Wall clock time and date at job start Mon Mar 30 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38493 * 120.38774 * 2 1 4 4 C 1.39269 * 118.37425 * 180.02562 * 3 2 1 5 5 N 1.40005 * 120.47039 * 179.97438 * 4 3 2 6 6 C 1.34784 * 120.00183 * 32.67580 * 5 4 3 7 7 O 1.21285 * 119.99724 * 5.26126 * 6 5 4 8 8 C 1.50698 * 119.99810 * 185.25839 * 6 5 4 9 9 H 1.08999 * 109.47622 * 60.00081 * 8 6 5 10 10 C 1.53006 * 109.47224 * 299.99829 * 8 6 5 11 11 C 1.50700 * 109.47056 * 180.02562 * 8 6 5 12 12 H 1.08010 * 119.99663 * 359.97438 * 11 8 6 13 13 C 1.37870 * 120.00231 * 180.02562 * 11 8 6 14 14 N 1.31507 * 120.00082 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00010 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47385 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47144 * 119.99999 * 15 13 11 18 18 H 1.48507 * 109.47378 * 239.99865 * 15 13 11 19 19 C 1.38833 * 119.05721 * 0.02562 * 4 3 2 20 20 N 1.31823 * 120.67403 * 359.97438 * 19 4 3 21 21 C 1.31966 * 121.78292 * 359.70162 * 20 19 4 22 22 Cl 1.73601 * 119.56113 * 180.30932 * 21 20 19 23 23 H 1.09002 * 109.47424 * 89.99414 * 1 2 3 24 24 H 1.09001 * 109.47024 * 330.00021 * 1 2 3 25 25 H 1.09000 * 109.47529 * 209.99632 * 1 2 3 26 26 H 1.07998 * 120.81748 * 0.02891 * 3 2 1 27 27 H 0.96997 * 120.00048 * 212.67355 * 5 4 3 28 28 H 1.09001 * 109.47198 * 300.00104 * 10 8 6 29 29 H 1.09000 * 109.46695 * 60.00242 * 10 8 6 30 30 H 1.08996 * 109.46746 * 180.02562 * 10 8 6 31 31 H 0.97008 * 120.00141 * 179.97438 * 14 13 11 32 32 H 1.07995 * 119.66302 * 180.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1947 0.0000 4 6 3.5994 1.1457 -0.0005 5 7 4.3513 2.3267 -0.0011 6 6 3.8847 3.4231 0.6290 7 8 2.8610 3.3608 1.2764 8 6 4.6351 4.7261 0.5292 9 1 4.6984 5.0299 -0.5157 10 6 6.0456 4.5470 1.0945 11 6 3.9092 5.7855 1.3177 12 1 2.9955 5.5398 1.8387 13 6 4.4108 7.0685 1.3733 14 7 5.5229 7.3678 0.7385 15 14 3.5106 8.3818 2.3501 16 1 2.2946 7.7935 2.9672 17 1 4.4026 8.9044 3.4162 18 1 3.1191 9.4915 1.4442 19 6 4.2306 -0.0908 -0.0016 20 7 3.5265 -1.2053 -0.0016 21 6 2.2070 -1.1938 0.0053 22 17 1.3374 -2.6963 0.0130 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3634 -0.8900 0.5138 26 1 1.6873 2.1411 0.0005 27 1 5.2080 2.3560 -0.4549 28 1 5.9823 4.2433 2.1394 29 1 6.5708 3.7807 0.5245 30 1 6.5881 5.4897 1.0227 31 1 5.8756 8.2707 0.7773 32 1 5.3094 -0.1401 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829451630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:17 Heat of formation + Delta-G solvation = -18.670944 kcal Electronic energy + Delta-G solvation = -17706.649020 eV Core-core repulsion = 14692.752772 eV Total energy + Delta-G solvation = -3013.896248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70209 -38.91600 -36.63543 -34.65839 -34.00016 -33.69108 -31.04166 -29.40943 -27.41544 -25.28915 -24.15277 -22.93835 -21.65138 -19.71796 -17.59848 -17.20529 -16.77601 -16.06491 -15.69121 -14.86088 -14.57434 -14.24747 -13.86191 -13.37042 -13.19320 -12.91961 -12.80419 -12.70041 -12.12160 -11.92795 -11.63086 -11.16289 -11.13565 -10.87975 -10.81421 -10.54794 -10.35850 -10.09915 -9.77863 -9.36036 -9.12531 -8.82836 -8.48508 -8.05334 -6.16016 -4.20414 0.90725 1.20602 1.84340 3.23345 3.25865 3.32964 3.36704 3.45823 3.74858 4.36492 4.44804 4.77623 4.84452 4.90902 5.17921 5.31534 5.49088 5.52772 5.80860 5.91596 6.02916 6.11285 6.31315 6.44588 6.64070 6.73511 6.87261 7.27714 7.57187 7.67994 7.74484 7.92490 8.16050 8.79122 8.89109 9.46116 10.91532 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.039076 B = 0.004168 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.383022 B = 6716.297163 C = 7290.538687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.078 4.078 4 C 0.129 3.871 5 N -0.682 5.682 6 C 0.520 3.480 7 O -0.519 6.519 8 C 0.032 3.968 9 H 0.059 0.941 10 C -0.136 4.136 11 C -0.506 4.506 12 H 0.076 0.924 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.901 3.099 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.074 3.926 20 N -0.456 5.456 21 C 0.138 3.862 22 Cl -0.042 7.042 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.413 0.587 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.097 0.903 31 H 0.262 0.738 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -13.659 -4.040 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 C -0.107 4.107 4 C 0.030 3.970 5 N -0.328 5.328 6 C 0.311 3.689 7 O -0.393 6.393 8 C 0.011 3.989 9 H 0.077 0.923 10 C -0.194 4.194 11 C -0.545 4.545 12 H 0.094 0.906 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.087 4.087 20 N -0.165 5.165 21 C -0.027 4.027 22 Cl -0.014 7.014 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.175 0.825 27 H 0.249 0.751 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.137 -14.366 -3.586 15.374 hybrid contribution -0.269 1.346 0.274 1.400 sum -4.406 -13.020 -3.313 14.139 Atomic orbital electron populations 1.20836 0.89362 1.03911 1.03100 1.20448 0.98019 0.91105 1.00189 1.21598 0.92601 0.98904 0.97548 1.19032 0.92089 0.88168 0.97721 1.44196 1.23571 1.09517 1.55525 1.22460 0.85520 0.85319 0.75594 1.90558 1.25129 1.84531 1.39038 1.18948 0.93198 0.86918 0.99839 0.92309 1.21794 0.97142 1.02162 0.98298 1.21135 1.09569 0.92797 1.30953 0.90606 1.24938 0.95042 0.98520 0.95570 1.69862 1.20388 1.20210 1.42861 0.86375 0.79920 0.81127 0.79725 1.19518 1.20945 1.20939 1.22404 0.99983 0.85239 1.01070 1.66845 1.06585 1.31188 1.11902 1.21291 0.89673 0.86682 1.05099 1.98359 1.73612 1.32596 1.96787 0.90383 0.90458 0.90588 0.82484 0.75061 0.94721 0.96753 0.88466 0.92813 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.63 36.00 0.35 -0.91 16 2 C -0.09 -1.31 5.90 -104.47 -0.62 -1.93 16 3 C -0.08 -1.24 8.45 -39.10 -0.33 -1.57 16 4 C 0.13 1.99 6.31 -83.52 -0.53 1.46 16 5 N -0.68 -10.86 5.28 -9.76 -0.05 -10.92 16 6 C 0.52 10.76 6.91 -10.98 -0.08 10.68 16 7 O -0.52 -12.23 13.15 5.55 0.07 -12.16 16 8 C 0.03 0.73 2.65 -92.92 -0.25 0.49 16 9 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 10 C -0.14 -2.88 8.86 37.16 0.33 -2.55 16 11 C -0.51 -13.51 8.37 -34.44 -0.29 -13.80 16 12 H 0.08 2.14 6.75 -52.48 -0.35 1.79 16 13 C 0.06 1.60 5.30 -17.83 -0.09 1.51 16 14 N -0.89 -23.93 11.32 55.43 0.63 -23.30 16 15 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.07 1.02 11.12 -17.34 -0.19 0.83 16 20 N -0.46 -6.79 10.33 -10.21 -0.11 -6.90 16 21 C 0.14 1.97 7.27 -17.44 -0.13 1.84 16 22 Cl -0.04 -0.51 27.44 -51.86 -1.42 -1.93 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 25 H 0.08 0.76 6.90 -51.93 -0.36 0.40 16 26 H 0.16 2.69 6.47 -52.49 -0.34 2.35 16 27 H 0.41 5.31 8.10 -40.82 -0.33 4.98 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.23 7.45 -51.93 -0.39 -0.15 16 30 H 0.10 2.30 6.07 -51.93 -0.32 1.99 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 32 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -29.31 289.80 -6.69 -35.99 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.33 Total: 2.88 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.82 Total: -3.94 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.47 Total: -41.12 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.93 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.31 -6.69 -35.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829451630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.324 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds