Wall clock time and date at job start Mon Mar 30 2020 07:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86803 * 119.99563 * 2 1 4 4 H 1.48503 * 109.47141 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47109 * 119.99944 * 3 2 1 6 6 H 1.48495 * 109.47361 * 240.00033 * 3 2 1 7 7 C 1.40068 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99686 * 203.94809 * 7 2 1 9 9 C 1.40899 * 119.99539 * 23.95409 * 7 2 1 10 10 C 1.40257 * 120.70654 * 34.89445 * 9 7 2 11 11 C 1.40225 * 118.14381 * 179.76311 * 10 9 7 12 12 C 1.40851 * 120.57467 * 180.24158 * 11 10 9 13 13 C 1.36129 * 119.70720 * 180.26196 * 12 11 10 14 14 C 1.39301 * 120.77394 * 0.02562 * 13 12 11 15 15 C 1.36276 * 121.06792 * 359.95634 * 14 13 12 16 16 C 1.40439 * 119.97000 * 0.04285 * 15 14 13 17 17 N 1.34032 * 120.12435 * 179.97438 * 16 15 14 18 18 C 1.31361 * 121.96732 * 180.02562 * 17 16 15 19 19 N 1.38088 * 119.76584 * 179.97438 * 18 17 16 20 20 C 1.48536 * 110.99902 * 282.80739 * 19 18 17 21 21 C 1.54939 * 103.22501 * 159.72265 * 20 19 18 22 22 C 1.54597 * 102.92126 * 322.58259 * 21 20 19 23 23 C 1.47897 * 111.00053 * 40.20294 * 19 18 17 24 24 H 0.96998 * 119.99546 * 186.03398 * 1 2 3 25 25 H 1.08003 * 120.92754 * 359.97438 * 10 9 7 26 26 H 1.07997 * 120.14358 * 0.23472 * 12 11 10 27 27 H 1.08004 * 119.61073 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.46232 * 180.02562 * 14 13 12 29 29 H 1.07999 * 120.01882 * 180.02562 * 15 14 13 30 30 H 1.09000 * 110.66436 * 278.14984 * 20 19 18 31 31 H 1.08992 * 110.66594 * 41.28585 * 20 19 18 32 32 H 1.09003 * 110.72189 * 204.23176 * 21 20 19 33 33 H 1.08995 * 110.88034 * 81.01012 * 21 20 19 34 34 H 1.08997 * 110.31029 * 263.04822 * 22 21 20 35 35 H 1.09001 * 110.31185 * 140.87644 * 22 21 20 36 36 H 1.09005 * 109.91747 * 333.50959 * 23 19 18 37 37 H 1.09005 * 109.91922 * 94.79903 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 1.2767 2.7465 0.0006 5 1 3.0956 1.6966 1.2125 6 1 3.0956 1.6966 -1.2124 7 6 2.0084 -1.2130 -0.0005 8 1 3.0186 -1.2533 0.3791 9 6 1.3949 -2.3804 -0.4965 10 6 0.5059 -2.3175 -1.5795 11 6 -0.0701 -3.5130 -2.0327 12 6 -0.9658 -3.5098 -3.1197 13 6 -1.5188 -4.6800 -3.5416 14 6 -1.2100 -5.8827 -2.9103 15 6 -0.3474 -5.9224 -1.8561 16 6 0.2451 -4.7377 -1.3894 17 7 1.0936 -4.7730 -0.3525 18 6 1.6677 -3.6874 0.1137 19 7 2.5344 -3.7763 1.1851 20 6 1.7897 -3.9333 2.4606 21 6 2.8504 -4.5305 3.4192 22 6 3.6462 -5.4868 2.5015 23 6 3.3964 -4.9727 1.0716 24 1 -0.4849 -0.8354 0.0883 25 1 0.2742 -1.3751 -2.0535 26 1 -1.2129 -2.5830 -3.6160 27 1 -2.2051 -4.6757 -4.3756 28 1 -1.6607 -6.7987 -3.2628 29 1 -0.1197 -6.8643 -1.3794 30 1 1.4428 -2.9664 2.8251 31 1 0.9534 -4.6211 2.3356 32 1 2.3719 -5.0820 4.2285 33 1 3.4983 -3.7494 3.8167 34 1 3.2766 -6.5069 2.6066 35 1 4.7090 -5.4423 2.7393 36 1 2.8917 -5.7396 0.4840 37 1 4.3433 -4.7050 0.6025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019801569.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:46 Heat of formation + Delta-G solvation = 45.526649 kcal Electronic energy + Delta-G solvation = -20127.658215 eV Core-core repulsion = 17254.811728 eV Total energy + Delta-G solvation = -2872.846487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69769 -38.23921 -35.77306 -34.26548 -31.70721 -31.36003 -29.13607 -28.42111 -27.98075 -25.37068 -22.96274 -21.89494 -21.12086 -20.60639 -20.13201 -18.36364 -17.08376 -16.48665 -15.51014 -15.29839 -14.28724 -14.22043 -13.78270 -13.58838 -13.43513 -13.18106 -12.90768 -12.49439 -12.24438 -12.02752 -11.93881 -11.33056 -11.25912 -11.04228 -10.92952 -10.81554 -10.60967 -10.50731 -10.43358 -10.19194 -9.78407 -9.43493 -9.03000 -8.72121 -7.94785 -7.57809 -7.30840 -7.24391 -4.56018 1.48092 2.01993 3.01877 3.10343 3.22999 3.29910 3.77294 3.90206 4.45405 4.64523 5.01003 5.06647 5.27417 5.37025 5.45879 5.61552 5.65624 5.74493 5.85851 6.00361 6.04798 6.10051 6.13057 6.21780 6.27623 6.35331 6.44768 6.48949 6.56056 6.67196 6.87952 7.09356 7.15022 7.26733 7.33594 7.36956 7.61905 7.73337 7.78790 7.88537 8.10587 8.54013 8.60173 9.08551 9.85827 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.009636 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.682700 B = 2905.116023 C = 4952.610740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.033 3.967 3 Si 1.067 2.933 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.072 3.928 10 C -0.241 4.241 11 C -0.029 4.029 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.181 4.181 15 C -0.063 4.063 16 C 0.033 3.967 17 N -0.503 5.503 18 C 0.265 3.735 19 N -0.447 5.447 20 C 0.050 3.950 21 C -0.121 4.121 22 C -0.127 4.127 23 C 0.033 3.967 24 H 0.299 0.701 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -4.600 2.183 5.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.190 4.190 3 Si 0.890 3.110 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.490 4.490 8 H 0.111 0.889 9 C 0.065 3.935 10 C -0.266 4.266 11 C -0.031 4.031 12 C -0.156 4.156 13 C -0.133 4.133 14 C -0.201 4.201 15 C -0.082 4.082 16 C -0.087 4.087 17 N -0.214 5.214 18 C 0.014 3.986 19 N -0.169 5.169 20 C -0.077 4.077 21 C -0.159 4.159 22 C -0.165 4.165 23 C -0.094 4.094 24 H 0.112 0.888 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.728 -3.347 2.408 4.944 hybrid contribution -0.555 -1.693 -0.470 1.843 sum 2.174 -5.040 1.937 5.820 Atomic orbital electron populations 1.70429 1.08192 1.34426 1.27023 1.27232 0.95630 1.04524 0.91643 0.83599 0.75667 0.73458 0.78309 1.19778 1.19754 1.19791 1.20574 1.02381 0.92494 1.33580 0.88902 1.19049 0.92101 0.91480 0.90915 1.21163 1.08709 0.95952 1.00765 1.18556 0.95533 0.93953 0.95072 1.20884 0.98972 0.97523 0.98193 1.20552 1.00107 0.92966 0.99655 1.20334 1.02982 0.97282 0.99489 1.20520 0.95774 0.96185 0.95676 1.18073 1.00978 0.92570 0.97043 1.67336 1.08768 1.32418 1.12852 1.21468 0.94231 0.89835 0.93059 1.62264 1.16877 1.37432 1.00308 1.23155 0.95245 1.00618 0.88679 1.22472 0.97619 0.98634 0.97191 1.22360 1.00247 0.98806 0.95069 1.22903 0.97580 0.92213 0.96737 0.88779 0.86757 0.87187 0.87631 0.87561 0.87218 0.89956 0.93632 0.91507 0.90816 0.91915 0.91508 0.91557 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.72 12.70 55.55 0.71 -19.02 16 2 C 0.03 0.79 4.95 -17.31 -0.09 0.70 16 3 Si 1.07 20.42 30.00 -169.99 -5.10 15.32 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.46 -11.52 8.58 -37.89 -0.32 -11.85 16 8 H 0.09 2.29 7.92 -52.49 -0.42 1.87 16 9 C 0.07 1.83 5.23 -104.67 -0.55 1.28 16 10 C -0.24 -6.09 7.94 -38.08 -0.30 -6.39 16 11 C -0.03 -0.69 5.74 -106.77 -0.61 -1.31 16 12 C -0.14 -2.87 9.75 -39.35 -0.38 -3.25 16 13 C -0.11 -2.12 9.96 -39.94 -0.40 -2.52 16 14 C -0.18 -3.33 9.95 -39.89 -0.40 -3.73 16 15 C -0.06 -1.29 9.94 -39.46 -0.39 -1.68 16 16 C 0.03 0.78 6.60 -84.69 -0.56 0.22 16 17 N -0.50 -12.01 8.61 -8.55 -0.07 -12.09 16 18 C 0.27 6.37 5.68 -153.66 -0.87 5.50 16 19 N -0.45 -9.39 4.73 -167.15 -0.79 -10.18 16 20 C 0.05 0.93 6.49 -1.90 -0.01 0.91 16 21 C -0.12 -1.74 7.06 -24.87 -0.18 -1.92 16 22 C -0.13 -1.81 6.93 -25.37 -0.18 -1.98 16 23 C 0.03 0.60 6.58 -2.76 -0.02 0.58 16 24 H 0.30 7.90 7.01 -40.82 -0.29 7.61 16 25 H 0.11 2.94 7.25 -52.48 -0.38 2.56 16 26 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.30 6.63 -51.93 -0.34 0.96 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -27.06 306.59 -10.76 -37.82 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.86 Total: 8.94 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -5.26 Total: -25.43 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.16 Total: -41.28 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.10 Total: 15.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.06 -10.76 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019801569.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.349 kcal (2) G-P(sol) polarization free energy of solvation -27.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds