Wall clock time and date at job start Mon Mar 30 2020 07:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46954 * 60.00173 * 8 6 4 10 10 H 1.48503 * 109.47431 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47490 * 300.00258 * 8 6 4 12 12 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 13 13 O 1.21278 * 120.00240 * 120.00385 * 12 2 1 14 14 N 1.34780 * 120.00249 * 300.00184 * 12 2 1 15 15 N 1.40093 * 120.00397 * 180.02562 * 14 12 2 16 16 C 1.39675 * 120.00201 * 179.97438 * 15 14 12 17 17 C 1.38939 * 120.06683 * 359.72508 * 16 15 14 18 18 C 1.38088 * 119.94977 * 179.71899 * 17 16 15 19 19 C 1.38295 * 120.08758 * 0.55577 * 18 17 16 20 20 C 1.38385 * 120.13275 * 359.72423 * 19 18 17 21 21 Cl 1.73605 * 119.97292 * 180.02562 * 20 19 18 22 22 C 1.38241 * 120.05082 * 359.97438 * 20 19 18 23 23 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99818 * 359.97438 * 14 12 2 28 28 H 0.97004 * 119.99823 * 0.02562 * 15 14 12 29 29 H 1.07999 * 120.02343 * 0.02562 * 17 16 15 30 30 H 1.07999 * 119.96180 * 180.27415 * 18 17 16 31 31 H 1.07996 * 119.93121 * 179.69719 * 19 18 17 32 32 H 1.07997 * 120.04389 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8281 -2.5198 -4.0080 10 1 1.8280 -0.4193 -5.2204 11 1 3.8076 -1.1191 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2500 2.4546 15 7 2.1740 -0.9100 3.5985 16 6 1.8370 -0.4325 4.8671 17 6 1.0430 0.7003 4.9962 18 6 0.7064 1.1669 6.2515 19 6 1.1681 0.5148 7.3803 20 6 1.9639 -0.6104 7.2559 21 17 2.5406 -1.4262 8.6757 22 6 2.2992 -1.0861 6.0019 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7090 1.1614 -3.4844 27 1 1.1493 0.5389 2.5436 28 1 2.7323 -1.6983 3.5095 29 1 0.6852 1.2126 4.1153 30 1 0.0856 2.0449 6.3520 31 1 0.9074 0.8848 8.3608 32 1 2.9199 -1.9645 5.9049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820685037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:01 Heat of formation + Delta-G solvation = -5.053275 kcal Electronic energy + Delta-G solvation = -17321.819296 eV Core-core repulsion = 14308.513554 eV Total energy + Delta-G solvation = -3013.305741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.10493 -40.05056 -37.65627 -36.65266 -35.83453 -33.47964 -32.17659 -31.50729 -29.05131 -27.21677 -24.86262 -23.87374 -22.86159 -21.48347 -19.47332 -18.48911 -18.03177 -17.40658 -16.89949 -16.45193 -16.14143 -15.86782 -15.30229 -15.00444 -14.82982 -14.55867 -14.44982 -13.65666 -13.29502 -13.00099 -12.75992 -12.73783 -12.61794 -12.40293 -12.27318 -12.05057 -12.03547 -11.87752 -11.09453 -10.76123 -10.45390 -10.36424 -9.78440 -8.29930 -8.17409 -6.28043 0.21710 0.46975 0.86538 1.28429 1.43276 1.43473 1.52754 1.76591 2.42995 2.74438 3.13041 3.26455 3.90360 4.02413 4.18651 4.24010 4.46430 4.61311 4.71241 4.80190 4.88915 4.96347 5.15086 5.32584 5.42682 5.47304 5.59311 5.72275 5.81516 5.99153 6.17575 6.43149 6.69846 6.81083 7.36860 7.48154 8.88156 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.048791 B = 0.003445 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.738559 B = 8126.937569 C = 8614.131327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.039 3.961 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.051 0.949 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.582 6.582 14 N -0.521 5.521 15 N -0.547 5.547 16 C 0.220 3.780 17 C -0.207 4.207 18 C -0.047 4.047 19 C -0.173 4.173 20 C 0.011 3.989 21 Cl -0.069 7.069 22 C -0.198 4.198 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.267 0.733 27 H 0.431 0.569 28 H 0.429 0.571 29 H 0.133 0.867 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 2.591 19.575 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.017 3.983 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.460 6.460 14 N -0.269 5.269 15 N -0.271 5.271 16 C 0.115 3.885 17 C -0.231 4.231 18 C -0.065 4.065 19 C -0.193 4.193 20 C -0.017 4.017 21 Cl -0.041 7.041 22 C -0.222 4.222 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.275 0.725 28 H 0.270 0.730 29 H 0.151 0.849 30 H 0.182 0.818 31 H 0.168 0.832 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.919 2.034 19.291 19.493 hybrid contribution 0.526 -0.670 -0.911 1.247 sum -1.394 1.364 18.380 18.484 Atomic orbital electron populations 1.21641 0.94610 0.99801 1.02206 1.18772 0.95537 0.96198 0.87828 0.93025 1.21224 1.32091 1.13009 0.90863 0.93123 1.25541 0.95081 0.95686 1.01284 1.69918 1.36855 1.23322 1.24581 0.85656 0.78659 0.78725 0.78867 1.20218 1.19948 1.20228 1.22002 0.78930 0.84446 0.83492 1.90532 1.40150 1.28601 1.86716 1.45177 1.53830 1.30631 0.97267 1.43498 1.56984 1.31494 0.95100 1.17777 0.94477 0.93787 0.82421 1.20874 1.04308 0.98049 0.99851 1.21168 0.96435 0.98924 0.89986 1.21114 1.01361 0.96052 1.00814 1.20634 0.98747 0.95399 0.86892 1.98367 1.87858 1.78884 1.38943 1.20297 1.08163 1.04274 0.89493 0.92640 0.90589 0.95636 0.92414 0.72511 0.72967 0.84903 0.81845 0.83170 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.87 71.98 0.64 -4.67 16 2 C 0.04 1.87 2.64 -12.29 -0.03 1.84 16 3 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 4 C -0.53 -29.76 8.37 25.60 0.21 -29.54 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 1.29 5.30 84.65 0.45 1.74 16 7 N -0.91 -49.02 11.32 21.45 0.24 -48.77 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.52 22.81 7.27 87.66 0.64 23.45 16 13 O -0.58 -29.65 15.30 -3.02 -0.05 -29.69 16 14 N -0.52 -17.20 6.11 -173.53 -1.06 -18.26 16 15 N -0.55 -16.32 6.45 -51.38 -0.33 -16.65 16 16 C 0.22 5.44 6.72 38.21 0.26 5.70 16 17 C -0.21 -4.32 9.48 22.40 0.21 -4.11 16 18 C -0.05 -0.76 10.04 22.25 0.22 -0.53 16 19 C -0.17 -2.94 9.83 22.32 0.22 -2.72 16 20 C 0.01 0.22 6.32 22.31 0.14 0.36 16 21 Cl -0.07 -1.31 28.95 -2.72 -0.08 -1.39 16 22 C -0.20 -4.50 9.68 22.42 0.22 -4.28 16 23 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 24 H 0.08 3.61 6.07 -2.39 -0.01 3.59 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.43 11.66 6.02 -213.33 -1.28 10.38 16 28 H 0.43 13.36 8.01 -213.32 -1.71 11.65 16 29 H 0.13 2.47 6.20 -2.91 -0.02 2.46 16 30 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -63.28 292.88 2.10 -61.17 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -1.82 Total: 20.66 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 3.18 Total: -12.78 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.15 Total: -83.68 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.69 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -63.28 2.10 -61.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820685037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.120 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds