Wall clock time and date at job start Mon Mar 30 2020 07:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46609 * 2 1 4 4 C 1.50699 * 109.46916 * 240.00270 * 2 1 3 5 5 H 1.07997 * 119.99983 * 239.99643 * 4 2 1 6 6 C 1.37883 * 120.00079 * 59.99914 * 4 2 1 7 7 N 1.31515 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47343 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47138 * 120.00089 * 8 6 4 11 11 H 1.48504 * 109.47185 * 239.99932 * 8 6 4 12 12 C 1.50699 * 109.46962 * 120.00024 * 2 1 3 13 13 O 1.21292 * 119.99566 * 98.59738 * 12 2 1 14 14 N 1.34774 * 120.00313 * 278.59270 * 12 2 1 15 15 C 1.46507 * 119.99806 * 3.07803 * 14 12 2 16 16 C 1.39999 * 119.99864 * 183.07139 * 14 12 2 17 17 C 1.39308 * 120.46909 * 173.60262 * 16 14 12 18 18 C 1.38458 * 118.37416 * 179.97438 * 17 16 14 19 19 C 1.38420 * 119.22704 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.56132 * 179.97438 * 19 18 17 21 21 N 1.31937 * 120.88600 * 0.02562 * 19 18 17 22 22 C 1.31862 * 121.77710 * 359.97438 * 21 19 18 23 23 H 1.09005 * 109.47502 * 52.41295 * 1 2 3 24 24 H 1.09002 * 109.47445 * 172.41587 * 1 2 3 25 25 H 1.09002 * 109.47205 * 292.41371 * 1 2 3 26 26 H 0.97001 * 120.00010 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46674 * 268.41924 * 15 14 12 28 28 H 1.09001 * 109.46986 * 28.41411 * 15 14 12 29 29 H 1.08995 * 109.47044 * 148.41635 * 15 14 12 30 30 H 1.08001 * 120.81048 * 359.96225 * 17 16 14 31 31 H 1.08002 * 120.38236 * 180.02562 * 18 17 16 32 32 H 1.07991 * 119.66074 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1483 -2.2854 -3.6039 10 1 1.1676 -1.5864 -4.8166 11 1 3.1471 -0.1855 -4.8161 12 6 2.0323 -0.7104 1.2305 13 8 2.3825 -1.8696 1.1609 14 7 2.0925 -0.0578 2.4081 15 6 1.6068 1.3209 2.5072 16 6 2.6191 -0.6973 3.5367 17 6 2.8092 0.0071 4.7234 18 6 3.3323 -0.6683 5.8130 19 6 3.6473 -2.0105 5.6885 20 17 4.3043 -2.8657 7.0489 21 7 3.4559 -2.6483 4.5496 22 6 2.9601 -2.0418 3.4888 23 1 -0.3634 0.6269 -0.8144 24 1 -0.3634 -1.0187 -0.1356 25 1 -0.3634 0.3918 0.9500 26 1 0.7086 1.1614 -3.4844 27 1 2.4297 2.0104 2.3189 28 1 0.8209 1.4831 1.7695 29 1 1.2084 1.4948 3.5067 30 1 2.5550 1.0546 4.7918 31 1 3.4927 -0.1540 6.7490 32 1 2.8180 -2.5969 2.5735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857614567.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:39 Heat of formation + Delta-G solvation = 8.516292 kcal Electronic energy + Delta-G solvation = -18002.497927 eV Core-core repulsion = 14989.780606 eV Total energy + Delta-G solvation = -3012.717321 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84424 -38.96517 -36.54772 -35.56729 -34.10284 -32.19493 -31.17510 -29.54067 -26.96295 -25.36752 -24.09187 -23.44505 -21.79409 -19.31096 -17.52580 -17.30353 -16.75602 -16.06477 -15.55617 -15.11232 -14.50892 -14.23226 -14.06968 -13.43601 -13.25030 -13.14850 -12.71709 -12.62657 -12.10411 -11.77927 -11.49999 -11.25014 -11.11708 -10.90776 -10.75868 -10.48100 -10.32899 -10.13091 -9.61588 -9.54397 -9.16300 -8.72871 -8.49105 -7.82453 -6.19097 -4.22963 1.05427 1.21408 1.93103 3.05821 3.18286 3.25111 3.33244 3.41768 3.85250 4.34992 4.63327 4.80718 4.90118 4.99206 5.13900 5.15656 5.41732 5.51168 5.75643 5.78305 5.91146 6.05070 6.22997 6.45258 6.61572 6.73229 7.06424 7.21150 7.48155 7.62645 7.84923 7.91271 8.08009 8.69588 8.84627 9.43154 10.88983 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.036697 B = 0.004413 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.816375 B = 6343.308672 C = 6905.915463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.036 3.964 3 H 0.055 0.945 4 C -0.508 4.508 5 H 0.074 0.926 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.524 3.476 13 O -0.509 6.509 14 N -0.560 5.560 15 C 0.066 3.934 16 C 0.123 3.877 17 C -0.122 4.122 18 C -0.129 4.129 19 C 0.128 3.872 20 Cl -0.050 7.050 21 N -0.454 5.454 22 C 0.068 3.932 23 H 0.094 0.906 24 H 0.040 0.960 25 H 0.015 0.985 26 H 0.263 0.737 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 2.937 14.413 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.015 3.985 3 H 0.072 0.928 4 C -0.546 4.546 5 H 0.092 0.908 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.729 3.271 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.318 3.682 13 O -0.384 6.384 14 N -0.283 5.283 15 C -0.077 4.077 16 C 0.023 3.977 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.037 4.037 20 Cl -0.022 7.022 21 N -0.164 5.164 22 C -0.092 4.092 23 H 0.113 0.887 24 H 0.060 0.940 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.506 1.518 14.177 14.337 hybrid contribution 0.160 0.627 -0.422 0.772 sum 1.666 2.145 13.755 14.020 Atomic orbital electron populations 1.21804 0.95610 1.01856 0.99725 1.18957 0.94509 0.96874 0.88152 0.92755 1.21084 1.31842 1.12909 0.88779 0.90802 1.24921 0.94828 0.94949 0.99181 1.69873 1.36642 1.22874 1.23811 0.86363 0.78728 0.79790 0.82225 1.19443 1.20862 1.20951 1.22634 0.74915 0.86929 0.83742 1.90132 1.47057 1.17798 1.83439 1.46091 1.59010 1.15213 1.07937 1.22143 1.01082 0.80777 1.03653 1.19459 0.96302 0.93789 0.88152 1.21239 1.01647 1.00726 0.91455 1.21516 1.00484 0.93009 0.99987 1.21599 1.02020 0.89844 0.90192 1.98365 1.84302 1.78888 1.40636 1.67300 1.11632 1.39138 0.98375 1.25070 0.94691 0.91522 0.97875 0.88719 0.94049 0.96656 0.92768 0.91575 0.88268 0.91023 0.83705 0.84005 0.76369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.48 37.16 0.31 -2.49 16 2 C 0.04 0.82 1.79 -92.92 -0.17 0.65 16 3 H 0.05 1.23 7.24 -51.93 -0.38 0.86 16 4 C -0.51 -13.43 8.33 -34.44 -0.29 -13.71 16 5 H 0.07 2.06 6.96 -52.49 -0.37 1.70 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.53 11.41 55.43 0.63 -22.90 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 C 0.52 11.01 6.76 -10.99 -0.07 10.93 16 13 O -0.51 -11.92 12.15 5.55 0.07 -11.85 16 14 N -0.56 -9.42 3.10 -120.69 -0.37 -9.79 16 15 C 0.07 0.82 9.15 59.85 0.55 1.37 16 16 C 0.12 1.99 6.51 -83.52 -0.54 1.45 16 17 C -0.12 -1.54 9.26 -39.10 -0.36 -1.91 16 18 C -0.13 -1.58 9.87 -39.43 -0.39 -1.97 16 19 C 0.13 1.91 7.27 -17.44 -0.13 1.79 16 20 Cl -0.05 -0.65 29.10 -51.86 -1.51 -2.16 16 21 N -0.45 -8.02 10.33 -10.21 -0.11 -8.13 16 22 C 0.07 1.25 10.22 -17.33 -0.18 1.07 16 23 H 0.09 2.18 6.31 -51.93 -0.33 1.86 16 24 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 25 H 0.01 0.26 6.43 -51.93 -0.33 -0.07 16 26 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.32 4.83 -51.93 -0.25 1.06 16 29 H 0.07 0.67 6.63 -51.93 -0.34 0.33 16 30 H 0.15 1.35 6.50 -52.49 -0.34 1.01 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.22 4.50 4.55 -55.99 -0.25 4.25 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -28.75 281.99 -6.42 -35.16 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.00 Total: 0.92 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.36 Total: -1.27 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.15 Total: -40.82 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.51 Total: -2.16 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.75 -6.42 -35.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857614567.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.678 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds