Wall clock time and date at job start Mon Mar 30 2020 08:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47223 * 265.00174 * 3 2 1 5 5 H 1.48498 * 109.47207 * 25.00220 * 3 2 1 6 6 H 1.48496 * 109.47492 * 145.00123 * 3 2 1 7 7 C 1.40136 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00335 * 185.09358 * 7 2 1 9 9 C 1.40184 * 119.99948 * 5.09268 * 7 2 1 10 10 O 1.22042 * 119.99946 * 5.09174 * 9 7 2 11 11 N 1.34768 * 120.00271 * 185.09824 * 9 7 2 12 12 N 1.40104 * 120.00146 * 179.97438 * 11 9 7 13 13 C 1.30971 * 119.99674 * 179.97438 * 12 11 9 14 14 C 1.46186 * 119.99654 * 180.02562 * 13 12 11 15 15 C 1.39927 * 120.67380 * 174.57654 * 14 13 12 16 16 C 1.38341 * 120.50716 * 180.02562 * 15 14 13 17 17 C 1.37607 * 121.72827 * 359.93022 * 16 15 14 18 18 C 1.40571 * 120.67367 * 0.04410 * 17 16 15 19 19 C 1.40540 * 121.24857 * 179.97438 * 18 17 16 20 20 C 1.36407 * 119.62823 * 180.02562 * 19 18 17 21 21 C 1.39062 * 120.95115 * 0.02562 * 20 19 18 22 22 C 1.36676 * 120.87825 * 359.97438 * 21 20 19 23 23 C 1.39725 * 119.65520 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99866 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00245 * 359.97438 * 11 9 7 26 26 H 1.08003 * 120.00410 * 0.02562 * 13 12 11 27 27 H 1.08004 * 119.74851 * 0.02562 * 15 14 13 28 28 H 1.07994 * 119.13750 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.65763 * 180.32667 * 17 16 15 30 30 H 1.07995 * 120.18050 * 0.02562 * 19 18 17 31 31 H 1.07991 * 119.52245 * 179.97438 * 20 19 18 32 32 H 1.07992 * 119.56411 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.17352 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5936 1.9854 -1.3947 5 1 1.3891 2.6808 0.5917 6 1 3.4812 1.4730 0.8030 7 6 2.0072 -1.2136 -0.0005 8 1 3.0840 -1.2155 0.0825 9 6 1.3104 -2.4252 -0.1089 10 8 0.1044 -2.4210 -0.2959 11 7 1.9723 -3.5947 -0.0063 12 7 1.2758 -4.8056 -0.1140 13 6 1.9192 -5.9420 -0.0148 14 6 1.1926 -7.2055 -0.1278 15 6 1.8785 -8.4251 -0.1371 16 6 1.1875 -9.6187 -0.2447 17 6 -0.1845 -9.6541 -0.3441 18 6 -0.9347 -8.4654 -0.3403 19 6 -2.3363 -8.4874 -0.4417 20 6 -3.0315 -7.3138 -0.4352 21 6 -2.3733 -6.0933 -0.3301 22 6 -1.0114 -6.0371 -0.2299 23 6 -0.2685 -7.2205 -0.2335 24 1 -0.4850 0.8400 0.0004 25 1 2.9309 -3.5981 0.1421 26 1 2.9865 -5.9458 0.1504 27 1 2.9558 -8.4347 -0.0598 28 1 1.7392 -10.5471 -0.2501 29 1 -0.6904 -10.6053 -0.4212 30 1 -2.8599 -9.4284 -0.5242 31 1 -4.1084 -7.3328 -0.5136 32 1 -2.9459 -5.1777 -0.3276 33 1 -0.5120 -5.0829 -0.1484 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084562030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:15:52 Heat of formation + Delta-G solvation = 52.182834 kcal Electronic energy + Delta-G solvation = -18756.654413 eV Core-core repulsion = 15748.263465 eV Total energy + Delta-G solvation = -3008.390948 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79831 -37.71281 -36.16838 -35.29381 -32.90014 -32.35044 -30.30607 -29.92329 -28.69745 -26.61261 -23.84559 -22.53750 -22.30543 -20.35374 -19.88260 -17.65341 -17.24055 -16.61521 -15.97811 -15.60787 -15.41248 -14.58098 -13.98889 -13.88588 -13.56441 -13.16830 -13.06098 -12.81015 -12.71404 -12.39903 -11.73383 -11.59125 -11.43443 -11.15269 -10.95456 -10.81735 -10.68851 -10.61343 -10.42320 -9.52480 -9.14169 -9.02671 -8.36114 -8.01346 -7.84033 -7.03343 -6.47817 -5.01387 0.54669 1.33877 2.05993 2.83469 3.02671 3.07874 3.11278 3.45509 3.62412 4.03455 4.36718 4.48773 4.80940 4.92838 5.08477 5.27182 5.33836 5.39463 5.58242 5.68247 5.69560 5.75860 5.85618 6.07480 6.25651 6.37714 6.44335 6.53306 6.68370 6.72337 6.89519 7.13887 7.15325 7.22362 7.46581 7.80892 7.92776 8.54701 8.70296 9.20997 10.32171 10.55965 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.030913 B = 0.004343 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.557319 B = 6446.173387 C = 7338.604142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.089 3.911 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.557 3.443 10 O -0.556 6.556 11 N -0.587 5.587 12 N -0.184 5.184 13 C 0.017 3.983 14 C -0.002 4.002 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.050 4.050 19 C -0.130 4.130 20 C -0.110 4.110 21 C -0.129 4.129 22 C -0.097 4.097 23 C -0.044 4.044 24 H 0.276 0.724 25 H 0.370 0.630 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -14.413 0.197 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.436 6.436 11 N -0.333 5.333 12 N 0.006 4.994 13 C -0.190 4.190 14 C -0.004 4.004 15 C -0.139 4.139 16 C -0.133 4.133 17 C -0.135 4.135 18 C -0.050 4.050 19 C -0.148 4.148 20 C -0.128 4.128 21 C -0.147 4.147 22 C -0.114 4.114 23 C -0.045 4.045 24 H 0.087 0.913 25 H 0.206 0.794 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.053 -13.599 -0.057 13.599 hybrid contribution 1.803 0.457 0.205 1.871 sum 1.750 -13.142 0.149 13.259 Atomic orbital electron populations 1.69999 1.07386 1.28264 1.31261 1.25749 0.94675 1.00721 0.92339 0.86217 0.80010 0.80296 0.79345 1.19279 1.20153 1.18694 1.19628 0.94901 0.89830 1.52836 0.91048 1.16674 0.87703 0.80292 0.78726 1.90735 1.14345 1.85269 1.53222 1.48250 1.09205 1.01948 1.73875 1.74678 1.26236 0.93292 1.05198 1.23913 0.97155 0.90406 1.07501 1.19661 0.91158 0.91149 0.98475 1.21149 0.99467 0.91053 1.02203 1.20748 0.94164 0.97540 1.00889 1.21255 0.93998 0.96800 1.01414 1.18010 0.93601 0.92731 1.00675 1.20924 0.92678 0.98141 1.03039 1.20913 0.99688 0.92804 0.99379 1.21099 0.95192 0.97655 1.00759 1.22601 0.94246 1.00782 0.93807 1.19094 0.91917 0.93020 1.00469 0.91342 0.79381 0.86892 0.85723 0.86246 0.86203 0.86167 0.86534 0.85908 0.80005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.25 11.74 55.56 0.65 -20.60 16 2 C 0.09 2.37 5.48 -17.34 -0.10 2.27 16 3 Si 0.92 19.01 29.56 -169.99 -5.03 13.98 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.54 -14.48 9.23 -38.14 -0.35 -14.83 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.31 16 9 C 0.56 15.75 7.62 -15.53 -0.12 15.63 16 10 O -0.56 -17.90 15.23 4.88 0.07 -17.82 16 11 N -0.59 -13.66 6.26 28.82 0.18 -13.48 16 12 N -0.18 -4.03 7.26 32.04 0.23 -3.80 16 13 C 0.02 0.30 10.75 -14.73 -0.16 0.14 16 14 C 0.00 -0.04 6.05 -102.75 -0.62 -0.66 16 15 C -0.12 -1.51 9.80 -38.91 -0.38 -1.89 16 16 C -0.12 -1.34 9.93 -39.77 -0.39 -1.74 16 17 C -0.12 -1.45 9.78 -38.93 -0.38 -1.83 16 18 C -0.05 -0.77 5.74 -106.87 -0.61 -1.39 16 19 C -0.13 -1.81 9.78 -39.37 -0.39 -2.19 16 20 C -0.11 -1.61 9.95 -39.94 -0.40 -2.01 16 21 C -0.13 -2.29 9.96 -39.84 -0.40 -2.68 16 22 C -0.10 -1.93 9.24 -39.59 -0.37 -2.30 16 23 C -0.04 -0.79 5.90 -104.73 -0.62 -1.40 16 24 H 0.28 7.07 8.29 -40.82 -0.34 6.74 16 25 H 0.37 7.21 8.62 -182.59 -1.57 5.63 16 26 H 0.11 1.59 8.04 -52.48 -0.42 1.17 16 27 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.18 4.29 4.73 -52.69 -0.25 4.04 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -33.59 296.46 -9.02 -42.62 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.33 Total: 9.50 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -5.28 Total: -14.88 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 1.07 Total: -37.87 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.07 Total: -17.82 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.59 -9.02 -42.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084562030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.801 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds