Wall clock time and date at job start Mon Mar 30 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00219 * 2 1 4 4 H 1.48493 * 109.47783 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47224 * 300.00444 * 3 2 1 6 6 H 1.48507 * 109.47065 * 59.99672 * 3 2 1 7 7 C 1.37883 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47102 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.35845 * 117.00415 * 180.02562 * 11 10 9 13 13 C 1.38585 * 120.11253 * 0.02562 * 12 11 10 14 14 C 1.38182 * 120.06157 * 179.97438 * 13 12 11 15 15 C 1.38395 * 120.30193 * 0.02562 * 14 13 12 16 16 C 1.37997 * 120.23734 * 359.97438 * 15 14 13 17 17 C 1.39303 * 119.93433 * 0.02562 * 16 15 14 18 18 C 1.48333 * 120.14811 * 180.02562 * 17 16 15 19 19 C 1.39362 * 120.11831 * 129.72431 * 18 17 16 20 20 C 1.38016 * 119.87218 * 179.76909 * 19 18 17 21 21 C 1.38336 * 120.12147 * 0.50623 * 20 19 18 22 22 C 1.38320 * 120.24567 * 359.74515 * 21 20 19 23 23 C 1.38008 * 120.13107 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00112 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46725 * 60.00325 * 9 7 2 26 26 H 1.09000 * 109.47676 * 300.00194 * 9 7 2 27 27 H 1.09001 * 109.46546 * 60.00784 * 10 9 7 28 28 H 1.09000 * 109.47115 * 300.00661 * 10 9 7 29 29 H 1.08002 * 119.97225 * 359.97438 * 13 12 11 30 30 H 1.07996 * 119.84891 * 180.27805 * 14 13 12 31 31 H 1.07998 * 119.87742 * 179.97438 * 15 14 13 32 32 H 1.08007 * 120.03171 * 179.97438 * 16 15 14 33 33 H 1.07997 * 120.06986 * 359.97438 * 19 18 17 34 34 H 1.07995 * 119.94133 * 180.23037 * 20 19 18 35 35 H 1.07996 * 119.87228 * 179.72170 * 21 20 19 36 36 H 1.08002 * 119.93350 * 179.97438 * 22 21 20 37 37 H 1.08004 * 120.06527 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 8 1.5308 -4.8996 -0.0024 12 6 2.2706 -6.0390 -0.0030 13 6 3.6547 -5.9692 -0.0025 14 6 4.4062 -7.1289 -0.0026 15 6 3.7832 -8.3647 -0.0038 16 6 2.4058 -8.4485 -0.0043 17 6 1.6386 -7.2858 -0.0042 18 6 0.1577 -7.3705 -0.0042 19 6 -0.5844 -6.6413 0.9230 20 6 -1.9623 -6.7201 0.9154 21 6 -2.6063 -7.5291 -0.0035 22 6 -1.8745 -8.2590 -0.9226 23 6 -0.4964 -8.1843 -0.9273 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8725 -3.6048 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 4.1465 -5.0077 -0.0021 30 1 5.4846 -7.0705 0.0023 31 1 4.3772 -9.2666 -0.0043 32 1 1.9231 -9.4147 -0.0056 33 1 -0.0825 -6.0131 1.6441 34 1 -2.5387 -6.1526 1.6310 35 1 -3.6845 -7.5912 -0.0029 36 1 -2.3824 -8.8894 -1.6375 37 1 0.0740 -8.7543 -1.6457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019484239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:12 Heat of formation + Delta-G solvation = -18.111253 kcal Electronic energy + Delta-G solvation = -19123.005561 eV Core-core repulsion = 16215.106776 eV Total energy + Delta-G solvation = -2907.898785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29166 -39.65538 -38.29749 -35.48864 -33.69222 -32.38802 -31.76756 -30.84671 -29.58525 -27.04824 -24.57316 -23.99037 -23.16238 -22.30060 -21.69691 -19.36642 -18.35525 -17.73879 -17.00203 -16.92112 -16.66637 -16.43745 -15.72483 -15.60532 -15.15586 -14.48022 -14.35828 -14.32805 -14.19801 -14.15655 -13.56539 -13.11088 -13.06200 -12.72471 -12.67038 -12.47944 -12.28170 -11.92653 -11.77789 -11.62831 -11.55117 -11.36301 -10.64915 -10.26295 -9.81173 -9.50618 -8.88418 -8.28474 -6.42479 -0.00369 0.48758 0.53781 0.78278 1.39421 1.40420 1.53924 2.25657 2.49990 2.75027 2.99372 3.05961 3.66930 3.95436 4.04733 4.11508 4.15576 4.23539 4.25021 4.30089 4.43323 4.48961 4.59308 4.69715 4.72330 4.74256 4.94280 5.11463 5.16158 5.29432 5.38435 5.43987 5.45501 5.55680 5.59968 5.63881 5.66567 5.74514 5.91963 6.05856 6.13243 6.55612 6.72439 7.27892 8.84903 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.004953 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.909144 B = 5651.824827 C = 7111.967855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.033 3.967 10 C 0.084 3.916 11 O -0.331 6.331 12 C 0.116 3.884 13 C -0.225 4.225 14 C -0.076 4.076 15 C -0.156 4.156 16 C -0.069 4.069 17 C -0.108 4.108 18 C -0.050 4.050 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.117 4.117 24 H 0.267 0.733 25 H -0.006 1.006 26 H -0.003 1.003 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.128 0.872 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -19.447 -0.550 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.088 0.912 9 C -0.004 4.004 10 C 0.009 3.991 11 O -0.244 6.244 12 C 0.070 3.930 13 C -0.244 4.244 14 C -0.094 4.094 15 C -0.174 4.174 16 C -0.087 4.087 17 C -0.109 4.109 18 C -0.050 4.050 19 C -0.134 4.134 20 C -0.152 4.152 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.939 -19.300 -0.547 19.530 hybrid contribution 0.205 1.542 0.177 1.565 sum 3.144 -17.759 -0.370 18.039 Atomic orbital electron populations 1.70131 1.08082 1.28166 1.50606 1.26040 0.95802 1.03678 0.94085 0.85236 0.79056 0.77846 0.77919 1.18105 1.20202 1.20161 1.21419 0.93789 0.91003 1.52154 0.91163 1.18912 0.94403 0.91393 0.95722 1.22858 0.95419 0.80506 1.00298 1.86137 1.37008 1.13426 1.87872 1.19555 0.90950 0.86454 0.96031 1.21464 0.92207 1.01205 1.09506 1.21359 1.01007 0.91278 0.95757 1.21356 0.94161 0.98571 1.03337 1.21324 0.94060 0.96662 0.96627 1.18428 0.92581 0.90934 1.08922 1.18794 0.91606 0.97976 0.96598 1.21242 0.94826 0.98370 0.98925 1.21328 0.93976 0.99587 1.00273 1.21512 1.01184 0.96477 0.95195 1.21426 0.93564 0.99826 0.99167 1.21440 0.95275 0.98768 0.98036 0.92437 0.98742 0.98498 0.92286 0.92439 0.85425 0.82968 0.82250 0.83019 0.88295 0.85338 0.83552 0.82882 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.98 43.89 29.54 68.60 2.03 45.92 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 9 C 0.03 1.84 5.34 29.85 0.16 2.00 16 10 C 0.08 3.78 4.68 71.98 0.34 4.12 16 11 O -0.33 -14.53 8.50 -91.81 -0.78 -15.32 16 12 C 0.12 4.23 6.60 22.73 0.15 4.38 16 13 C -0.23 -6.99 9.03 22.34 0.20 -6.78 16 14 C -0.08 -1.77 10.03 22.29 0.22 -1.55 16 15 C -0.16 -3.18 10.03 22.25 0.22 -2.96 16 16 C -0.07 -1.63 9.51 22.47 0.21 -1.42 16 17 C -0.11 -3.43 5.48 -19.96 -0.11 -3.54 16 18 C -0.05 -1.60 5.27 -20.05 -0.11 -1.71 16 19 C -0.12 -4.01 8.79 22.49 0.20 -3.82 16 20 C -0.13 -4.00 10.03 22.24 0.22 -3.78 16 21 C -0.13 -3.10 10.04 22.31 0.22 -2.87 16 22 C -0.12 -2.80 10.03 22.23 0.22 -2.58 16 23 C -0.12 -3.07 9.51 22.49 0.21 -2.85 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 28 H 0.06 2.46 7.67 -2.39 -0.02 2.44 16 29 H 0.13 3.94 6.30 -2.91 -0.02 3.92 16 30 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 2.71 8.04 -2.91 -0.02 2.69 16 33 H 0.10 3.79 7.70 -2.91 -0.02 3.77 16 34 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.14 2.95 8.04 -2.91 -0.02 2.93 16 Total: -1.00 -69.90 319.63 5.65 -64.26 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.05 Total: 15.95 kcal Atomic # 6 Polarization: -56.88 SS G_CDS: 3.07 Total: -53.81 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.78 Total: -15.32 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.90 5.65 -64.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019484239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.144 kcal (2) G-P(sol) polarization free energy of solvation -69.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds