Wall clock time and date at job start Mon Mar 30 2020 07:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00657 * 2 1 4 4 H 1.48498 * 109.47527 * 270.00556 * 3 2 1 5 5 H 1.48503 * 109.46701 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47342 * 149.99960 * 3 2 1 7 7 C 1.37880 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00430 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99850 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7 12 12 C 1.50701 * 109.46992 * 269.99655 * 11 10 9 13 13 C 1.38643 * 120.79007 * 269.71785 * 12 11 10 14 14 C 1.38208 * 119.16141 * 179.80107 * 13 12 11 15 15 N 1.31868 * 120.76386 * 0.48541 * 14 13 12 16 16 C 1.31874 * 121.72670 * 359.74017 * 15 14 13 17 17 C 1.38206 * 120.76037 * 0.02562 * 16 15 14 18 18 C 1.39682 * 119.99890 * 269.99785 * 10 9 7 19 19 C 1.38910 * 120.07364 * 179.72510 * 18 10 9 20 20 C 1.38108 * 119.92181 * 179.77280 * 19 18 10 21 21 C 1.38290 * 120.07209 * 0.50426 * 20 19 18 22 22 C 1.38278 * 120.15146 * 359.75037 * 21 20 19 23 23 C 1.38103 * 120.07651 * 359.97438 * 22 21 20 24 24 H 0.96999 * 119.99319 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46915 * 60.00270 * 9 7 2 26 26 H 1.08994 * 109.47284 * 299.99534 * 9 7 2 27 27 H 1.09002 * 109.47391 * 149.99645 * 11 10 9 28 28 H 1.09001 * 109.46813 * 29.99701 * 11 10 9 29 29 H 1.08003 * 120.42289 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.61967 * 180.20656 * 14 13 12 31 31 H 1.07991 * 119.61819 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.41568 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.03665 * 0.02562 * 19 18 10 34 34 H 1.07997 * 119.96407 * 180.25717 * 20 19 18 35 35 H 1.08002 * 119.92147 * 179.72813 * 21 20 19 36 36 H 1.08000 * 119.96252 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.03884 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5755 -0.0022 11 6 4.2434 -3.2653 -1.2715 12 6 2.9873 -3.9754 -1.7065 13 6 2.7426 -5.2846 -1.3213 14 6 1.5777 -5.9020 -1.7361 15 7 0.7099 -5.2637 -2.4967 16 6 0.9119 -4.0199 -2.8857 17 6 2.0518 -3.3368 -2.5061 18 6 4.2329 -3.2347 1.2069 19 6 4.6904 -4.5463 1.2077 20 6 4.9245 -5.1936 2.4050 21 6 4.6940 -4.5409 3.6022 22 6 4.2336 -3.2371 3.6050 23 6 4.0028 -2.5820 2.4113 24 1 -0.4849 0.8401 0.0004 25 1 3.8751 -0.6806 0.8888 26 1 3.8745 -0.6803 -0.8911 27 1 5.0453 -3.9921 -1.1419 28 1 4.5312 -2.5381 -2.0307 29 1 3.4514 -5.8141 -0.7020 30 1 1.3780 -6.9205 -1.4377 31 1 0.1782 -3.5296 -3.5082 32 1 2.2118 -2.3185 -2.8283 33 1 4.8667 -5.0579 0.2730 34 1 5.2841 -6.2120 2.4064 35 1 4.8736 -5.0509 4.5372 36 1 4.0542 -2.7304 4.5418 37 1 3.6428 -1.5637 2.4142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019486753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:55 Heat of formation + Delta-G solvation = 58.395333 kcal Electronic energy + Delta-G solvation = -20083.892810 eV Core-core repulsion = 17211.604350 eV Total energy + Delta-G solvation = -2872.288459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17914 -40.10526 -37.37777 -34.86590 -33.77532 -32.16083 -31.66027 -30.84244 -29.60096 -26.83957 -24.52061 -24.19838 -23.42933 -22.50849 -21.21870 -19.03852 -18.54194 -17.55888 -17.07173 -16.76776 -16.61171 -16.17734 -15.91553 -15.17479 -14.81363 -14.74753 -14.62525 -14.54321 -14.17567 -14.08777 -13.41206 -13.33537 -13.23654 -12.81957 -12.44801 -12.19851 -12.15248 -12.06594 -11.70642 -11.46540 -10.78495 -10.71645 -10.40922 -10.32020 -9.95294 -9.65980 -8.26770 -7.99128 -6.29700 0.31105 0.37145 0.70132 0.91862 1.33079 1.36278 1.44606 2.32491 2.47924 3.03907 3.08142 3.16636 3.63772 3.81584 3.85810 4.12934 4.23257 4.27834 4.32418 4.40908 4.51957 4.61014 4.73750 4.74619 4.81892 4.88365 4.95610 4.98095 5.06055 5.13684 5.30047 5.48913 5.50972 5.59422 5.75749 5.88054 5.89529 6.14111 6.24911 6.60969 6.77318 6.85141 7.09133 7.33937 8.89972 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.009893 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.444925 B = 2829.538852 C = 4578.488609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.936 3.064 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.248 1.248 7 C -0.512 4.512 8 H 0.028 0.972 9 C 0.229 3.771 10 N -0.611 5.611 11 C 0.164 3.836 12 C -0.060 4.060 13 C -0.161 4.161 14 C 0.077 3.923 15 N -0.512 5.512 16 C 0.076 3.924 17 C -0.142 4.142 18 C 0.212 3.788 19 C -0.213 4.213 20 C -0.074 4.074 21 C -0.194 4.194 22 C -0.085 4.085 23 C -0.219 4.219 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.281 -9.292 -0.304 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.171 1.171 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.107 3.893 10 N -0.318 5.318 11 C 0.041 3.959 12 C -0.070 4.070 13 C -0.181 4.181 14 C -0.080 4.080 15 N -0.222 5.222 16 C -0.080 4.080 17 C -0.162 4.162 18 C 0.109 3.891 19 C -0.235 4.235 20 C -0.092 4.092 21 C -0.214 4.214 22 C -0.104 4.104 23 C -0.241 4.241 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.173 0.827 30 H 0.196 0.804 31 H 0.173 0.827 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.367 -9.475 -0.754 14.817 hybrid contribution -0.065 1.814 0.260 1.834 sum 11.301 -7.661 -0.494 13.662 Atomic orbital electron populations 1.70078 1.08209 1.27747 1.52527 1.25743 0.95351 1.02685 0.94600 0.85888 0.79531 0.79251 0.79337 1.18787 1.21573 1.17113 1.21515 0.91364 0.92629 1.49590 0.95319 1.19411 0.92646 0.80191 0.97086 1.46642 1.69682 1.13183 1.02290 1.20440 0.92975 0.96717 0.85817 1.21003 0.97975 0.94222 0.93831 1.22312 0.99734 0.95199 1.00836 1.23153 0.90128 1.00908 0.93762 1.67607 1.31786 1.10165 1.12663 1.22815 0.96140 0.90749 0.98263 1.22044 0.95225 1.00324 0.98634 1.18150 0.92751 0.92309 0.85885 1.20908 1.09514 0.93293 0.99818 1.21189 0.96664 1.00035 0.91347 1.21117 1.06219 0.95093 0.99004 1.21085 0.96961 0.95554 0.96772 1.20871 1.09455 1.01148 0.92665 0.92765 0.95329 0.94648 0.87339 0.89079 0.82663 0.80439 0.82713 0.85703 0.84528 0.83312 0.84423 0.85577 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 41.95 27.47 68.60 1.88 43.83 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.25 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.51 -27.66 9.41 25.60 0.24 -27.42 16 8 H 0.03 1.81 7.83 -2.91 -0.02 1.78 16 9 C 0.23 10.10 4.02 85.63 0.34 10.45 16 10 N -0.61 -23.09 2.57 -705.96 -1.82 -24.90 16 11 C 0.16 4.96 5.43 85.63 0.46 5.42 16 12 C -0.06 -2.02 5.50 -19.67 -0.11 -2.13 16 13 C -0.16 -4.80 9.44 22.36 0.21 -4.59 16 14 C 0.08 2.41 11.18 84.68 0.95 3.35 16 15 N -0.51 -18.78 10.36 -195.84 -2.03 -20.81 16 16 C 0.08 2.84 11.18 84.68 0.95 3.78 16 17 C -0.14 -5.28 9.06 22.36 0.20 -5.08 16 18 C 0.21 7.75 6.55 38.21 0.25 8.00 16 19 C -0.21 -6.16 8.54 22.40 0.19 -5.97 16 20 C -0.07 -1.85 10.04 22.25 0.22 -1.63 16 21 C -0.19 -5.18 10.04 22.29 0.22 -4.95 16 22 C -0.09 -2.71 10.04 22.25 0.22 -2.49 16 23 C -0.22 -8.46 9.21 22.40 0.21 -8.25 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.03 1.30 5.26 -2.39 -0.01 1.29 16 26 H 0.04 1.47 7.32 -2.39 -0.02 1.46 16 27 H 0.11 2.56 6.17 -2.39 -0.01 2.55 16 28 H 0.09 2.55 7.85 -2.39 -0.02 2.53 16 29 H 0.16 3.67 5.98 -2.91 -0.02 3.65 16 30 H 0.18 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.16 5.30 8.06 -2.92 -0.02 5.27 16 32 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.14 3.24 4.41 -2.91 -0.01 3.23 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 36 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.10 4.29 6.14 -2.91 -0.02 4.28 16 Total: -1.00 -68.38 307.86 4.39 -63.99 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 1.02 Total: 25.68 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 5.03 Total: -30.26 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.55 Total: -103.24 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.83 kcal Total: -68.38 4.39 -63.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019486753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.384 kcal (2) G-P(sol) polarization free energy of solvation -68.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds