Wall clock time and date at job start Mon Mar 30 2020 07:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.33865 * 124.51350 * 89.72404 * 3 2 1 5 5 C 1.37417 * 115.10722 * 179.78519 * 4 3 2 6 6 C 1.36752 * 113.28529 * 0.49700 * 5 4 3 7 7 C 1.46397 * 125.46003 * 179.75425 * 6 5 4 8 8 O 1.21629 * 119.99750 * 0.02562 * 7 6 5 9 9 O 1.34889 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.45206 * 117.00362 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47195 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47129 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00000 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99713 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47261 * 89.99773 * 17 15 13 19 19 H 1.48501 * 109.47216 * 209.99993 * 17 15 13 20 20 H 1.48503 * 109.47087 * 330.00030 * 17 15 13 21 21 S 1.70609 * 124.52201 * 270.02856 * 3 2 1 22 22 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 23 23 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 26 26 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 27 27 H 1.07999 * 122.44873 * 359.97438 * 4 3 2 28 28 H 1.07994 * 123.35406 * 180.26554 * 5 4 3 29 29 H 1.09005 * 109.46747 * 300.00511 * 10 9 7 30 30 H 1.08997 * 109.46561 * 60.00147 * 10 9 7 31 31 H 1.08999 * 109.47340 * 300.00197 * 11 10 9 32 32 H 1.09006 * 109.47323 * 60.00394 * 11 10 9 33 33 H 1.09005 * 109.46767 * 299.99961 * 12 11 10 34 34 H 1.08997 * 109.46744 * 59.99722 * 12 11 10 35 35 H 0.97001 * 120.00045 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2802 2.1377 1.1030 5 6 2.7376 3.4139 0.8785 6 6 2.8463 3.7234 -0.4491 7 6 3.3002 5.0069 -0.9876 8 8 3.6190 5.9048 -0.2317 9 8 3.3659 5.1931 -2.3219 10 6 3.8254 6.4905 -2.7847 11 6 3.8324 6.5133 -4.3144 12 6 4.3172 7.8801 -4.8020 13 6 4.3246 7.9023 -6.3088 14 1 4.0142 7.0290 -6.8632 15 6 4.7278 9.0375 -6.9795 16 7 5.1053 10.1011 -6.3043 17 14 4.7364 9.0653 -8.8472 18 1 3.4195 9.5416 -9.3413 19 1 5.8044 9.9805 -9.3238 20 1 4.9921 7.6958 -9.3615 21 16 2.3540 2.3326 -1.4057 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.1344 1.7409 2.0969 28 1 2.9829 4.1048 1.6714 29 1 3.1562 7.2667 -2.4131 30 1 4.8340 6.6722 -2.4136 31 1 4.5012 5.7371 -4.6863 32 1 2.8235 6.3318 -4.6851 33 1 3.6486 8.6566 -4.4301 34 1 5.3260 8.0612 -4.4312 35 1 5.3892 10.8996 -6.7761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914623778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:44 Heat of formation + Delta-G solvation = -82.386269 kcal Electronic energy + Delta-G solvation = -16945.207642 eV Core-core repulsion = 14034.132540 eV Total energy + Delta-G solvation = -2911.075102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.12583 -38.33604 -36.34860 -34.11176 -33.96223 -31.72131 -29.38157 -27.14683 -25.62932 -23.46054 -22.67095 -21.80434 -20.38355 -19.14018 -18.27145 -16.74612 -16.29890 -16.22098 -16.07831 -14.98404 -14.51401 -14.46700 -14.22173 -13.87476 -13.30943 -13.07678 -12.62977 -12.39730 -12.20204 -12.00779 -11.97435 -11.79720 -11.48601 -10.99719 -10.97107 -10.68698 -10.64038 -10.45992 -10.39715 -9.72608 -9.52061 -9.16411 -8.95771 -8.79629 -8.38477 -6.03236 -4.06263 0.21618 1.24391 1.71820 2.08817 2.83263 2.93771 3.31383 3.37514 3.41103 4.28677 4.43768 4.62223 4.84900 4.91843 4.97695 5.12027 5.29997 5.32752 5.42674 5.50744 5.57916 5.61469 5.74295 5.77480 5.87881 6.01824 6.09630 6.45674 6.53979 6.81323 6.97846 7.60550 7.71529 7.86104 7.95137 8.36144 8.99982 9.57967 11.08260 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.035978 B = 0.003060 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.070693 B = 9148.490600 C = 9816.215198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.201 4.201 4 C -0.158 4.158 5 C -0.047 4.047 6 C -0.259 4.259 7 C 0.534 3.466 8 O -0.503 6.503 9 O -0.355 6.355 10 C 0.070 3.930 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 S 0.256 5.744 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 -20.605 14.355 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 C -0.321 4.321 4 C -0.189 4.189 5 C -0.081 4.081 6 C -0.378 4.378 7 C 0.377 3.623 8 O -0.393 6.393 9 O -0.272 6.272 10 C -0.003 4.003 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 S 0.526 5.474 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.754 -20.420 12.930 25.382 hybrid contribution 0.229 0.646 0.707 0.985 sum -7.524 -19.774 13.637 25.171 Atomic orbital electron populations 1.21815 0.93954 1.02241 1.02743 1.20167 0.96444 0.89276 1.03632 1.24545 1.06399 1.02325 0.98803 1.19882 1.05350 0.93971 0.99677 1.20754 0.96189 0.96399 0.94710 1.23676 1.17945 0.98400 0.97736 1.19622 0.74922 0.86048 0.81690 1.90879 1.45810 1.42979 1.59626 1.86580 1.78097 1.40134 1.22397 1.23560 0.99533 0.79730 0.97445 1.21778 1.02044 1.02123 0.88711 1.19053 0.96680 0.89390 0.96177 1.21171 1.44441 0.99014 0.91343 0.92408 1.25034 0.95241 0.95601 0.98609 1.69965 1.44584 1.03303 1.35519 0.86541 0.77716 0.77963 0.85482 1.20612 1.21192 1.19792 1.83417 1.57551 1.00773 1.05631 0.92149 0.92210 0.91811 0.89776 0.90437 0.83810 0.82846 0.91307 0.91297 0.92074 0.92078 0.96199 0.96186 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.06 -0.34 6.36 -27.88 -0.18 -0.52 16 3 C -0.20 -1.75 5.53 -35.85 -0.20 -1.95 16 4 C -0.16 -1.42 9.99 -41.42 -0.41 -1.83 16 5 C -0.05 -0.53 10.01 -40.42 -0.40 -0.94 16 6 C -0.26 -3.49 6.45 -36.84 -0.24 -3.73 16 7 C 0.53 9.02 7.92 34.01 0.27 9.29 16 8 O -0.50 -9.63 16.64 -19.36 -0.32 -9.95 16 9 O -0.36 -6.30 10.08 -41.01 -0.41 -6.72 16 10 C 0.07 1.34 5.48 37.15 0.20 1.54 16 11 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 17 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 S 0.26 2.75 22.87 -107.50 -2.46 0.29 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -31.72 322.17 -8.95 -40.67 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -5.04 Total: -5.43 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.29 Total: -14.10 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.74 Total: -16.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.46 Total: 0.29 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.72 -8.95 -40.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914623778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.716 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds