Wall clock time and date at job start Mon Mar 30 2020 07:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38883 * 120.33681 * 2 1 4 4 C 1.38297 * 118.50687 * 180.02562 * 3 2 1 5 5 C 1.39139 * 119.09426 * 0.02562 * 4 3 2 6 6 N 1.39095 * 119.70356 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99786 * 171.88067 * 6 5 4 8 8 C 1.50699 * 109.46863 * 270.00247 * 7 6 5 9 9 H 1.08004 * 120.00487 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99819 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99618 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00017 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.47062 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47161 * 119.99930 * 12 10 8 15 15 H 1.48496 * 109.47287 * 240.00157 * 12 10 8 16 16 C 1.39755 * 119.99783 * 351.88650 * 6 5 4 17 17 C 1.38922 * 120.07236 * 271.23877 * 16 6 5 18 18 C 1.38102 * 119.92441 * 180.02562 * 17 16 6 19 19 C 1.38287 * 120.07427 * 359.97438 * 18 17 16 20 20 C 1.38286 * 120.15008 * 0.27091 * 19 18 17 21 21 C 1.38098 * 120.07619 * 359.49577 * 20 19 18 22 22 N 1.32405 * 120.59317 * 0.25566 * 5 4 3 23 23 C 1.31961 * 121.62127 * 359.47310 * 22 5 4 24 24 H 1.08999 * 109.47241 * 89.99960 * 1 2 3 25 25 H 1.09000 * 109.47374 * 209.99831 * 1 2 3 26 26 H 1.08999 * 109.47246 * 330.00050 * 1 2 3 27 27 H 1.07999 * 120.74462 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.45280 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.46932 * 29.99901 * 7 6 5 30 30 H 1.08999 * 109.46598 * 150.00694 * 7 6 5 31 31 H 0.97003 * 119.99408 * 179.97438 * 11 10 8 32 32 H 1.07997 * 120.03550 * 0.02562 * 17 16 6 33 33 H 1.08001 * 119.96130 * 179.97438 * 18 17 16 34 34 H 1.08008 * 119.92271 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.96273 * 179.72363 * 20 19 18 36 36 H 1.07997 * 120.04016 * 180.22519 * 21 20 19 37 37 H 1.08002 * 119.57520 * 180.25311 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1545 -0.0005 5 6 4.2281 -0.0823 -0.0016 6 7 5.6178 -0.1415 -0.0027 7 6 6.2963 -1.4277 0.1754 8 6 6.5384 -1.6688 1.6431 9 1 6.2193 -0.9371 2.3705 10 6 7.1684 -2.8233 2.0573 11 7 7.5583 -3.7136 1.1714 12 14 7.4693 -3.1219 3.8765 13 1 6.9411 -1.9763 4.6602 14 1 6.7788 -4.3685 4.2944 15 1 8.9276 -3.2579 4.1213 16 6 6.3667 1.0260 -0.1736 17 6 6.7097 1.4524 -1.4505 18 6 7.4504 2.6062 -1.6157 19 6 7.8501 3.3372 -0.5120 20 6 7.5147 2.9128 0.7607 21 6 6.7702 1.7625 0.9330 22 7 3.5237 -1.2034 -0.0072 23 6 2.2041 -1.1915 -0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6862 2.1440 0.0004 28 1 4.1675 2.0675 -0.0001 29 1 5.6723 -2.2262 -0.2259 30 1 7.2498 -1.4115 -0.3524 31 1 8.0019 -4.5256 1.4628 32 1 6.3975 0.8822 -2.3129 33 1 7.7177 2.9381 -2.6081 34 1 8.4289 4.2394 -0.6441 35 1 7.8323 3.4836 1.6209 36 1 6.5055 1.4336 1.9270 37 1 1.6626 -2.1259 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019428538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:01 Heat of formation + Delta-G solvation = 54.277769 kcal Electronic energy + Delta-G solvation = -19684.375618 eV Core-core repulsion = 16811.908608 eV Total energy + Delta-G solvation = -2872.467010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40032 -40.00231 -37.28419 -34.86152 -33.90260 -32.37951 -31.82424 -30.89996 -29.04613 -26.94356 -25.24227 -23.63928 -23.43009 -23.39786 -21.53443 -18.90448 -18.65528 -17.60918 -17.24333 -16.55859 -16.26081 -16.05855 -15.72774 -15.10089 -15.06491 -14.76272 -14.44658 -14.29028 -13.88006 -13.62182 -13.43730 -13.30299 -13.12468 -12.95980 -12.67798 -12.52777 -12.31093 -12.23583 -12.09813 -11.67438 -10.65961 -10.61811 -10.59179 -10.14397 -9.85121 -9.57562 -8.49326 -8.08177 -6.35834 0.37270 0.45575 0.49118 0.64179 1.32469 1.33764 1.45944 2.21201 2.39459 2.84793 3.06728 3.07630 3.78646 4.02618 4.06514 4.12200 4.23190 4.28542 4.31520 4.32968 4.58416 4.68189 4.71926 4.78656 4.97907 5.00790 5.08278 5.13221 5.17357 5.21899 5.30851 5.49386 5.54250 5.58929 5.62620 5.72049 5.90478 5.98544 6.07739 6.40077 6.67019 6.76564 7.31603 7.51936 8.85093 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.008437 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.330777 B = 3317.856056 C = 5167.862867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.208 4.208 3 C -0.035 4.035 4 C -0.243 4.243 5 C 0.386 3.614 6 N -0.572 5.572 7 C 0.282 3.718 8 C -0.531 4.531 9 H 0.045 0.955 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.964 3.036 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.271 1.271 16 C 0.140 3.860 17 C -0.138 4.138 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.130 4.130 22 N -0.569 5.569 23 C 0.126 3.874 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.129 0.871 29 H 0.019 0.981 30 H -0.002 1.002 31 H 0.266 0.734 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.101 0.899 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 15.228 -3.614 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.213 4.213 3 C -0.060 4.060 4 C -0.268 4.268 5 C 0.153 3.847 6 N -0.281 5.281 7 C 0.162 3.838 8 C -0.569 4.569 9 H 0.063 0.937 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.788 3.212 13 H -0.195 1.195 14 H -0.202 1.202 15 H -0.197 1.197 16 C 0.050 3.950 17 C -0.158 4.158 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.150 4.150 22 N -0.285 5.285 23 C -0.033 4.033 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.181 0.819 28 H 0.147 0.853 29 H 0.037 0.963 30 H 0.016 0.984 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.167 0.833 36 H 0.119 0.881 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.967 14.220 -3.644 16.249 hybrid contribution 0.095 -0.383 0.909 0.991 sum -6.872 13.837 -2.735 15.690 Atomic orbital electron populations 1.20553 0.87689 1.03489 1.02824 1.20930 0.99056 0.93081 1.08244 1.21509 0.92048 0.99298 0.93157 1.21491 0.96412 0.96216 1.12706 1.18657 0.84748 0.89917 0.91383 1.44203 1.01263 1.07010 1.75579 1.18668 0.90105 0.79763 0.95290 1.21655 1.37838 1.04445 0.93005 0.93655 1.25792 0.95190 0.95378 1.02513 1.70063 1.40979 1.10277 1.35514 0.85425 0.78180 0.78102 0.79446 1.19522 1.20207 1.19652 1.17765 0.96295 0.87174 0.93784 1.21553 1.00311 0.98318 0.95587 1.21351 0.96847 0.93509 1.00825 1.21560 0.99545 1.00759 0.91434 1.21357 0.97161 0.95214 0.99200 1.21569 0.99531 0.96106 0.97796 1.67192 1.09950 1.30927 1.20452 1.22763 0.87855 0.99092 0.93545 0.90575 0.91110 0.90394 0.81872 0.85282 0.96280 0.98409 0.92465 0.87061 0.82704 0.82015 0.83323 0.88085 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 10.03 71.23 0.71 -0.94 16 2 C -0.21 -6.00 5.90 -19.76 -0.12 -6.12 16 3 C -0.03 -1.00 9.85 22.44 0.22 -0.78 16 4 C -0.24 -8.86 9.34 22.50 0.21 -8.65 16 5 C 0.39 17.49 7.33 133.03 0.98 18.46 16 6 N -0.57 -27.74 2.59 -517.34 -1.34 -29.08 16 7 C 0.28 16.32 5.24 85.63 0.45 16.77 16 8 C -0.53 -32.00 9.39 25.60 0.24 -31.76 16 9 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 10 C 0.01 0.59 5.46 84.66 0.46 1.05 16 11 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 12 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 C 0.14 5.76 3.55 38.20 0.14 5.89 16 17 C -0.14 -4.77 9.97 22.40 0.22 -4.54 16 18 C -0.11 -2.73 10.04 22.25 0.22 -2.50 16 19 C -0.12 -2.63 10.04 22.29 0.22 -2.41 16 20 C -0.11 -3.04 10.04 22.25 0.22 -2.81 16 21 C -0.13 -4.85 9.82 22.40 0.22 -4.63 16 22 N -0.57 -26.59 9.08 -193.17 -1.75 -28.34 16 23 C 0.13 4.55 10.85 84.63 0.92 5.47 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 26 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 27 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 28 H 0.13 4.43 6.89 -2.91 -0.02 4.41 16 29 H 0.02 1.22 7.26 -2.39 -0.02 1.20 16 30 H 0.00 -0.13 8.05 -2.39 -0.02 -0.15 16 31 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.11 3.91 8.06 -2.91 -0.02 3.88 16 33 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 34 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.16 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -74.58 321.72 5.59 -68.99 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.05 Total: 14.94 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 5.32 Total: -17.49 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -2.81 Total: -114.88 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.58 5.59 -68.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019428538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.269 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds