Wall clock time and date at job start Mon Mar 30 2020 07:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46412 * 2 1 4 4 C 1.50699 * 109.47193 * 120.00127 * 2 1 3 5 5 H 1.08000 * 120.00005 * 120.00770 * 4 2 1 6 6 C 1.37880 * 119.99921 * 300.00147 * 4 2 1 7 7 N 1.31510 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46863 * 120.00342 * 8 6 4 11 11 H 1.48498 * 109.47092 * 240.00109 * 8 6 4 12 12 N 1.46499 * 109.47276 * 240.00419 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99692 * 12 2 1 14 14 C 1.29736 * 119.99968 * 180.02562 * 13 12 2 15 15 C 1.47486 * 119.99968 * 180.02562 * 14 13 12 16 16 C 1.39722 * 120.09513 * 179.97438 * 15 14 13 17 17 C 1.37841 * 119.92043 * 179.97438 * 16 15 14 18 18 C 1.38839 * 120.11046 * 359.97438 * 17 16 15 19 19 O 1.35913 * 119.90439 * 180.02562 * 18 17 16 20 20 C 1.38951 * 120.19660 * 0.02562 * 18 17 16 21 21 Cl 1.73605 * 119.96102 * 180.02562 * 20 18 17 22 22 C 1.37942 * 120.07782 * 359.74290 * 20 18 17 23 23 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47549 * 299.99472 * 1 2 3 25 25 H 1.08998 * 109.47074 * 60.00006 * 1 2 3 26 26 H 0.97007 * 119.99893 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99984 * 269.99501 * 12 2 1 28 28 H 1.07999 * 120.00073 * 359.97438 * 14 13 12 29 29 H 1.07997 * 120.03822 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.94443 * 180.02562 * 17 16 15 31 31 H 0.96700 * 113.99776 * 89.99424 * 19 18 17 32 32 H 1.08005 * 120.05836 * 180.27659 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2870 3.6037 10 1 3.1465 -0.1874 4.8165 11 1 1.1660 -1.5868 4.8159 12 7 2.0184 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6838 -0.5815 -3.4343 15 6 2.9301 0.1772 -4.6748 16 6 3.3959 -0.4794 -5.8168 17 6 3.6244 0.2331 -6.9745 18 6 3.3920 1.6015 -7.0075 19 8 3.6182 2.2999 -8.1513 20 6 2.9288 2.2593 -5.8745 21 17 2.6396 3.9704 -5.9228 22 6 2.6929 1.5532 -4.7132 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1611 3.4845 27 1 2.1801 -1.6466 -1.1722 28 1 2.8639 -1.6460 -3.4076 29 1 3.5759 -1.5440 -5.7928 30 1 3.9840 -0.2740 -7.8575 31 1 2.8508 2.3543 -8.7372 32 1 2.3286 2.0640 -3.8341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771888164.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:56 Heat of formation + Delta-G solvation = 11.904893 kcal Electronic energy + Delta-G solvation = -16929.540039 eV Core-core repulsion = 13916.969659 eV Total energy + Delta-G solvation = -3012.570380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77287 -37.26652 -36.48457 -36.11993 -34.01707 -31.68084 -30.83644 -29.70992 -26.97541 -25.28697 -23.48753 -22.68243 -20.65804 -20.14530 -18.58627 -17.21020 -16.51821 -15.95665 -15.49736 -15.15795 -14.97614 -14.21026 -13.75106 -13.59761 -13.12517 -12.69806 -12.58027 -12.27303 -12.05016 -11.72879 -11.35901 -11.13102 -11.07898 -10.86170 -10.63013 -10.55626 -10.31117 -10.25286 -9.68390 -9.11835 -8.93161 -8.72354 -8.53320 -6.92179 -6.19475 -4.28210 0.83430 1.18283 2.13447 2.74637 3.20050 3.27770 3.30586 3.64520 3.77074 4.04874 4.31327 4.75511 4.97897 5.12912 5.13538 5.34913 5.45975 5.74143 5.85211 6.15760 6.18785 6.35088 6.63716 6.65554 6.87075 6.92569 7.07266 7.44925 7.50576 7.69601 7.77843 8.05654 8.20679 8.78416 9.17556 9.38911 10.86469 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.032437 B = 0.003494 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.003262 B = 8011.716692 C = 8538.979239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.294 3.706 3 H 0.044 0.956 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.615 5.615 13 N -0.186 5.186 14 C -0.023 4.023 15 C 0.004 3.996 16 C -0.097 4.097 17 C -0.130 4.130 18 C 0.097 3.903 19 O -0.489 6.489 20 C -0.057 4.057 21 Cl -0.064 7.064 22 C -0.082 4.082 23 H 0.026 0.974 24 H 0.091 0.909 25 H 0.013 0.987 26 H 0.265 0.735 27 H 0.371 0.629 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.387 0.613 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -0.578 -18.144 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.192 3.808 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.351 5.351 13 N 0.000 5.000 14 C -0.230 4.230 15 C 0.001 3.999 16 C -0.118 4.118 17 C -0.149 4.149 18 C 0.051 3.949 19 O -0.299 6.299 20 C -0.084 4.084 21 Cl -0.035 7.035 22 C -0.103 4.103 23 H 0.045 0.955 24 H 0.110 0.890 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.207 0.793 28 H 0.124 0.876 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.243 0.757 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.589 0.735 -17.162 17.372 hybrid contribution 0.043 -1.557 0.503 1.636 sum 2.631 -0.822 -16.660 16.886 Atomic orbital electron populations 1.22207 0.98806 0.99281 1.00679 1.18617 0.90288 0.93674 0.78192 0.93861 1.21249 1.32388 1.13383 0.90129 0.92089 1.24861 0.94761 0.94981 0.99004 1.69895 1.35903 1.22496 1.23925 0.86357 0.78626 0.79542 0.82380 1.19757 1.20773 1.20797 1.49162 1.71333 1.07934 1.06688 1.73897 1.03534 1.28395 0.94148 1.23339 1.10790 0.96949 0.91950 1.18392 0.97454 0.91834 0.92198 1.21123 0.99000 1.00247 0.91433 1.21167 1.02155 0.92187 0.99366 1.18189 1.00822 0.89804 0.86120 1.84854 1.40149 1.74642 1.30268 1.21301 1.05134 0.85769 0.96192 1.98363 1.94630 1.11864 1.98653 1.21254 0.98645 0.93546 0.96863 0.95460 0.89035 0.96796 0.92529 0.79314 0.87566 0.84814 0.84645 0.75682 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.29 37.16 0.35 -3.28 16 2 C 0.29 7.33 3.23 -69.08 -0.22 7.11 16 3 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 4 C -0.53 -14.02 8.74 -34.44 -0.30 -14.32 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.31 11.32 55.43 0.63 -23.68 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.62 -13.14 6.10 -5.88 -0.04 -13.17 16 13 N -0.19 -3.64 10.61 32.16 0.34 -3.30 16 14 C -0.02 -0.37 10.75 -14.67 -0.16 -0.53 16 15 C 0.00 0.06 5.87 -105.03 -0.62 -0.56 16 16 C -0.10 -1.06 9.78 -39.17 -0.38 -1.45 16 17 C -0.13 -1.33 9.97 -39.50 -0.39 -1.72 16 18 C 0.10 1.13 6.70 -39.10 -0.26 0.87 16 19 O -0.49 -4.94 12.94 -19.47 -0.25 -5.20 16 20 C -0.06 -0.76 6.32 -39.43 -0.25 -1.01 16 21 Cl -0.06 -0.83 28.49 -51.86 -1.48 -2.30 16 22 C -0.08 -1.20 9.35 -39.15 -0.37 -1.57 16 23 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.37 7.26 8.58 -182.59 -1.57 5.70 16 28 H 0.11 1.46 8.02 -52.49 -0.42 1.04 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.39 2.15 9.06 45.56 0.41 2.56 16 32 H 0.15 2.36 7.55 -52.48 -0.40 1.97 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -28.91 301.54 -7.92 -36.83 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.94 Total: 5.60 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.70 Total: -14.77 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.93 Total: -40.15 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.25 Total: -5.20 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.48 Total: -2.30 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.91 -7.92 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888164.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.730 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds