Wall clock time and date at job start Mon Mar 30 2020 07:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00657 * 2 1 4 4 H 1.48498 * 109.47527 * 270.00556 * 3 2 1 5 5 H 1.48503 * 109.46701 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47342 * 149.99960 * 3 2 1 7 7 C 1.37880 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00430 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99850 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7 12 12 C 1.50701 * 109.46992 * 269.99655 * 11 10 9 13 13 C 1.38643 * 120.79007 * 269.71785 * 12 11 10 14 14 C 1.38208 * 119.16141 * 179.80107 * 13 12 11 15 15 N 1.31868 * 120.76386 * 0.48541 * 14 13 12 16 16 C 1.31874 * 121.72670 * 359.74017 * 15 14 13 17 17 C 1.38206 * 120.76037 * 0.02562 * 16 15 14 18 18 C 1.39682 * 119.99890 * 269.99785 * 10 9 7 19 19 C 1.38910 * 120.07364 * 179.72510 * 18 10 9 20 20 C 1.38108 * 119.92181 * 179.77280 * 19 18 10 21 21 C 1.38290 * 120.07209 * 0.50426 * 20 19 18 22 22 C 1.38278 * 120.15146 * 359.75037 * 21 20 19 23 23 C 1.38103 * 120.07651 * 359.97438 * 22 21 20 24 24 H 0.96999 * 119.99319 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46915 * 60.00270 * 9 7 2 26 26 H 1.08994 * 109.47284 * 299.99534 * 9 7 2 27 27 H 1.09002 * 109.47391 * 149.99645 * 11 10 9 28 28 H 1.09001 * 109.46813 * 29.99701 * 11 10 9 29 29 H 1.08003 * 120.42289 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.61967 * 180.20656 * 14 13 12 31 31 H 1.07991 * 119.61819 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.41568 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.03665 * 0.02562 * 19 18 10 34 34 H 1.07997 * 119.96407 * 180.25717 * 20 19 18 35 35 H 1.08002 * 119.92147 * 179.72813 * 21 20 19 36 36 H 1.08000 * 119.96252 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.03884 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5755 -0.0022 11 6 4.2434 -3.2653 -1.2715 12 6 2.9873 -3.9754 -1.7065 13 6 2.7426 -5.2846 -1.3213 14 6 1.5777 -5.9020 -1.7361 15 7 0.7099 -5.2637 -2.4967 16 6 0.9119 -4.0199 -2.8857 17 6 2.0518 -3.3368 -2.5061 18 6 4.2329 -3.2347 1.2069 19 6 4.6904 -4.5463 1.2077 20 6 4.9245 -5.1936 2.4050 21 6 4.6940 -4.5409 3.6022 22 6 4.2336 -3.2371 3.6050 23 6 4.0028 -2.5820 2.4113 24 1 -0.4849 0.8401 0.0004 25 1 3.8751 -0.6806 0.8888 26 1 3.8745 -0.6803 -0.8911 27 1 5.0453 -3.9921 -1.1419 28 1 4.5312 -2.5381 -2.0307 29 1 3.4514 -5.8141 -0.7020 30 1 1.3780 -6.9205 -1.4377 31 1 0.1782 -3.5296 -3.5082 32 1 2.2118 -2.3185 -2.8283 33 1 4.8667 -5.0579 0.2730 34 1 5.2841 -6.2120 2.4064 35 1 4.8736 -5.0509 4.5372 36 1 4.0542 -2.7304 4.5418 37 1 3.6428 -1.5637 2.4142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019486753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:56 Heat of formation + Delta-G solvation = 75.027631 kcal Electronic energy + Delta-G solvation = -20083.171579 eV Core-core repulsion = 17211.604350 eV Total energy + Delta-G solvation = -2871.567229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84947 -38.78593 -35.99005 -33.03090 -32.22909 -30.81585 -30.34622 -29.34543 -28.07693 -25.34736 -23.08860 -22.63820 -22.10696 -21.13821 -19.82619 -17.21426 -17.03213 -16.16910 -15.72910 -15.34530 -15.12708 -14.85203 -14.22826 -13.91255 -13.40359 -13.25673 -13.23402 -13.03024 -12.82565 -12.44491 -12.11190 -11.84631 -11.64176 -11.22120 -10.91805 -10.82605 -10.71113 -10.43973 -10.11345 -9.69063 -9.26674 -9.01774 -8.93843 -8.69706 -8.59943 -8.38433 -6.57938 -6.16451 -4.16357 1.64328 1.71515 1.97895 2.20335 3.16577 3.25422 3.26921 3.87898 4.28475 4.40325 4.45477 4.90806 5.04197 5.13248 5.13450 5.36505 5.43648 5.50806 5.57980 5.69074 5.74919 5.87172 5.96185 6.12225 6.15898 6.22307 6.28732 6.45821 6.46842 6.62593 6.69632 6.83825 6.95950 7.00772 7.16740 7.20181 7.44612 7.49372 7.94056 8.21928 8.43360 8.46309 8.93381 9.42761 10.96100 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.009893 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.444925 B = 2829.538852 C = 4578.488609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.867 3.133 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.220 3.780 10 N -0.602 5.602 11 C 0.166 3.834 12 C -0.053 4.053 13 C -0.164 4.164 14 C 0.084 3.916 15 N -0.491 5.491 16 C 0.094 3.906 17 C -0.123 4.123 18 C 0.238 3.762 19 C -0.216 4.216 20 C -0.079 4.079 21 C -0.198 4.198 22 C -0.077 4.077 23 C -0.184 4.184 24 H 0.264 0.736 25 H 0.033 0.967 26 H 0.023 0.977 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 -7.637 -1.046 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.129 4.129 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.096 0.904 9 C 0.099 3.901 10 N -0.308 5.308 11 C 0.042 3.958 12 C -0.062 4.062 13 C -0.184 4.184 14 C -0.073 4.073 15 N -0.201 5.201 16 C -0.062 4.062 17 C -0.143 4.143 18 C 0.134 3.866 19 C -0.239 4.239 20 C -0.098 4.098 21 C -0.218 4.218 22 C -0.096 4.096 23 C -0.206 4.206 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.146 0.854 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.637 -7.792 -1.499 11.728 hybrid contribution 0.783 1.476 0.391 1.717 sum 9.420 -6.315 -1.107 11.395 Atomic orbital electron populations 1.69905 1.06132 1.26879 1.49962 1.24883 0.94673 0.98631 0.94701 0.86993 0.80466 0.84422 0.78686 1.20130 1.21016 1.19033 1.21436 0.89166 0.94802 1.51337 0.90354 1.19718 0.95684 0.77735 0.96949 1.46742 1.69106 1.13990 1.00924 1.20209 0.92787 0.95945 0.86895 1.20751 0.97732 0.93498 0.94267 1.22014 0.99441 0.95675 1.01283 1.22542 0.90400 0.99627 0.94734 1.67580 1.30782 1.10074 1.11620 1.22633 0.95715 0.90280 0.97586 1.22002 0.94385 1.00494 0.97426 1.17855 0.91438 0.90969 0.86387 1.20625 1.10601 0.94576 0.98073 1.20701 0.98314 0.98505 0.92238 1.20702 1.07946 0.95937 0.97255 1.20835 0.97118 0.94522 0.97099 1.20866 1.07103 1.01724 0.90893 0.92567 0.94971 0.95950 0.90535 0.90022 0.85443 0.83642 0.83290 0.84711 0.86751 0.87194 0.87466 0.86970 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.53 -13.81 9.41 -34.44 -0.32 -14.13 16 8 H 0.08 2.35 7.83 -52.49 -0.41 1.94 16 9 C 0.22 4.83 4.02 -5.19 -0.02 4.81 16 10 N -0.60 -11.59 2.57 -174.49 -0.45 -12.04 16 11 C 0.17 2.65 5.43 -5.19 -0.03 2.63 16 12 C -0.05 -0.90 5.50 -104.32 -0.57 -1.48 16 13 C -0.16 -2.61 9.44 -39.44 -0.37 -2.99 16 14 C 0.08 1.37 11.18 -17.55 -0.20 1.17 16 15 N -0.49 -8.99 10.36 -13.25 -0.14 -9.12 16 16 C 0.09 1.70 11.18 -17.55 -0.20 1.50 16 17 C -0.12 -2.22 9.06 -39.44 -0.36 -2.58 16 18 C 0.24 4.50 6.55 -83.78 -0.55 3.95 16 19 C -0.22 -3.50 8.54 -39.38 -0.34 -3.83 16 20 C -0.08 -1.17 10.04 -39.61 -0.40 -1.57 16 21 C -0.20 -3.01 10.04 -39.55 -0.40 -3.40 16 22 C -0.08 -1.28 10.04 -39.62 -0.40 -1.68 16 23 C -0.18 -3.55 9.21 -39.38 -0.36 -3.91 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.73 5.26 -51.93 -0.27 0.45 16 26 H 0.02 0.48 7.32 -51.93 -0.38 0.10 16 27 H 0.08 1.04 6.17 -51.93 -0.32 0.72 16 28 H 0.08 1.20 7.85 -51.93 -0.41 0.80 16 29 H 0.13 1.76 5.98 -52.48 -0.31 1.45 16 30 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.11 1.63 4.41 -52.49 -0.23 1.40 16 34 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.13 2.66 6.14 -52.49 -0.32 2.34 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -30.19 307.86 -8.81 -39.00 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.36 Total: 7.10 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -4.61 Total: -19.59 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.19 Total: -46.49 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.19 -8.81 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019486753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.030 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds