Wall clock time and date at job start Mon Mar 30 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47441 * 2 1 4 4 C 1.50704 * 109.47117 * 240.00122 * 2 1 3 5 5 H 1.08000 * 120.00144 * 274.42757 * 4 2 1 6 6 C 1.37874 * 120.00007 * 94.15004 * 4 2 1 7 7 N 1.31521 * 119.99988 * 182.84142 * 6 4 2 8 8 Si 1.86800 * 119.99899 * 2.83274 * 6 4 2 9 9 H 1.48503 * 109.46605 * 85.08740 * 8 6 4 10 10 H 1.48501 * 109.47035 * 205.08277 * 8 6 4 11 11 H 1.48494 * 109.47302 * 325.08970 * 8 6 4 12 12 N 1.46500 * 109.46953 * 120.00647 * 2 1 3 13 13 N 1.40110 * 119.99654 * 269.99367 * 12 2 1 14 14 C 1.29747 * 119.99836 * 179.97438 * 13 12 2 15 15 C 1.47481 * 119.99705 * 180.02562 * 14 13 12 16 16 C 1.39712 * 120.08984 * 179.97438 * 15 14 13 17 17 C 1.37849 * 119.91327 * 179.97438 * 16 15 14 18 18 C 1.38843 * 120.11577 * 359.97438 * 17 16 15 19 19 O 1.35902 * 119.90050 * 180.02562 * 18 17 16 20 20 C 1.38951 * 120.19230 * 359.97438 * 18 17 16 21 21 Cl 1.73599 * 119.96013 * 180.02562 * 20 18 17 22 22 C 1.37944 * 120.07911 * 359.78509 * 20 18 17 23 23 H 1.09002 * 109.46918 * 61.17554 * 1 2 3 24 24 H 1.08994 * 109.47355 * 181.17501 * 1 2 3 25 25 H 1.08998 * 109.46708 * 301.17841 * 1 2 3 26 26 H 0.97000 * 119.99363 * 180.02562 * 7 6 4 27 27 H 0.96998 * 120.00475 * 89.99699 * 12 2 1 28 28 H 1.08003 * 119.99860 * 0.02562 * 14 13 12 29 29 H 1.07993 * 120.04656 * 0.02562 * 16 15 14 30 30 H 1.08004 * 119.93880 * 180.02562 * 17 16 15 31 31 H 0.96699 * 114.00589 * 90.00662 * 19 18 17 32 32 H 1.08001 * 120.05523 * 180.22737 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1443 -1.7846 -1.2261 6 6 2.3436 0.0104 -2.3639 7 7 2.7286 -0.6142 -3.4554 8 14 2.2183 1.8741 -2.3492 9 1 3.4770 2.4505 -1.8116 10 1 1.9999 2.3665 -3.7330 11 1 1.0788 2.2869 -1.4911 12 7 2.0183 -0.6907 1.1961 13 7 2.2519 0.0298 2.3748 14 6 2.6839 -0.5820 3.4343 15 6 2.9292 0.1764 4.6752 16 6 3.3939 -0.4806 5.8173 17 6 3.6225 0.2320 6.9750 18 6 3.3923 1.6008 7.0075 19 8 3.6196 2.2990 8.1511 20 6 2.9312 2.2590 5.8740 21 17 2.6460 3.9707 5.9212 22 6 2.7045 1.5546 4.7098 23 1 -0.3633 0.4955 -0.9004 24 1 -0.3634 -1.0274 0.0211 25 1 -0.3633 0.5320 0.8792 26 1 2.9479 -0.1070 -4.2526 27 1 2.1799 -1.6469 1.1721 28 1 2.8638 -1.6466 3.4075 29 1 3.5745 -1.5450 5.7930 30 1 3.9821 -0.2754 7.8581 31 1 4.5184 2.6474 8.2272 32 1 2.3496 2.0672 3.8279 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888161.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:52 Heat of formation + Delta-G solvation = -8.966541 kcal Electronic energy + Delta-G solvation = -17015.556315 eV Core-core repulsion = 14002.080882 eV Total energy + Delta-G solvation = -3013.475433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72514 -38.45740 -37.57404 -37.39702 -35.61473 -33.75965 -31.82519 -31.32649 -28.64728 -27.28478 -24.63386 -23.68982 -22.10017 -21.55956 -19.46649 -19.31550 -17.76208 -17.58078 -16.75195 -16.37766 -16.28426 -15.56170 -14.99647 -14.69439 -14.65417 -14.54549 -14.13107 -13.85556 -13.39784 -13.07969 -13.02452 -12.89645 -12.71009 -12.37635 -12.09871 -12.03624 -11.84905 -11.48168 -11.29649 -10.97160 -10.83496 -9.97576 -9.76278 -8.42087 -8.38955 -6.46630 -0.18996 0.21329 1.13480 1.31827 1.34914 1.45004 1.57734 2.10612 2.27796 2.74032 3.02758 3.18656 3.78150 3.91698 4.20100 4.29177 4.43335 4.45826 4.70062 4.78911 4.86650 4.89419 4.98286 5.20560 5.23168 5.26231 5.43605 5.49585 5.68992 5.71102 6.12334 6.48322 6.62683 6.77684 7.21941 7.69368 8.76515 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.004070 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.866803 B = 6877.138272 C = 7543.924123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.273 3.727 3 H 0.032 0.968 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.935 3.065 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.245 1.245 12 N -0.636 5.636 13 N -0.242 5.242 14 C 0.026 3.974 15 C -0.030 4.030 16 C -0.072 4.072 17 C -0.124 4.124 18 C 0.114 3.886 19 O -0.495 6.495 20 C -0.077 4.077 21 Cl -0.069 7.069 22 C -0.091 4.091 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.271 0.729 27 H 0.376 0.624 28 H 0.133 0.867 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.410 0.590 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 3.811 23.103 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.050 0.950 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.574 5.574 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.169 1.169 12 N -0.373 5.373 13 N -0.052 5.052 14 C -0.183 4.183 15 C -0.033 4.033 16 C -0.093 4.093 17 C -0.143 4.143 18 C 0.067 3.933 19 O -0.308 6.308 20 C -0.104 4.104 21 Cl -0.040 7.040 22 C -0.113 4.113 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.213 0.787 28 H 0.150 0.850 29 H 0.185 0.815 30 H 0.189 0.811 31 H 0.270 0.730 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.951 4.829 22.442 23.038 hybrid contribution 0.703 -0.185 -0.739 1.037 sum 2.654 4.644 21.702 22.352 Atomic orbital electron populations 1.22237 0.97670 1.00758 0.99715 1.18597 0.91042 0.92707 0.80822 0.95011 1.21240 1.44787 0.94635 0.96210 0.93734 1.25713 0.93461 1.03237 0.94777 1.70001 1.46217 1.38137 1.03058 0.85928 0.80050 0.80178 0.77925 1.19832 1.20465 1.16857 1.48624 1.74284 1.07883 1.06491 1.73924 1.07946 1.28822 0.94522 1.23992 1.04794 0.98381 0.91142 1.18465 1.00520 0.91618 0.92673 1.21491 0.95917 1.01795 0.90075 1.21551 1.01043 0.91939 0.99737 1.18389 0.99577 0.90956 0.84408 1.84788 1.37959 1.72167 1.35936 1.21417 1.07765 0.85648 0.95613 1.98357 1.94823 1.12115 1.98721 1.21149 0.99256 0.94214 0.96642 0.93100 0.93317 0.93948 0.92008 0.78689 0.85001 0.81456 0.81130 0.72998 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.48 71.98 0.68 -5.40 16 2 C 0.27 12.79 2.84 44.25 0.13 12.91 16 3 H 0.03 1.56 5.43 -2.39 -0.01 1.54 16 4 C -0.53 -29.13 9.08 25.60 0.23 -28.89 16 5 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 6 C 0.03 1.58 5.47 84.65 0.46 2.05 16 7 N -0.94 -56.29 13.96 21.45 0.30 -55.99 16 8 Si 0.94 43.48 26.76 68.60 1.84 45.31 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.25 -10.66 6.81 99.48 0.68 -9.99 16 12 N -0.64 -26.39 6.10 -172.52 -1.05 -27.44 16 13 N -0.24 -9.00 10.61 -52.17 -0.55 -9.56 16 14 C 0.03 0.76 10.75 87.44 0.94 1.70 16 15 C -0.03 -0.73 5.87 -20.13 -0.12 -0.85 16 16 C -0.07 -1.20 9.78 22.53 0.22 -0.98 16 17 C -0.12 -1.85 9.97 22.32 0.22 -1.63 16 18 C 0.11 2.16 6.70 22.59 0.15 2.31 16 19 O -0.50 -7.86 12.94 -92.44 -1.20 -9.05 16 20 C -0.08 -1.85 6.32 22.37 0.14 -1.71 16 21 Cl -0.07 -1.65 28.49 -2.72 -0.08 -1.73 16 22 C -0.09 -2.47 9.35 22.55 0.21 -2.26 16 23 H 0.05 2.13 7.88 -2.39 -0.02 2.11 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 27 H 0.38 14.69 8.60 -213.32 -1.83 12.86 16 28 H 0.13 3.11 8.02 -2.91 -0.02 3.08 16 29 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 30 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.41 2.80 9.06 -74.06 -0.67 2.13 16 32 H 0.12 3.86 7.55 -2.91 -0.02 3.83 16 Total: -1.00 -66.76 300.80 1.16 -65.61 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -1.37 Total: 15.59 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 3.27 Total: -22.75 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -1.31 Total: -92.98 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -1.20 Total: -9.05 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.84 Total: 45.31 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -66.76 1.16 -65.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888161.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.642 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds