Wall clock time and date at job start Mon Mar 30 2020 07:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46412 * 2 1 4 4 C 1.50699 * 109.47193 * 120.00127 * 2 1 3 5 5 H 1.08000 * 120.00005 * 120.00770 * 4 2 1 6 6 C 1.37880 * 119.99921 * 300.00147 * 4 2 1 7 7 N 1.31510 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46863 * 120.00342 * 8 6 4 11 11 H 1.48498 * 109.47092 * 240.00109 * 8 6 4 12 12 N 1.46499 * 109.47276 * 240.00419 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99692 * 12 2 1 14 14 C 1.29736 * 119.99968 * 180.02562 * 13 12 2 15 15 C 1.47486 * 119.99968 * 180.02562 * 14 13 12 16 16 C 1.39722 * 120.09513 * 179.97438 * 15 14 13 17 17 C 1.37841 * 119.92043 * 179.97438 * 16 15 14 18 18 C 1.38839 * 120.11046 * 359.97438 * 17 16 15 19 19 O 1.35913 * 119.90439 * 180.02562 * 18 17 16 20 20 C 1.38951 * 120.19660 * 0.02562 * 18 17 16 21 21 Cl 1.73605 * 119.96102 * 180.02562 * 20 18 17 22 22 C 1.37942 * 120.07782 * 359.74290 * 20 18 17 23 23 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47549 * 299.99472 * 1 2 3 25 25 H 1.08998 * 109.47074 * 60.00006 * 1 2 3 26 26 H 0.97007 * 119.99893 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99984 * 269.99501 * 12 2 1 28 28 H 1.07999 * 120.00073 * 359.97438 * 14 13 12 29 29 H 1.07997 * 120.03822 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.94443 * 180.02562 * 17 16 15 31 31 H 0.96700 * 113.99776 * 89.99424 * 19 18 17 32 32 H 1.08005 * 120.05836 * 180.27659 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2870 3.6037 10 1 3.1465 -0.1874 4.8165 11 1 1.1660 -1.5868 4.8159 12 7 2.0184 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6838 -0.5815 -3.4343 15 6 2.9301 0.1772 -4.6748 16 6 3.3959 -0.4794 -5.8168 17 6 3.6244 0.2331 -6.9745 18 6 3.3920 1.6015 -7.0075 19 8 3.6182 2.2999 -8.1513 20 6 2.9288 2.2593 -5.8745 21 17 2.6396 3.9704 -5.9228 22 6 2.6929 1.5532 -4.7132 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1611 3.4845 27 1 2.1801 -1.6466 -1.1722 28 1 2.8639 -1.6460 -3.4076 29 1 3.5759 -1.5440 -5.7928 30 1 3.9840 -0.2740 -7.8575 31 1 2.8508 2.3543 -8.7372 32 1 2.3286 2.0640 -3.8341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888164.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:54 Heat of formation + Delta-G solvation = -7.408661 kcal Electronic energy + Delta-G solvation = -16930.377538 eV Core-core repulsion = 13916.969659 eV Total energy + Delta-G solvation = -3013.407879 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71954 -38.43092 -37.55392 -37.38320 -35.71692 -33.36016 -31.81114 -31.05760 -28.48128 -27.29331 -24.63615 -23.69793 -22.32438 -21.50308 -19.45061 -18.87409 -17.76810 -17.37401 -16.80319 -16.39004 -16.26817 -15.57342 -14.98266 -14.69205 -14.51003 -14.35709 -14.06935 -13.40782 -13.33330 -13.06516 -12.88472 -12.84160 -12.59210 -12.31841 -12.14220 -12.09538 -12.00288 -11.47579 -11.16286 -10.91496 -10.60292 -9.96183 -9.75342 -8.42072 -8.18103 -6.35938 -0.17792 0.21715 1.14074 1.42207 1.43291 1.54984 1.59888 2.14410 2.45963 2.75060 3.10557 3.18708 3.78786 3.92574 4.21096 4.31345 4.45701 4.69309 4.74950 4.90399 4.96086 5.07206 5.13030 5.22329 5.27920 5.44723 5.57567 5.70842 5.77837 5.87592 6.16139 6.39178 6.78615 6.83137 7.35770 7.75471 8.86488 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.032437 B = 0.003494 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.003262 B = 8011.716692 C = 8538.979239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.305 3.695 3 H 0.000 1.000 4 C -0.547 4.547 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.636 5.636 13 N -0.243 5.243 14 C 0.022 3.978 15 C -0.030 4.030 16 C -0.072 4.072 17 C -0.123 4.123 18 C 0.114 3.886 19 O -0.495 6.495 20 C -0.077 4.077 21 Cl -0.070 7.070 22 C -0.093 4.093 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.017 0.983 26 H 0.267 0.733 27 H 0.376 0.624 28 H 0.134 0.866 29 H 0.170 0.830 30 H 0.173 0.827 31 H 0.411 0.589 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -2.454 -20.529 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.202 3.798 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.373 5.373 13 N -0.054 5.054 14 C -0.187 4.187 15 C -0.032 4.032 16 C -0.092 4.092 17 C -0.142 4.142 18 C 0.067 3.933 19 O -0.308 6.308 20 C -0.104 4.104 21 Cl -0.041 7.041 22 C -0.114 4.114 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.213 0.787 28 H 0.151 0.849 29 H 0.187 0.813 30 H 0.190 0.810 31 H 0.270 0.730 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.799 -1.137 -19.581 19.978 hybrid contribution -0.241 -0.912 0.839 1.262 sum 3.558 -2.049 -18.742 19.187 Atomic orbital electron populations 1.22017 0.98727 0.99161 0.99628 1.18138 0.90318 0.91610 0.79770 0.98223 1.21552 1.32457 1.13515 0.91074 0.91886 1.25720 0.94872 0.95636 1.01986 1.70027 1.36878 1.23782 1.24626 0.85316 0.78146 0.78461 0.78514 1.18959 1.20686 1.20185 1.48523 1.74264 1.07756 1.06753 1.73957 1.07641 1.29101 0.94660 1.23999 1.05122 0.98367 0.91203 1.18484 1.00447 0.91570 0.92729 1.21491 0.95950 1.01847 0.89945 1.21555 1.00926 0.91377 1.00309 1.18381 0.98576 0.90436 0.85928 1.84795 1.41593 1.74518 1.29901 1.21422 1.06638 0.85699 0.96672 1.98357 1.94768 1.12302 1.98665 1.21134 0.99336 0.94335 0.96620 0.94908 0.91331 0.96412 0.92417 0.78657 0.84855 0.81293 0.80961 0.72985 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 9.29 71.98 0.67 -6.16 16 2 C 0.31 15.95 3.23 44.24 0.14 16.09 16 3 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 4 C -0.55 -29.57 8.74 25.60 0.22 -29.35 16 5 H 0.06 3.29 7.79 -2.91 -0.02 3.27 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -51.86 11.32 21.45 0.24 -51.62 16 8 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 12 N -0.64 -27.99 6.10 -172.52 -1.05 -29.05 16 13 N -0.24 -9.77 10.61 -52.17 -0.55 -10.32 16 14 C 0.02 0.68 10.75 87.44 0.94 1.62 16 15 C -0.03 -0.77 5.87 -20.13 -0.12 -0.89 16 16 C -0.07 -1.25 9.78 22.53 0.22 -1.03 16 17 C -0.12 -1.92 9.97 22.32 0.22 -1.70 16 18 C 0.11 2.28 6.70 22.58 0.15 2.43 16 19 O -0.49 -8.26 12.94 -92.57 -1.20 -9.46 16 20 C -0.08 -1.97 6.32 22.37 0.14 -1.83 16 21 Cl -0.07 -1.79 28.49 -2.72 -0.08 -1.87 16 22 C -0.09 -2.72 9.35 22.55 0.21 -2.51 16 23 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 27 H 0.38 14.95 8.58 -213.32 -1.83 13.12 16 28 H 0.13 3.26 8.02 -2.91 -0.02 3.23 16 29 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.41 3.04 9.06 -74.06 -0.67 2.37 16 32 H 0.12 4.11 7.55 -2.91 -0.02 4.08 16 Total: -1.00 -65.20 301.54 1.30 -63.90 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -1.34 Total: 15.93 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 3.25 Total: -21.89 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.36 Total: -90.99 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.20 Total: -9.46 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -65.20 1.30 -63.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888164.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.490 kcal (2) G-P(sol) polarization free energy of solvation -65.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds