Wall clock time and date at job start Mon Mar 30 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00219 * 2 1 4 4 H 1.48493 * 109.47783 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47224 * 300.00444 * 3 2 1 6 6 H 1.48507 * 109.47065 * 59.99672 * 3 2 1 7 7 C 1.37883 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47102 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.35845 * 117.00415 * 180.02562 * 11 10 9 13 13 C 1.38585 * 120.11253 * 0.02562 * 12 11 10 14 14 C 1.38182 * 120.06157 * 179.97438 * 13 12 11 15 15 C 1.38395 * 120.30193 * 0.02562 * 14 13 12 16 16 C 1.37997 * 120.23734 * 359.97438 * 15 14 13 17 17 C 1.39303 * 119.93433 * 0.02562 * 16 15 14 18 18 C 1.48333 * 120.14811 * 180.02562 * 17 16 15 19 19 C 1.39362 * 120.11831 * 129.72431 * 18 17 16 20 20 C 1.38016 * 119.87218 * 179.76909 * 19 18 17 21 21 C 1.38336 * 120.12147 * 0.50623 * 20 19 18 22 22 C 1.38320 * 120.24567 * 359.74515 * 21 20 19 23 23 C 1.38008 * 120.13107 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00112 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46725 * 60.00325 * 9 7 2 26 26 H 1.09000 * 109.47676 * 300.00194 * 9 7 2 27 27 H 1.09001 * 109.46546 * 60.00784 * 10 9 7 28 28 H 1.09000 * 109.47115 * 300.00661 * 10 9 7 29 29 H 1.08002 * 119.97225 * 359.97438 * 13 12 11 30 30 H 1.07996 * 119.84891 * 180.27805 * 14 13 12 31 31 H 1.07998 * 119.87742 * 179.97438 * 15 14 13 32 32 H 1.08007 * 120.03171 * 179.97438 * 16 15 14 33 33 H 1.07997 * 120.06986 * 359.97438 * 19 18 17 34 34 H 1.07995 * 119.94133 * 180.23037 * 20 19 18 35 35 H 1.07996 * 119.87228 * 179.72170 * 21 20 19 36 36 H 1.08002 * 119.93350 * 179.97438 * 22 21 20 37 37 H 1.08004 * 120.06527 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 8 1.5308 -4.8996 -0.0024 12 6 2.2706 -6.0390 -0.0030 13 6 3.6547 -5.9692 -0.0025 14 6 4.4062 -7.1289 -0.0026 15 6 3.7832 -8.3647 -0.0038 16 6 2.4058 -8.4485 -0.0043 17 6 1.6386 -7.2858 -0.0042 18 6 0.1577 -7.3705 -0.0042 19 6 -0.5844 -6.6413 0.9230 20 6 -1.9623 -6.7201 0.9154 21 6 -2.6063 -7.5291 -0.0035 22 6 -1.8745 -8.2590 -0.9226 23 6 -0.4964 -8.1843 -0.9273 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8725 -3.6048 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 4.1465 -5.0077 -0.0021 30 1 5.4846 -7.0705 0.0023 31 1 4.3772 -9.2666 -0.0043 32 1 1.9231 -9.4147 -0.0056 33 1 -0.0825 -6.0131 1.6441 34 1 -2.5387 -6.1526 1.6310 35 1 -3.6845 -7.5912 -0.0029 36 1 -2.3824 -8.8894 -1.6375 37 1 0.0740 -8.7543 -1.6457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019484239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:13 Heat of formation + Delta-G solvation = -3.164385 kcal Electronic energy + Delta-G solvation = -19122.357416 eV Core-core repulsion = 16215.106776 eV Total energy + Delta-G solvation = -2907.250640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06605 -38.48634 -37.02041 -33.41035 -32.56340 -30.80503 -30.43192 -29.61445 -28.40003 -25.12671 -23.39519 -22.67286 -21.80374 -21.02057 -20.32484 -17.95571 -16.83090 -16.13945 -15.65566 -15.55083 -15.35771 -14.65640 -14.57073 -14.43013 -14.02156 -13.24729 -13.18188 -12.93306 -12.73061 -12.36400 -12.33744 -11.70879 -11.47722 -11.39744 -11.06508 -10.92020 -10.86452 -10.67954 -10.40945 -9.88651 -9.67509 -9.29588 -9.16980 -8.71637 -8.46459 -8.39011 -7.68176 -6.11366 -4.16040 1.08775 1.61231 1.64158 1.86452 3.25586 3.32764 3.36211 3.78837 3.84334 4.10102 4.40124 4.74904 5.02051 5.11363 5.14339 5.16521 5.25189 5.30313 5.42379 5.49931 5.65420 5.78522 5.82028 5.98423 6.01209 6.04143 6.14891 6.22956 6.46586 6.48350 6.59217 6.65509 6.68645 6.72614 6.86031 6.96721 7.19522 7.49511 7.63041 7.79615 8.03839 8.22697 8.89753 9.48412 11.00170 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.004953 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.909144 B = 5651.824827 C = 7111.967855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.063 3.937 11 O -0.306 6.306 12 C 0.158 3.842 13 C -0.213 4.213 14 C -0.077 4.077 15 C -0.172 4.172 16 C -0.070 4.070 17 C -0.096 4.096 18 C -0.030 4.030 19 C -0.086 4.086 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.113 4.113 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -17.604 0.226 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.011 4.011 11 O -0.219 6.219 12 C 0.111 3.889 13 C -0.232 4.232 14 C -0.095 4.095 15 C -0.190 4.190 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.030 4.030 19 C -0.104 4.104 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.131 4.131 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.373 -17.428 0.226 17.484 hybrid contribution 0.717 1.140 -0.063 1.349 sum 2.091 -16.288 0.163 16.422 Atomic orbital electron populations 1.69985 1.06098 1.26852 1.49737 1.24984 0.94889 0.99365 0.94901 0.86445 0.79992 0.83301 0.77733 1.19643 1.20832 1.20825 1.21005 0.93060 0.90209 1.52178 0.92346 1.19107 0.94107 0.88948 0.98849 1.23364 0.97150 0.80917 0.99650 1.86217 1.36231 1.12967 1.86473 1.19192 0.89904 0.87029 0.92820 1.21333 0.92887 1.00003 1.08935 1.20967 0.99508 0.91970 0.97087 1.20859 0.94339 0.97489 1.06331 1.20953 0.93462 0.96666 0.97771 1.18135 0.92108 0.90679 1.08721 1.18583 0.91245 0.97188 0.95946 1.21258 0.93743 0.97287 0.98099 1.21110 0.94497 0.98780 0.99237 1.21142 0.99609 0.97461 0.96036 1.20981 0.93883 1.00299 0.99225 1.21142 0.94398 0.99152 0.98387 0.92761 0.95435 0.95433 0.93104 0.93146 0.85008 0.86126 0.86215 0.85737 0.85755 0.86002 0.86422 0.86355 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 10 C 0.06 1.35 4.68 37.16 0.17 1.52 16 11 O -0.31 -6.28 8.50 -19.25 -0.16 -6.44 16 12 C 0.16 2.79 6.60 -38.87 -0.26 2.53 16 13 C -0.21 -3.32 9.03 -39.47 -0.36 -3.68 16 14 C -0.08 -1.00 10.03 -39.54 -0.40 -1.39 16 15 C -0.17 -2.07 10.03 -39.61 -0.40 -2.46 16 16 C -0.07 -0.92 9.51 -39.27 -0.37 -1.29 16 17 C -0.10 -1.51 5.48 -104.77 -0.57 -2.09 16 18 C -0.03 -0.47 5.27 -104.91 -0.55 -1.02 16 19 C -0.09 -1.39 8.79 -39.24 -0.34 -1.73 16 20 C -0.12 -1.70 10.03 -39.63 -0.40 -2.10 16 21 C -0.12 -1.60 10.04 -39.52 -0.40 -1.99 16 22 C -0.13 -1.57 10.03 -39.64 -0.40 -1.97 16 23 C -0.11 -1.54 9.51 -39.25 -0.37 -1.92 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 28 H 0.05 1.03 7.67 -51.93 -0.40 0.64 16 29 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.33 8.04 -52.48 -0.42 0.91 16 33 H 0.12 2.10 7.70 -52.49 -0.40 1.69 16 34 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.40 8.04 -52.48 -0.42 0.98 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -30.56 319.63 -9.71 -40.27 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.88 Total: 1.19 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -5.20 Total: -30.37 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.16 Total: -6.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.56 -9.71 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019484239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.103 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds