 13 12 29 29 H 1.07993 * 120.06225 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.81444 * 179.71463 * 19 17 16 31 31 H 1.08006 * 119.93930 * 180.02562 * 20 19 17 32 32 H 0.96705 * 114.00028 * 270.02857 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.6840 -0.5819 -3.4343 15 6 2.9303 0.1765 -4.6744 16 6 3.4009 -0.4772 -5.8151 17 6 3.6251 0.2379 -6.9743 18 17 4.2045 -0.5758 -8.3941 19 6 3.3947 1.6036 -7.0072 20 6 2.9335 2.2615 -5.8824 21 6 2.6990 1.5579 -4.7131 22 8 2.2462 2.2044 -3.6073 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7081 1.1610 3.4844 27 1 2.1800 -1.6468 -1.1721 28 1 2.8641 -1.6464 -3.4075 29 1 3.5853 -1.5410 -5.7917 30 1 3.5768 2.1571 -7.9165 31 1 2.7557 3.3263 -5.9157 32 1 2.9480 2.5386 -3.0321 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771883351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:15 Heat of formation + Delta-G solvation = -1.187619 kcal Electronic energy + Delta-G solvation = -17202.636997 eV Core-core repulsion = 14189.498883 eV Total energy + Delta-G solvation = -3013.138114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73832 -38.12715 -37.86236 -36.84124 -35.85430 -33.58546 -31.94077 -30.51500 -28.66750 -27.29141 -24.64664 -23.59248 -22.30427 -21.54641 -19.27989 -18.69168 -17.77626 -17.48981 -16.88233 -16.27130 -16.09674 -15.57802 -15.09533 -14.49993 -14.48397 -14.29073 -14.08227 -13.45241 -13.31448 -13.11744 -12.91561 -12.76953 -12.56569 -12.27818 -12.11905 -11.96160 -11.91599 -11.61213 -11.10334 -10.70000 -10.59529 -10.16500 -9.51554 -8.42002 -8.17111 -6.34742 -0.11458 0.17270 1.14810 1.42400 1.43728 1.55218 1.66789 2.17524 2.47241 2.69018 3.11402 3.38768 3.76047 3.87085 4.13275 4.35742 4.56330 4.61225 4.75553 4.93062 4.99353 5.00998 5.13634 5.19131 5.32611 5.42954 5.54517 5.67856 5.78895 5.87684 6.17690 6.40369 6.84625 6.90905 7.36940 7.76527 8.87378 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.040379 B = 0.003454 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.256600 B = 8104.371534 C = 8499.060510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.310 3.690 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.639 5.639 13 N -0.205 5.205 14 C 0.006 3.994 15 C -0.052 4.052 16 C -0.082 4.082 17 C -0.050 4.050 18 Cl -0.064 7.064 19 C -0.089 4.089 20 C -0.134 4.134 21 C 0.116 3.884 22 O -0.492 6.492 23 H 0.028 0.972 24 H 0.015 0.985 25 H 0.069 0.931 26 H 0.267 0.733 27 H 0.372 0.628 28 H 0.121 0.879 29 H 0.152 0.848 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.537 -0.150 -18.831 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.206 3.794 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.376 5.376 13 N -0.016 5.016 14 C -0.203 4.203 15 C -0.055 4.055 16 C -0.103 4.103 17 C -0.077 4.077 18 Cl -0.035 7.035 19 C -0.109 4.109 20 C -0.152 4.152 21 C 0.068 3.932 22 O -0.304 6.304 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.209 0.791 28 H 0.139 0.861 29 H 0.170 0.830 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.604 0.738 -18.439 19.286 hybrid contribution 0.755 -1.481 0.998 1.939 sum 6.359 -0.743 -17.442 18.580 Atomic orbital electron populations 1.22026 0.99101 0.98886 0.99575 1.18097 0.90011 0.91792 0.79504 0.97556 1.21559 1.32453 1.13481 0.91178 0.92092 1.25689 0.94877 0.95629 1.01881 1.70021 1.36809 1.23745 1.24616 0.85340 0.78127 0.78478 0.78631 1.19135 1.20488 1.20320 1.48715 1.73949 1.07764 1.07146 1.74225 1.05652 1.27769 0.93954 1.23844 1.06754 0.97956 0.91770 1.18812 1.01371 0.92979 0.92313 1.21037 0.98489 1.01097 0.89694 1.20781 1.04533 0.93481 0.88871 1.98367 1.87302 1.79349 1.38485 1.21223 0.98095 0.92056 0.99524 1.21520 1.00243 1.01723 0.91732 1.18986 0.95712 0.89963 0.88559 1.84817 1.36284 1.74777 1.34513 0.95319 0.96582 0.91245 0.92402 0.79139 0.86133 0.82997 0.82101 0.82547 0.74251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.95 9.29 71.98 0.67 -6.28 16 2 C 0.31 16.07 3.23 44.25 0.14 16.21 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.55 -29.52 8.74 25.60 0.22 -29.30 16 5 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -51.38 11.32 21.44 0.24 -51.14 16 8 Si 0.97 42.19 29.54 68.60 2.03 44.21 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 N -0.64 -28.37 6.10 -172.51 -1.05 -29.43 16 13 N -0.21 -8.23 9.35 -52.20 -0.49 -8.72 16 14 C 0.01 0.18 10.75 87.42 0.94 1.12 16 15 C -0.05 -1.42 5.88 -20.06 -0.12 -1.54 16 16 C -0.08 -1.79 9.56 22.56 0.22 -1.58 16 17 C -0.05 -0.98 6.31 22.29 0.14 -0.84 16 18 Cl -0.06 -1.10 28.95 -2.72 -0.08 -1.18 16 19 C -0.09 -1.57 9.81 22.34 0.22 -1.35 16 20 C -0.13 -2.74 9.97 22.33 0.22 -2.51 16 21 C 0.12 3.15 6.71 22.78 0.15 3.30 16 22 O -0.49 -15.46 11.38 -91.99 -1.05 -16.50 16 23 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 25 H 0.07 3.80 6.07 -2.38 -0.01 3.79 16 26 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 27 H 0.37 15.24 8.58 -213.32 -1.83 13.41 16 28 H 0.12 3.39 8.02 -2.91 -0.02 3.37 16 29 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.40 10.53 9.06 -74.05 -0.67 9.86 16 Total: -1.00 -61.88 299.95 1.52 -60.35 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -1.34 Total: 23.67 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 3.26 Total: -21.26 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -1.30 Total: -89.29 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -1.05 Total: -16.50 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -61.88 1.52 -60.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.167 kcal (2) G-P(sol) polarization free energy of solvation -61.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds