Wall clock time and date at job start Mon Mar 30 2020 07:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38883 * 120.33681 * 2 1 4 4 C 1.38297 * 118.50687 * 180.02562 * 3 2 1 5 5 C 1.39139 * 119.09426 * 0.02562 * 4 3 2 6 6 N 1.39095 * 119.70356 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99786 * 171.88067 * 6 5 4 8 8 C 1.50699 * 109.46863 * 270.00247 * 7 6 5 9 9 H 1.08004 * 120.00487 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99819 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99618 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00017 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.47062 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47161 * 119.99930 * 12 10 8 15 15 H 1.48496 * 109.47287 * 240.00157 * 12 10 8 16 16 C 1.39755 * 119.99783 * 351.88650 * 6 5 4 17 17 C 1.38922 * 120.07236 * 271.23877 * 16 6 5 18 18 C 1.38102 * 119.92441 * 180.02562 * 17 16 6 19 19 C 1.38287 * 120.07427 * 359.97438 * 18 17 16 20 20 C 1.38286 * 120.15008 * 0.27091 * 19 18 17 21 21 C 1.38098 * 120.07619 * 359.49577 * 20 19 18 22 22 N 1.32405 * 120.59317 * 0.25566 * 5 4 3 23 23 C 1.31961 * 121.62127 * 359.47310 * 22 5 4 24 24 H 1.08999 * 109.47241 * 89.99960 * 1 2 3 25 25 H 1.09000 * 109.47374 * 209.99831 * 1 2 3 26 26 H 1.08999 * 109.47246 * 330.00050 * 1 2 3 27 27 H 1.07999 * 120.74462 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.45280 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.46932 * 29.99901 * 7 6 5 30 30 H 1.08999 * 109.46598 * 150.00694 * 7 6 5 31 31 H 0.97003 * 119.99408 * 179.97438 * 11 10 8 32 32 H 1.07997 * 120.03550 * 0.02562 * 17 16 6 33 33 H 1.08001 * 119.96130 * 179.97438 * 18 17 16 34 34 H 1.08008 * 119.92271 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.96273 * 179.72363 * 20 19 18 36 36 H 1.07997 * 120.04016 * 180.22519 * 21 20 19 37 37 H 1.08002 * 119.57520 * 180.25311 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1545 -0.0005 5 6 4.2281 -0.0823 -0.0016 6 7 5.6178 -0.1415 -0.0027 7 6 6.2963 -1.4277 0.1754 8 6 6.5384 -1.6688 1.6431 9 1 6.2193 -0.9371 2.3705 10 6 7.1684 -2.8233 2.0573 11 7 7.5583 -3.7136 1.1714 12 14 7.4693 -3.1219 3.8765 13 1 6.9411 -1.9763 4.6602 14 1 6.7788 -4.3685 4.2944 15 1 8.9276 -3.2579 4.1213 16 6 6.3667 1.0260 -0.1736 17 6 6.7097 1.4524 -1.4505 18 6 7.4504 2.6062 -1.6157 19 6 7.8501 3.3372 -0.5120 20 6 7.5147 2.9128 0.7607 21 6 6.7702 1.7625 0.9330 22 7 3.5237 -1.2034 -0.0072 23 6 2.2041 -1.1915 -0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6862 2.1440 0.0004 28 1 4.1675 2.0675 -0.0001 29 1 5.6723 -2.2262 -0.2259 30 1 7.2498 -1.4115 -0.3524 31 1 8.0019 -4.5256 1.4628 32 1 6.3975 0.8822 -2.3129 33 1 7.7177 2.9381 -2.6081 34 1 8.4289 4.2394 -0.6441 35 1 7.8323 3.4836 1.6209 36 1 6.5055 1.4336 1.9270 37 1 1.6626 -2.1259 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019428538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:01 Heat of formation + Delta-G solvation = 70.594714 kcal Electronic energy + Delta-G solvation = -19683.668062 eV Core-core repulsion = 16811.908608 eV Total energy + Delta-G solvation = -2871.759454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98373 -38.71775 -35.79304 -32.81651 -32.51325 -30.99000 -30.60666 -29.41767 -27.34193 -25.52792 -23.50538 -22.21464 -22.15480 -21.97873 -20.12320 -17.52418 -16.53463 -16.02417 -15.92733 -14.98827 -14.81984 -14.60639 -14.23527 -13.81312 -13.74265 -13.29631 -13.10063 -12.72360 -12.54455 -12.23430 -12.19199 -12.05184 -11.47813 -11.28583 -11.08890 -11.04561 -10.82042 -10.56174 -10.15265 -9.79945 -9.24060 -8.96353 -8.71942 -8.62980 -8.44152 -8.25283 -6.82999 -6.00218 -4.06358 1.61214 1.70777 1.84575 1.98600 3.29558 3.36831 3.40545 3.75307 4.07510 4.43253 4.50241 5.13189 5.20853 5.24443 5.26187 5.31454 5.37291 5.39643 5.49459 5.64887 5.75448 5.80908 5.88620 5.92608 6.01178 6.18367 6.30418 6.33240 6.51439 6.63436 6.77193 6.79251 6.95841 7.00005 7.18811 7.28778 7.51963 7.86668 8.06549 8.26580 8.28026 8.89580 9.02576 9.57458 11.05472 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.008437 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.330777 B = 3317.856056 C = 5167.862867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.226 4.226 3 C -0.038 4.038 4 C -0.244 4.244 5 C 0.420 3.580 6 N -0.560 5.560 7 C 0.257 3.743 8 C -0.521 4.521 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.174 3.826 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.107 4.107 22 N -0.518 5.518 23 C 0.151 3.849 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 12.347 -4.035 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.232 4.232 3 C -0.064 4.064 4 C -0.270 4.270 5 C 0.186 3.814 6 N -0.266 5.266 7 C 0.139 3.861 8 C -0.560 4.560 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.722 3.278 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.210 1.210 16 C 0.082 3.918 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.148 4.148 20 C -0.136 4.136 21 C -0.126 4.126 22 N -0.233 5.233 23 C -0.009 4.009 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.085 11.312 -4.056 13.470 hybrid contribution -0.063 0.439 1.119 1.204 sum -6.149 11.751 -2.937 13.584 Atomic orbital electron populations 1.20462 0.91282 1.01893 1.01234 1.20448 0.96670 0.94261 1.11799 1.21008 0.93124 0.97393 0.94874 1.21383 0.95122 0.97422 1.13035 1.18319 0.85089 0.88670 0.89336 1.44485 1.00491 1.07625 1.74014 1.19376 0.92005 0.77910 0.96768 1.21475 1.37811 1.04427 0.92297 0.92607 1.24899 0.95607 0.95772 0.97689 1.69942 1.40349 1.09767 1.33288 0.86497 0.77753 0.78203 0.85299 1.19897 1.20891 1.20993 1.17473 0.94748 0.87315 0.92252 1.21482 0.99037 0.96783 0.96881 1.20940 0.98860 0.95228 0.98624 1.21074 1.00906 1.00042 0.92731 1.21024 0.98773 0.96675 0.97138 1.21634 0.97457 0.94188 0.99366 1.67293 1.07689 1.29456 1.18835 1.22300 0.88833 0.96933 0.92861 0.92345 0.92117 0.92503 0.86079 0.85941 0.92677 0.95509 0.92833 0.86163 0.86238 0.86438 0.86190 0.85534 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 10.03 36.00 0.36 -0.66 16 2 C -0.23 -3.45 5.90 -104.46 -0.62 -4.07 16 3 C -0.04 -0.59 9.85 -39.32 -0.39 -0.98 16 4 C -0.24 -4.39 9.34 -39.23 -0.37 -4.76 16 5 C 0.42 8.98 7.33 -154.92 -1.14 7.85 16 6 N -0.56 -12.56 2.59 -114.87 -0.30 -12.86 16 7 C 0.26 6.84 5.24 -5.19 -0.03 6.81 16 8 C -0.52 -14.80 9.39 -34.44 -0.32 -15.13 16 9 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C 0.17 3.38 3.55 -83.74 -0.30 3.08 16 17 C -0.12 -2.06 9.97 -39.38 -0.39 -2.45 16 18 C -0.12 -1.64 10.04 -39.61 -0.40 -2.04 16 19 C -0.13 -1.71 10.04 -39.55 -0.40 -2.10 16 20 C -0.12 -1.71 10.04 -39.62 -0.40 -2.11 16 21 C -0.11 -1.93 9.82 -39.38 -0.39 -2.31 16 22 N -0.52 -11.37 9.08 -12.41 -0.11 -11.49 16 23 C 0.15 2.68 10.85 -17.57 -0.19 2.48 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.14 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.12 2.08 6.89 -52.49 -0.36 1.72 16 29 H 0.06 1.59 7.26 -51.93 -0.38 1.22 16 30 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.13 2.43 8.06 -52.49 -0.42 2.00 16 37 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -31.45 321.72 -9.82 -41.28 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.92 Total: 1.83 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -5.05 Total: -14.69 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.33 Total: -50.27 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.45 -9.82 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019428538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.873 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds