Wall clock time and date at job start Mon Mar 30 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48506 * 109.46982 * 239.99481 * 3 2 1 5 5 H 1.48500 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47383 * 119.99916 * 3 2 1 7 7 C 1.37872 * 120.00614 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00358 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47477 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47192 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99861 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00036 * 180.27464 * 12 11 10 15 15 C 1.40003 * 120.00182 * 175.05273 * 14 12 11 16 16 C 1.39304 * 120.47141 * 34.95310 * 15 14 12 17 17 C 1.38460 * 118.37527 * 180.02562 * 16 15 14 18 18 C 1.38430 * 119.22242 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.55581 * 180.02562 * 18 17 16 20 20 N 1.31930 * 120.88339 * 0.02562 * 18 17 16 21 21 C 1.31858 * 121.78140 * 359.70240 * 20 18 17 22 22 H 0.96995 * 120.00511 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46747 * 59.99813 * 9 7 2 24 24 H 1.09005 * 109.47184 * 300.00302 * 9 7 2 25 25 H 1.08997 * 109.47524 * 59.99803 * 10 9 7 26 26 H 1.09005 * 109.47071 * 300.00262 * 10 9 7 27 27 H 1.09004 * 109.47453 * 59.99958 * 11 10 9 28 28 H 1.09000 * 109.46841 * 299.99653 * 11 10 9 29 29 H 0.97005 * 119.99607 * 355.04579 * 14 12 11 30 30 H 1.07997 * 120.80930 * 359.97438 * 16 15 14 31 31 H 1.07995 * 120.39012 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.65817 * 180.28964 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 6 2.4599 -6.1324 0.0018 13 8 3.6523 -5.9107 0.0032 14 7 2.0107 -7.4031 -0.0042 15 6 2.9167 -8.4654 -0.1082 16 6 4.1732 -8.3831 0.4877 17 6 5.0351 -9.4588 0.3571 18 6 4.6238 -10.5717 -0.3559 19 17 5.6972 -11.9256 -0.5245 20 7 3.4269 -10.6173 -0.9091 21 6 2.5746 -9.6166 -0.8037 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8922 26 1 2.8728 -3.6046 -0.8877 27 1 0.8548 -5.0450 -0.8895 28 1 0.8529 -5.0446 0.8905 29 1 1.0597 -7.5816 0.0636 30 1 4.4681 -7.5014 1.0373 31 1 6.0172 -9.4296 0.8056 32 1 1.6017 -9.6924 -1.2664 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846798533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:58 Heat of formation + Delta-G solvation = -23.798663 kcal Electronic energy + Delta-G solvation = -16847.052264 eV Core-core repulsion = 13832.933662 eV Total energy + Delta-G solvation = -3014.118603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06722 -39.41536 -36.90112 -35.24543 -34.33509 -32.66078 -32.12201 -30.24208 -27.85693 -24.56435 -24.19419 -23.05330 -20.85531 -20.01530 -18.23906 -17.47161 -17.20597 -16.48197 -16.14767 -15.48393 -14.73181 -14.67976 -14.48513 -13.94694 -13.71336 -13.44307 -12.84157 -12.35912 -12.14127 -11.93350 -11.58655 -11.50194 -10.90818 -10.84497 -10.74620 -10.61686 -10.28037 -10.09768 -9.77807 -9.67475 -9.37708 -9.11882 -8.53968 -8.37479 -6.03190 -4.05155 0.55174 0.88086 1.56157 2.51167 2.81486 3.32880 3.36063 3.36803 3.40232 4.14977 4.44041 4.48507 4.55735 4.64124 4.97235 5.21367 5.33017 5.44532 5.50008 5.51840 5.74598 5.85603 6.07596 6.37694 6.58366 6.78671 7.04008 7.11307 7.36746 7.62510 7.74307 7.96174 8.01263 8.39581 9.01538 9.59277 11.08210 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.056403 B = 0.002765 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.304999 B =10125.692010 C =10513.159510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.136 4.136 12 C 0.514 3.486 13 O -0.515 6.515 14 N -0.677 5.677 15 C 0.109 3.891 16 C -0.070 4.070 17 C -0.131 4.131 18 C 0.149 3.851 19 Cl -0.036 7.036 20 N -0.460 5.460 21 C 0.091 3.909 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.416 0.584 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 -21.558 0.907 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.176 4.176 12 C 0.304 3.696 13 O -0.388 6.388 14 N -0.323 5.323 15 C 0.012 3.988 16 C -0.098 4.098 17 C -0.153 4.153 18 C -0.016 4.016 19 Cl -0.008 7.008 20 N -0.170 5.170 21 C -0.069 4.069 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.253 0.747 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.933 -22.046 0.416 22.595 hybrid contribution 0.221 1.390 0.394 1.462 sum 5.155 -20.656 0.810 21.304 Atomic orbital electron populations 1.69937 1.06048 1.26770 1.50907 1.25011 0.94860 0.99279 0.95273 0.86648 0.79586 0.83021 0.78711 1.20205 1.21291 1.20202 1.21209 0.93147 0.90977 1.50583 0.92614 1.19123 0.93905 0.91360 0.97224 1.21488 0.98767 0.91318 1.01874 1.21907 0.97934 0.93369 1.04406 1.21669 0.90852 0.83195 0.73866 1.90683 1.17275 1.84202 1.46688 1.43792 1.10118 1.04669 1.73766 1.18946 0.92547 0.89976 0.97371 1.21846 0.92444 0.98813 0.96682 1.21807 1.01757 0.91852 0.99835 1.21564 0.91043 0.90024 0.98923 1.98397 1.61027 1.44696 1.96676 1.66934 1.02195 1.29102 1.18798 1.22486 0.99393 0.88395 0.96653 0.92932 0.96524 0.96529 0.92519 0.92537 0.88657 0.88689 0.74718 0.82075 0.83394 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -1.91 4.44 -26.74 -0.12 -2.03 16 11 C -0.14 -1.94 5.70 -27.88 -0.16 -2.09 16 12 C 0.51 7.01 7.69 -10.98 -0.08 6.93 16 13 O -0.51 -8.85 13.46 5.55 0.07 -8.78 16 14 N -0.68 -6.66 5.35 -9.76 -0.05 -6.72 16 15 C 0.11 1.17 6.32 -83.53 -0.53 0.65 16 16 C -0.07 -0.80 8.81 -39.10 -0.34 -1.15 16 17 C -0.13 -1.35 9.87 -39.43 -0.39 -1.74 16 18 C 0.15 1.67 7.27 -17.44 -0.13 1.54 16 19 Cl -0.04 -0.36 29.10 -51.86 -1.51 -1.87 16 20 N -0.46 -5.36 10.33 -10.21 -0.11 -5.46 16 21 C 0.09 0.90 11.12 -17.34 -0.19 0.70 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 26 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.42 2.59 8.83 -40.82 -0.36 2.23 16 30 H 0.16 2.01 6.32 -52.49 -0.33 1.68 16 31 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -32.57 299.23 -7.47 -40.04 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -3.61 Total: -2.31 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.49 Total: -10.23 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.58 Total: -37.91 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.57 -7.47 -40.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846798533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.239 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds