Wall clock time and date at job start Mon Mar 30 2020 07:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38509 * 120.81208 * 2 1 4 4 C 1.38382 * 119.22128 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 119.55333 * 180.02562 * 4 3 2 6 6 N 1.31967 * 120.89173 * 359.97438 * 4 3 2 7 7 C 1.31825 * 121.77446 * 0.02562 * 6 4 3 8 8 C 1.38833 * 120.68237 * 359.73517 * 7 6 4 9 9 N 1.40003 * 120.47652 * 180.26695 * 8 7 6 10 10 C 1.34777 * 119.99651 * 24.75794 * 9 8 7 11 11 O 1.21290 * 120.00201 * 5.53718 * 10 9 8 12 12 C 1.50702 * 119.99849 * 185.53288 * 10 9 8 13 13 H 1.09002 * 109.47004 * 60.00464 * 12 10 9 14 14 C 1.53000 * 109.47128 * 300.00282 * 12 10 9 15 15 C 1.50703 * 109.46919 * 180.02562 * 12 10 9 16 16 H 1.07993 * 120.00445 * 0.02562 * 15 12 10 17 17 C 1.37882 * 119.99433 * 180.02562 * 15 12 10 18 18 N 1.31506 * 120.00319 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99402 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47044 * 120.00498 * 19 17 15 22 22 H 1.48505 * 109.47027 * 239.99853 * 19 17 15 23 23 H 1.08994 * 109.47049 * 89.99935 * 1 2 3 24 24 H 1.09007 * 109.46800 * 330.00110 * 1 2 3 25 25 H 1.09002 * 109.46982 * 210.00282 * 1 2 3 26 26 H 1.07992 * 120.38626 * 359.95282 * 3 2 1 27 27 H 1.08001 * 119.65519 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00213 * 204.76334 * 9 8 7 29 29 H 1.09004 * 109.46687 * 179.97438 * 14 12 10 30 30 H 1.08992 * 109.47181 * 299.99956 * 14 12 10 31 31 H 1.08997 * 109.46959 * 60.00272 * 14 12 10 32 32 H 0.96997 * 120.00059 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1896 0.0000 4 6 3.5997 1.1512 0.0005 5 17 4.4976 2.6370 0.0012 6 7 4.2456 0.0003 0.0016 7 6 3.6080 -1.1535 0.0016 8 6 2.2203 -1.1961 0.0061 9 7 1.5476 -2.4239 0.0117 10 6 2.1549 -3.5227 0.5018 11 8 3.2433 -3.4299 1.0290 12 6 1.4817 -4.8667 0.3948 13 1 1.3123 -5.1057 -0.6551 14 6 0.1412 -4.8257 1.1313 15 6 2.3628 -5.9206 1.0145 16 1 3.3148 -5.6448 1.4434 17 6 1.9534 -7.2371 1.0340 18 7 0.7943 -7.5731 0.5114 19 14 3.0459 -8.5436 1.8015 20 1 4.2882 -7.9117 2.3136 21 1 2.3236 -9.1966 2.9227 22 1 3.3944 -9.5614 0.7778 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 0.8901 0.5139 25 1 -0.3633 -0.8900 0.5139 26 1 1.6962 2.1359 -0.0008 27 1 4.1710 -2.0751 0.0020 28 1 0.6445 -2.4837 -0.3371 29 1 -0.3459 -5.7977 1.0534 30 1 0.3106 -4.5868 2.1811 31 1 -0.4962 -4.0634 0.6834 32 1 0.5062 -8.4992 0.5254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830447794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:46 Heat of formation + Delta-G solvation = -16.599046 kcal Electronic energy + Delta-G solvation = -17807.814284 eV Core-core repulsion = 14794.007881 eV Total energy + Delta-G solvation = -3013.806404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = -0.06 seconds Orbital eigenvalues (eV) -40.79954 -38.85727 -36.62171 -35.03820 -33.98814 -33.29525 -30.94405 -29.41223 -27.85544 -25.29714 -24.14196 -22.65012 -21.81847 -19.82224 -17.72078 -16.94626 -16.69823 -16.05489 -15.63809 -14.93267 -14.53535 -14.30144 -13.92554 -13.37330 -13.30677 -13.24400 -12.91757 -12.69152 -12.03362 -11.85958 -11.59586 -11.29539 -11.14174 -10.89326 -10.80105 -10.52585 -10.38751 -10.09082 -9.62252 -9.44943 -9.13001 -8.90876 -8.48704 -7.96238 -6.15843 -4.20075 0.98869 1.12938 1.86945 3.22670 3.26796 3.33671 3.36194 3.46041 3.78876 4.37754 4.50351 4.62655 4.83869 4.93391 5.18234 5.20382 5.36510 5.49939 5.66442 5.80443 5.95010 6.05794 6.29285 6.42776 6.61775 6.72021 6.88797 7.26274 7.55596 7.71375 7.82455 7.92510 8.14997 8.75956 8.89796 9.46572 10.91772 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.035088 B = 0.004335 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.797023 B = 6458.228626 C = 7153.153309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.133 4.133 4 C 0.140 3.860 5 Cl -0.046 7.046 6 N -0.460 5.460 7 C 0.107 3.893 8 C 0.123 3.877 9 N -0.676 5.676 10 C 0.519 3.481 11 O -0.515 6.515 12 C 0.032 3.968 13 H 0.060 0.940 14 C -0.136 4.136 15 C -0.506 4.506 16 H 0.077 0.923 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.143 0.857 27 H 0.188 0.812 28 H 0.411 0.589 29 H 0.097 0.903 30 H 0.034 0.966 31 H 0.012 0.988 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 15.571 -2.999 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.154 4.154 4 C -0.025 4.025 5 Cl -0.018 7.018 6 N -0.171 5.171 7 C -0.053 4.053 8 C 0.023 3.977 9 N -0.321 5.321 10 C 0.310 3.690 11 O -0.388 6.388 12 C 0.011 3.989 13 H 0.078 0.922 14 C -0.194 4.194 15 C -0.545 4.545 16 H 0.095 0.905 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.205 0.795 28 H 0.248 0.752 29 H 0.116 0.884 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.642 15.484 -2.635 15.793 hybrid contribution -0.755 -0.536 0.225 0.953 sum -2.397 14.949 -2.410 15.330 Atomic orbital electron populations 1.20749 0.89386 1.03889 1.03075 1.20016 0.97044 0.90979 1.01037 1.21430 0.92210 0.98899 1.02878 1.21477 0.88685 0.88463 1.03825 1.98371 1.76842 1.29729 1.96837 1.67097 1.40841 0.97162 1.11969 1.23272 0.90503 0.95660 0.95910 1.19002 0.93298 0.86602 0.98773 1.44232 1.19217 1.06266 1.62394 1.22508 0.85839 0.86229 0.74380 1.90523 1.21441 1.85700 1.41177 1.18953 0.94378 0.86151 0.99378 0.92223 1.21797 0.96547 1.02699 0.98335 1.21142 1.04500 0.90717 1.38101 0.90490 1.24938 0.95304 0.98578 0.95224 1.69856 1.19927 1.18182 1.45402 0.86368 0.80785 0.81085 0.78890 1.19449 1.20968 1.20940 0.90258 0.90479 0.90707 0.83910 0.79525 0.75191 0.88403 0.94677 0.96912 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.54 36.00 0.34 -0.67 16 2 C -0.08 -1.00 5.93 -104.14 -0.62 -1.62 16 3 C -0.13 -1.61 9.58 -39.43 -0.38 -1.99 16 4 C 0.14 2.03 7.27 -17.44 -0.13 1.91 16 5 Cl -0.05 -0.58 29.10 -51.86 -1.51 -2.09 16 6 N -0.46 -7.87 10.33 -10.21 -0.11 -7.98 16 7 C 0.11 1.89 9.90 -17.33 -0.17 1.72 16 8 C 0.12 1.93 6.44 -83.52 -0.54 1.39 16 9 N -0.68 -10.82 4.95 -9.76 -0.05 -10.87 16 10 C 0.52 10.74 6.96 -10.98 -0.08 10.67 16 11 O -0.52 -12.18 12.65 5.55 0.07 -12.11 16 12 C 0.03 0.74 2.65 -92.92 -0.25 0.49 16 13 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 14 C -0.14 -2.84 8.86 37.16 0.33 -2.51 16 15 C -0.51 -13.50 8.37 -34.44 -0.29 -13.79 16 16 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -23.87 11.32 55.43 0.63 -23.24 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.07 0.68 7.08 -51.93 -0.37 0.32 16 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.19 3.64 5.80 -52.49 -0.30 3.34 16 28 H 0.41 5.37 6.78 -40.82 -0.28 5.09 16 29 H 0.10 2.29 6.07 -51.93 -0.32 1.98 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.01 0.20 7.45 -51.93 -0.39 -0.18 16 32 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -29.20 288.85 -6.75 -35.95 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.25 Total: 2.90 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.86 Total: -2.89 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.47 Total: -42.09 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.51 Total: -2.09 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.20 -6.75 -35.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830447794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.351 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.06 seconds