Wall clock time and date at job start Mon Mar 30 2020 07:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.33865 * 124.51350 * 89.72404 * 3 2 1 5 5 C 1.37417 * 115.10722 * 179.78519 * 4 3 2 6 6 C 1.36752 * 113.28529 * 0.49700 * 5 4 3 7 7 C 1.46397 * 125.46003 * 179.75425 * 6 5 4 8 8 O 1.21629 * 119.99750 * 0.02562 * 7 6 5 9 9 O 1.34889 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.45206 * 117.00362 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47195 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47129 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00000 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99713 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47261 * 89.99773 * 17 15 13 19 19 H 1.48501 * 109.47216 * 209.99993 * 17 15 13 20 20 H 1.48503 * 109.47087 * 330.00030 * 17 15 13 21 21 S 1.70609 * 124.52201 * 270.02856 * 3 2 1 22 22 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 23 23 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 26 26 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 27 27 H 1.07999 * 122.44873 * 359.97438 * 4 3 2 28 28 H 1.07994 * 123.35406 * 180.26554 * 5 4 3 29 29 H 1.09005 * 109.46747 * 300.00511 * 10 9 7 30 30 H 1.08997 * 109.46561 * 60.00147 * 10 9 7 31 31 H 1.08999 * 109.47340 * 300.00197 * 11 10 9 32 32 H 1.09006 * 109.47323 * 60.00394 * 11 10 9 33 33 H 1.09005 * 109.46767 * 299.99961 * 12 11 10 34 34 H 1.08997 * 109.46744 * 59.99722 * 12 11 10 35 35 H 0.97001 * 120.00045 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2802 2.1377 1.1030 5 6 2.7376 3.4139 0.8785 6 6 2.8463 3.7234 -0.4491 7 6 3.3002 5.0069 -0.9876 8 8 3.6190 5.9048 -0.2317 9 8 3.3659 5.1931 -2.3219 10 6 3.8254 6.4905 -2.7847 11 6 3.8324 6.5133 -4.3144 12 6 4.3172 7.8801 -4.8020 13 6 4.3246 7.9023 -6.3088 14 1 4.0142 7.0290 -6.8632 15 6 4.7278 9.0375 -6.9795 16 7 5.1053 10.1011 -6.3043 17 14 4.7364 9.0653 -8.8472 18 1 3.4195 9.5416 -9.3413 19 1 5.8044 9.9805 -9.3238 20 1 4.9921 7.6958 -9.3615 21 16 2.3540 2.3326 -1.4057 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.1344 1.7409 2.0969 28 1 2.9829 4.1048 1.6714 29 1 3.1562 7.2667 -2.4131 30 1 4.8340 6.6722 -2.4136 31 1 4.5012 5.7371 -4.6863 32 1 2.8235 6.3318 -4.6851 33 1 3.6486 8.6566 -4.4301 34 1 5.3260 8.0612 -4.4312 35 1 5.3892 10.8996 -6.7761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914623778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:42 Heat of formation + Delta-G solvation = -98.920139 kcal Electronic energy + Delta-G solvation = -16945.924605 eV Core-core repulsion = 14034.132540 eV Total energy + Delta-G solvation = -2911.792064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47130 -39.18828 -37.76075 -35.95686 -34.72679 -33.70587 -30.35081 -28.88684 -26.60870 -25.14631 -23.36927 -22.98604 -22.20801 -20.16824 -19.39227 -18.58165 -17.75264 -17.64347 -17.08723 -16.49654 -15.83469 -15.74998 -15.05611 -14.86689 -14.49164 -14.15017 -13.97220 -13.84058 -13.77146 -13.34077 -12.90488 -12.81763 -12.53196 -12.52687 -12.35842 -12.13440 -12.09323 -11.88312 -11.65103 -11.50622 -11.47020 -11.26383 -10.58207 -9.80298 -9.61539 -8.22572 -6.34307 -0.70536 0.38805 0.90352 1.14485 1.40913 1.42939 1.50843 1.55370 1.84977 2.41061 3.11345 3.61963 3.71292 3.95372 4.01028 4.11607 4.26520 4.36010 4.40957 4.43786 4.74652 4.76144 4.80745 4.89957 5.03547 5.04946 5.09964 5.16891 5.30369 5.34799 5.40519 5.47369 5.61494 5.78659 6.17651 6.51835 6.81398 7.35243 8.89803 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.035978 B = 0.003060 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.070693 B = 9148.490600 C = 9816.215198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.176 4.176 4 C -0.164 4.164 5 C -0.032 4.032 6 C -0.306 4.306 7 C 0.533 3.467 8 O -0.537 6.537 9 O -0.356 6.356 10 C 0.079 3.921 11 C -0.093 4.093 12 C 0.027 3.973 13 C -0.544 4.544 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.261 1.261 21 S 0.254 5.746 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H -0.003 1.003 34 H -0.003 1.003 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 -23.319 14.369 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.097 4.097 3 C -0.296 4.296 4 C -0.193 4.193 5 C -0.067 4.067 6 C -0.424 4.424 7 C 0.379 3.621 8 O -0.429 6.429 9 O -0.272 6.272 10 C 0.006 3.994 11 C -0.131 4.131 12 C -0.011 4.011 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.185 1.185 21 S 0.524 5.476 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.124 0.876 26 H 0.105 0.895 27 H 0.193 0.807 28 H 0.174 0.826 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.680 -23.159 12.944 27.915 hybrid contribution 0.466 1.369 0.814 1.659 sum -8.213 -21.791 13.759 27.048 Atomic orbital electron populations 1.21826 0.93366 1.03259 1.02306 1.20362 0.96780 0.87388 1.05190 1.24996 1.03831 1.03206 0.97614 1.20136 1.05054 0.92863 1.01238 1.21035 0.94404 0.97369 0.93901 1.23540 1.21686 0.98068 0.99064 1.20179 0.74052 0.87077 0.80800 1.90849 1.47730 1.44450 1.59904 1.86556 1.78250 1.38916 1.23518 1.23216 0.99389 0.80633 0.96191 1.21470 1.02240 0.99321 0.90030 1.18930 0.95019 0.91522 0.95597 1.21618 1.44445 0.99497 0.92581 0.91610 1.26027 0.94609 0.95094 1.04222 1.70102 1.45454 1.04060 1.37804 0.85371 0.78001 0.78514 0.78712 1.19688 1.20783 1.18483 1.83390 1.57606 1.00014 1.06563 0.92153 0.93141 0.90136 0.87599 0.89516 0.80696 0.82569 0.91688 0.91676 0.91375 0.91360 0.98442 0.98432 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.90 71.98 0.71 -0.47 16 2 C -0.06 -0.49 6.36 29.85 0.19 -0.30 16 3 C -0.18 -2.58 5.53 24.69 0.14 -2.44 16 4 C -0.16 -2.47 9.99 21.08 0.21 -2.26 16 5 C -0.03 -0.69 10.01 21.73 0.22 -0.47 16 6 C -0.31 -8.16 6.45 24.05 0.16 -8.00 16 7 C 0.53 18.44 7.92 69.95 0.55 19.00 16 8 O -0.54 -21.29 16.64 19.41 0.32 -20.97 16 9 O -0.36 -12.85 10.08 -58.03 -0.58 -13.43 16 10 C 0.08 3.10 5.48 71.98 0.39 3.50 16 11 C -0.09 -3.97 5.53 30.59 0.17 -3.81 16 12 C 0.03 1.42 4.97 29.85 0.15 1.57 16 13 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 14 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 17 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 S 0.25 5.15 22.87 -56.49 -1.29 3.86 16 22 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 28 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 33 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -69.21 322.17 5.41 -63.80 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: 1.07 Total: 1.70 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.58 Total: -24.17 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.26 Total: -34.40 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.29 Total: 3.86 kcal Total: -69.21 5.41 -63.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914623778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.123 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds