Wall clock time and date at job start Mon Mar 30 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48506 * 109.46982 * 239.99481 * 3 2 1 5 5 H 1.48500 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47383 * 119.99916 * 3 2 1 7 7 C 1.37872 * 120.00614 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00358 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47477 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47192 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99861 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00036 * 180.27464 * 12 11 10 15 15 C 1.40003 * 120.00182 * 175.05273 * 14 12 11 16 16 C 1.39304 * 120.47141 * 34.95310 * 15 14 12 17 17 C 1.38460 * 118.37527 * 180.02562 * 16 15 14 18 18 C 1.38430 * 119.22242 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.55581 * 180.02562 * 18 17 16 20 20 N 1.31930 * 120.88339 * 0.02562 * 18 17 16 21 21 C 1.31858 * 121.78140 * 359.70240 * 20 18 17 22 22 H 0.96995 * 120.00511 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46747 * 59.99813 * 9 7 2 24 24 H 1.09005 * 109.47184 * 300.00302 * 9 7 2 25 25 H 1.08997 * 109.47524 * 59.99803 * 10 9 7 26 26 H 1.09005 * 109.47071 * 300.00262 * 10 9 7 27 27 H 1.09004 * 109.47453 * 59.99958 * 11 10 9 28 28 H 1.09000 * 109.46841 * 299.99653 * 11 10 9 29 29 H 0.97005 * 119.99607 * 355.04579 * 14 12 11 30 30 H 1.07997 * 120.80930 * 359.97438 * 16 15 14 31 31 H 1.07995 * 120.39012 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.65817 * 180.28964 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 6 2.4599 -6.1324 0.0018 13 8 3.6523 -5.9107 0.0032 14 7 2.0107 -7.4031 -0.0042 15 6 2.9167 -8.4654 -0.1082 16 6 4.1732 -8.3831 0.4877 17 6 5.0351 -9.4588 0.3571 18 6 4.6238 -10.5717 -0.3559 19 17 5.6972 -11.9256 -0.5245 20 7 3.4269 -10.6173 -0.9091 21 6 2.5746 -9.6166 -0.8037 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8922 26 1 2.8728 -3.6046 -0.8877 27 1 0.8548 -5.0450 -0.8895 28 1 0.8529 -5.0446 0.8905 29 1 1.0597 -7.5816 0.0636 30 1 4.4681 -7.5014 1.0373 31 1 6.0172 -9.4296 0.8056 32 1 1.6017 -9.6924 -1.2664 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846798533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:58 Heat of formation + Delta-G solvation = -44.957918 kcal Electronic energy + Delta-G solvation = -16847.969798 eV Core-core repulsion = 13832.933662 eV Total energy + Delta-G solvation = -3015.036137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97140 -40.41173 -37.71670 -36.35717 -35.96339 -34.10211 -33.38660 -31.28434 -29.44963 -26.11217 -25.09392 -24.23003 -22.27504 -21.33401 -19.19729 -18.48859 -18.22382 -18.09261 -17.35098 -16.66248 -16.45693 -15.62828 -15.51262 -15.09559 -15.02239 -14.42041 -14.25117 -13.82669 -13.62714 -13.18161 -12.92410 -12.60619 -12.51383 -12.44329 -12.36547 -11.81133 -11.53339 -11.48768 -11.31113 -11.14143 -10.91160 -10.52944 -10.50027 -9.38551 -8.19629 -6.29090 -0.28031 0.05402 0.75572 1.40581 1.42531 1.46836 1.50638 1.89685 2.42092 2.54563 3.13851 3.40710 3.61212 3.73253 3.81674 3.98940 4.22011 4.28121 4.51436 4.63168 4.79592 4.90271 4.98432 5.04215 5.11681 5.22229 5.51954 5.56354 5.77744 5.88874 6.26220 6.31201 6.56045 6.86916 7.03350 7.39649 8.91487 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.056403 B = 0.002765 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.304999 B =10125.692010 C =10513.159510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.084 4.084 11 C -0.127 4.127 12 C 0.521 3.479 13 O -0.556 6.556 14 N -0.654 5.654 15 C 0.100 3.900 16 C -0.083 4.083 17 C -0.130 4.130 18 C 0.139 3.861 19 Cl -0.030 7.030 20 N -0.478 5.478 21 C 0.101 3.899 22 H 0.264 0.736 23 H 0.002 0.998 24 H 0.003 0.997 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.436 0.564 30 H 0.149 0.851 31 H 0.166 0.834 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -22.320 0.762 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.123 4.123 11 C -0.166 4.166 12 C 0.311 3.689 13 O -0.433 6.433 14 N -0.302 5.302 15 C 0.002 3.998 16 C -0.111 4.111 17 C -0.151 4.151 18 C -0.025 4.025 19 Cl -0.001 7.001 20 N -0.189 5.189 21 C -0.059 4.059 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.276 0.724 30 H 0.166 0.834 31 H 0.184 0.816 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.696 -22.853 0.275 23.332 hybrid contribution 0.283 1.569 0.439 1.653 sum 4.979 -21.284 0.713 21.870 Atomic orbital electron populations 1.70040 1.07431 1.27820 1.51592 1.25865 0.95785 1.02947 0.94796 0.85611 0.78432 0.78663 0.79025 1.19534 1.20525 1.19440 1.21683 0.93367 0.92892 1.50663 0.93039 1.19020 0.94239 0.92254 0.95689 1.21185 0.97691 0.92853 1.00545 1.21709 0.97629 0.90656 1.06647 1.21393 0.89887 0.84144 0.73517 1.90684 1.18785 1.84933 1.48890 1.43421 1.11141 1.03241 1.72390 1.19035 0.92473 0.90397 0.97910 1.21861 0.93302 0.98768 0.97188 1.21950 1.02376 0.91236 0.99526 1.21755 0.91251 0.90467 0.99031 1.98397 1.60790 1.44307 1.96635 1.67003 1.02654 1.29847 1.19412 1.22947 1.00181 0.87223 0.95538 0.92689 0.97970 0.97864 0.93737 0.94020 0.86542 0.86383 0.72354 0.83384 0.81645 0.78258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.29 21.44 0.28 -54.78 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.13 9.11 25.60 0.23 -30.89 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.03 1.25 4.97 29.85 0.15 1.40 16 10 C -0.08 -3.36 4.44 30.59 0.14 -3.23 16 11 C -0.13 -3.40 5.70 29.85 0.17 -3.23 16 12 C 0.52 13.45 7.69 87.66 0.67 14.13 16 13 O -0.56 -18.99 13.46 -3.05 -0.04 -19.03 16 14 N -0.65 -11.35 5.35 -303.18 -1.62 -12.97 16 15 C 0.10 1.95 6.32 38.22 0.24 2.19 16 16 C -0.08 -1.84 8.81 22.58 0.20 -1.65 16 17 C -0.13 -2.54 9.87 22.37 0.22 -2.32 16 18 C 0.14 2.92 7.27 84.72 0.62 3.54 16 19 Cl -0.03 -0.56 29.10 -2.72 -0.08 -0.64 16 20 N -0.48 -10.26 10.33 -186.21 -1.92 -12.18 16 21 C 0.10 1.74 11.12 84.82 0.94 2.68 16 22 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 23 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 24 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 25 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 26 H 0.04 1.75 8.10 -2.38 -0.02 1.73 16 27 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.44 3.97 8.83 -92.70 -0.82 3.16 16 30 H 0.15 3.72 6.32 -2.91 -0.02 3.70 16 31 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -70.48 299.23 3.02 -67.46 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 0.33 Total: 2.63 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.04 Total: -16.67 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -3.26 Total: -79.94 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.04 Total: -19.03 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -70.48 3.02 -67.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846798533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.506 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds