Wall clock time and date at job start Mon Mar 30 2020 08:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47223 * 265.00174 * 3 2 1 5 5 H 1.48498 * 109.47207 * 25.00220 * 3 2 1 6 6 H 1.48496 * 109.47492 * 145.00123 * 3 2 1 7 7 C 1.40136 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00335 * 185.09358 * 7 2 1 9 9 C 1.40184 * 119.99948 * 5.09268 * 7 2 1 10 10 O 1.22042 * 119.99946 * 5.09174 * 9 7 2 11 11 N 1.34768 * 120.00271 * 185.09824 * 9 7 2 12 12 N 1.40104 * 120.00146 * 179.97438 * 11 9 7 13 13 C 1.30971 * 119.99674 * 179.97438 * 12 11 9 14 14 C 1.46186 * 119.99654 * 180.02562 * 13 12 11 15 15 C 1.39927 * 120.67380 * 174.57654 * 14 13 12 16 16 C 1.38341 * 120.50716 * 180.02562 * 15 14 13 17 17 C 1.37607 * 121.72827 * 359.93022 * 16 15 14 18 18 C 1.40571 * 120.67367 * 0.04410 * 17 16 15 19 19 C 1.40540 * 121.24857 * 179.97438 * 18 17 16 20 20 C 1.36407 * 119.62823 * 180.02562 * 19 18 17 21 21 C 1.39062 * 120.95115 * 0.02562 * 20 19 18 22 22 C 1.36676 * 120.87825 * 359.97438 * 21 20 19 23 23 C 1.39725 * 119.65520 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99866 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00245 * 359.97438 * 11 9 7 26 26 H 1.08003 * 120.00410 * 0.02562 * 13 12 11 27 27 H 1.08004 * 119.74851 * 0.02562 * 15 14 13 28 28 H 1.07994 * 119.13750 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.65763 * 180.32667 * 17 16 15 30 30 H 1.07995 * 120.18050 * 0.02562 * 19 18 17 31 31 H 1.07991 * 119.52245 * 179.97438 * 20 19 18 32 32 H 1.07992 * 119.56411 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.17352 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5936 1.9854 -1.3947 5 1 1.3891 2.6808 0.5917 6 1 3.4812 1.4730 0.8030 7 6 2.0072 -1.2136 -0.0005 8 1 3.0840 -1.2155 0.0825 9 6 1.3104 -2.4252 -0.1089 10 8 0.1044 -2.4210 -0.2959 11 7 1.9723 -3.5947 -0.0063 12 7 1.2758 -4.8056 -0.1140 13 6 1.9192 -5.9420 -0.0148 14 6 1.1926 -7.2055 -0.1278 15 6 1.8785 -8.4251 -0.1371 16 6 1.1875 -9.6187 -0.2447 17 6 -0.1845 -9.6541 -0.3441 18 6 -0.9347 -8.4654 -0.3403 19 6 -2.3363 -8.4874 -0.4417 20 6 -3.0315 -7.3138 -0.4352 21 6 -2.3733 -6.0933 -0.3301 22 6 -1.0114 -6.0371 -0.2299 23 6 -0.2685 -7.2205 -0.2335 24 1 -0.4850 0.8400 0.0004 25 1 2.9309 -3.5981 0.1421 26 1 2.9865 -5.9458 0.1504 27 1 2.9558 -8.4347 -0.0598 28 1 1.7392 -10.5471 -0.2501 29 1 -0.6904 -10.6053 -0.4212 30 1 -2.8599 -9.4284 -0.5242 31 1 -4.1084 -7.3328 -0.5136 32 1 -2.9459 -5.1777 -0.3276 33 1 -0.5120 -5.0829 -0.1484 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084562030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:15:49 Heat of formation + Delta-G solvation = 29.711907 kcal Electronic energy + Delta-G solvation = -18757.628825 eV Core-core repulsion = 15748.263465 eV Total energy + Delta-G solvation = -3009.365361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97657 -39.60232 -37.47976 -36.80630 -34.78485 -33.95705 -31.80361 -31.13170 -30.05329 -28.48431 -25.14478 -23.73189 -23.64160 -22.02216 -21.39373 -19.44338 -18.44119 -18.05103 -17.67400 -17.04142 -16.70475 -16.09049 -15.44852 -15.23817 -15.12924 -14.70575 -14.48772 -14.30602 -13.96754 -13.54160 -13.33883 -13.19402 -12.83472 -12.76133 -12.66373 -12.12812 -12.08907 -12.04903 -11.76243 -11.04063 -10.79733 -10.51267 -10.00082 -9.60123 -9.50699 -8.47013 -8.41129 -7.11624 -0.63820 0.18414 0.76993 1.37323 1.38743 1.55596 1.62266 2.03495 2.22862 2.32364 2.42821 3.27413 3.62417 3.63032 3.85423 4.03131 4.11252 4.27142 4.35351 4.42707 4.50513 4.54536 4.68252 4.89289 5.07974 5.15447 5.23660 5.28454 5.32908 5.50402 5.58039 5.69572 5.78439 5.87472 5.99074 6.10755 6.19645 6.65366 6.90602 7.41591 8.38425 8.56002 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.030913 B = 0.004343 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.557319 B = 6446.173387 C = 7338.604142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.032 3.968 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.544 3.456 10 O -0.616 6.616 11 N -0.597 5.597 12 N -0.254 5.254 13 C 0.062 3.938 14 C -0.065 4.065 15 C -0.075 4.075 16 C -0.120 4.120 17 C -0.093 4.093 18 C -0.075 4.075 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.059 4.059 24 H 0.282 0.718 25 H 0.384 0.616 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -18.340 0.213 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.187 4.187 3 Si 0.828 3.172 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.167 1.167 7 C -0.598 4.598 8 H 0.113 0.887 9 C 0.354 3.646 10 O -0.502 6.502 11 N -0.342 5.342 12 N -0.061 5.061 13 C -0.146 4.146 14 C -0.067 4.067 15 C -0.097 4.097 16 C -0.137 4.137 17 C -0.112 4.112 18 C -0.075 4.075 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.159 4.159 22 C -0.164 4.164 23 C -0.060 4.060 24 H 0.092 0.908 25 H 0.222 0.778 26 H 0.166 0.834 27 H 0.179 0.821 28 H 0.185 0.815 29 H 0.180 0.820 30 H 0.184 0.816 31 H 0.165 0.835 32 H 0.124 0.876 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.987 -17.576 -0.031 17.688 hybrid contribution 1.204 1.146 0.200 1.674 sum 3.191 -16.430 0.169 16.738 Atomic orbital electron populations 1.70174 1.10000 1.29871 1.32700 1.27132 0.95511 1.05362 0.90724 0.84861 0.78641 0.73870 0.79877 1.18363 1.19389 1.16738 1.20190 0.96167 0.90290 1.53179 0.88684 1.17052 0.87246 0.82173 0.78153 1.90672 1.16729 1.86766 1.55987 1.47473 1.09456 1.02039 1.75247 1.74970 1.26862 0.93600 1.10688 1.24662 0.98864 0.89989 1.01091 1.19839 0.90966 0.91908 1.03975 1.21710 1.01324 0.89899 0.96770 1.21317 0.94192 0.98671 0.99526 1.21801 0.94624 0.97015 0.97781 1.18424 0.94712 0.92830 1.01520 1.21458 0.92329 0.99351 0.99484 1.21138 1.01234 0.91737 1.00029 1.21175 0.94718 0.98920 1.01132 1.22390 0.95438 1.00639 0.97947 1.19296 0.92991 0.93209 1.00534 0.90795 0.77828 0.83371 0.82080 0.81550 0.82036 0.81644 0.83521 0.87648 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.86 11.74 21.85 0.26 -48.60 16 2 C 0.03 1.74 5.48 85.33 0.47 2.21 16 3 Si 1.01 39.83 29.56 68.60 2.03 41.85 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 6 H -0.24 -8.81 7.11 99.48 0.71 -8.11 16 7 C -0.56 -31.98 9.23 23.20 0.21 -31.77 16 8 H 0.10 4.72 7.85 -2.91 -0.02 4.69 16 9 C 0.54 33.33 7.62 84.72 0.65 33.98 16 10 O -0.62 -43.74 15.23 -5.45 -0.08 -43.82 16 11 N -0.60 -29.94 6.26 -180.81 -1.13 -31.07 16 12 N -0.25 -12.09 7.26 -52.53 -0.38 -12.47 16 13 C 0.06 2.20 10.75 86.89 0.93 3.13 16 14 C -0.06 -2.07 6.05 -18.65 -0.11 -2.19 16 15 C -0.08 -1.60 9.80 22.70 0.22 -1.38 16 16 C -0.12 -2.02 9.93 22.15 0.22 -1.80 16 17 C -0.09 -1.80 9.78 22.69 0.22 -1.58 16 18 C -0.07 -2.11 5.74 -21.32 -0.12 -2.24 16 19 C -0.11 -2.71 9.78 22.40 0.22 -2.49 16 20 C -0.12 -3.60 9.95 22.04 0.22 -3.38 16 21 C -0.14 -5.50 9.96 22.10 0.22 -5.28 16 22 C -0.15 -6.44 9.24 22.26 0.21 -6.23 16 23 C -0.06 -2.16 5.90 -19.94 -0.12 -2.28 16 24 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16 25 H 0.38 15.83 8.62 -213.31 -1.84 13.99 16 26 H 0.15 3.96 8.04 -2.91 -0.02 3.93 16 27 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.15 3.26 8.06 -2.92 -0.02 3.23 16 32 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.14 7.56 4.73 -3.17 -0.01 7.55 16 Total: -1.00 -85.26 296.46 3.44 -81.82 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.69 Total: 33.58 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 3.44 Total: -21.29 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -1.26 Total: -92.14 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.08 Total: -43.82 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Total: -85.26 3.44 -81.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084562030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.531 kcal (2) G-P(sol) polarization free energy of solvation -85.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds