Wall clock time and date at job start Mon Mar 30 2020 07:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86803 * 119.99563 * 2 1 4 4 H 1.48503 * 109.47141 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47109 * 119.99944 * 3 2 1 6 6 H 1.48495 * 109.47361 * 240.00033 * 3 2 1 7 7 C 1.40068 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99686 * 203.94809 * 7 2 1 9 9 C 1.40899 * 119.99539 * 23.95409 * 7 2 1 10 10 C 1.40257 * 120.70654 * 34.89445 * 9 7 2 11 11 C 1.40225 * 118.14381 * 179.76311 * 10 9 7 12 12 C 1.40851 * 120.57467 * 180.24158 * 11 10 9 13 13 C 1.36129 * 119.70720 * 180.26196 * 12 11 10 14 14 C 1.39301 * 120.77394 * 0.02562 * 13 12 11 15 15 C 1.36276 * 121.06792 * 359.95634 * 14 13 12 16 16 C 1.40439 * 119.97000 * 0.04285 * 15 14 13 17 17 N 1.34032 * 120.12435 * 179.97438 * 16 15 14 18 18 C 1.31361 * 121.96732 * 180.02562 * 17 16 15 19 19 N 1.38088 * 119.76584 * 179.97438 * 18 17 16 20 20 C 1.48536 * 110.99902 * 282.80739 * 19 18 17 21 21 C 1.54939 * 103.22501 * 159.72265 * 20 19 18 22 22 C 1.54597 * 102.92126 * 322.58259 * 21 20 19 23 23 C 1.47897 * 111.00053 * 40.20294 * 19 18 17 24 24 H 0.96998 * 119.99546 * 186.03398 * 1 2 3 25 25 H 1.08003 * 120.92754 * 359.97438 * 10 9 7 26 26 H 1.07997 * 120.14358 * 0.23472 * 12 11 10 27 27 H 1.08004 * 119.61073 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.46232 * 180.02562 * 14 13 12 29 29 H 1.07999 * 120.01882 * 180.02562 * 15 14 13 30 30 H 1.09000 * 110.66436 * 278.14984 * 20 19 18 31 31 H 1.08992 * 110.66594 * 41.28585 * 20 19 18 32 32 H 1.09003 * 110.72189 * 204.23176 * 21 20 19 33 33 H 1.08995 * 110.88034 * 81.01012 * 21 20 19 34 34 H 1.08997 * 110.31029 * 263.04822 * 22 21 20 35 35 H 1.09001 * 110.31185 * 140.87644 * 22 21 20 36 36 H 1.09005 * 109.91747 * 333.50959 * 23 19 18 37 37 H 1.09005 * 109.91922 * 94.79903 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 1.2767 2.7465 0.0006 5 1 3.0956 1.6966 1.2125 6 1 3.0956 1.6966 -1.2124 7 6 2.0084 -1.2130 -0.0005 8 1 3.0186 -1.2533 0.3791 9 6 1.3949 -2.3804 -0.4965 10 6 0.5059 -2.3175 -1.5795 11 6 -0.0701 -3.5130 -2.0327 12 6 -0.9658 -3.5098 -3.1197 13 6 -1.5188 -4.6800 -3.5416 14 6 -1.2100 -5.8827 -2.9103 15 6 -0.3474 -5.9224 -1.8561 16 6 0.2451 -4.7377 -1.3894 17 7 1.0936 -4.7730 -0.3525 18 6 1.6677 -3.6874 0.1137 19 7 2.5344 -3.7763 1.1851 20 6 1.7897 -3.9333 2.4606 21 6 2.8504 -4.5305 3.4192 22 6 3.6462 -5.4868 2.5015 23 6 3.3964 -4.9727 1.0716 24 1 -0.4849 -0.8354 0.0883 25 1 0.2742 -1.3751 -2.0535 26 1 -1.2129 -2.5830 -3.6160 27 1 -2.2051 -4.6757 -4.3756 28 1 -1.6607 -6.7987 -3.2628 29 1 -0.1197 -6.8643 -1.3794 30 1 1.4428 -2.9664 2.8251 31 1 0.9534 -4.6211 2.3356 32 1 2.3719 -5.0820 4.2285 33 1 3.4983 -3.7494 3.8167 34 1 3.2766 -6.5069 2.6066 35 1 4.7090 -5.4423 2.7393 36 1 2.8917 -5.7396 0.4840 37 1 4.3433 -4.7050 0.6025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019801569.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:46 Heat of formation + Delta-G solvation = 31.966752 kcal Electronic energy + Delta-G solvation = -20128.246217 eV Core-core repulsion = 17254.811728 eV Total energy + Delta-G solvation = -2873.434489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39769 -39.78658 -37.44201 -36.02821 -33.43687 -32.88112 -30.87736 -29.83731 -29.59462 -27.18338 -24.58403 -23.64173 -22.79022 -22.01795 -21.63516 -20.13054 -18.76074 -18.13453 -17.18699 -16.65951 -15.92098 -15.83233 -15.44512 -15.17793 -15.04968 -14.79930 -14.62720 -13.96014 -13.90758 -13.64510 -13.47259 -12.90282 -12.86919 -12.52930 -12.31798 -12.21989 -12.17829 -11.99899 -11.92598 -11.55545 -11.43662 -11.19396 -10.81761 -10.49791 -9.63822 -9.43314 -9.10325 -8.95891 -6.47808 -0.23729 0.27243 1.31401 1.51423 1.59116 1.80408 2.10393 2.30388 2.83676 2.89366 3.46088 3.61248 3.84114 3.91713 4.00393 4.08773 4.18423 4.34616 4.41831 4.45282 4.54704 4.56537 4.63572 4.82062 4.89130 4.94353 4.99900 5.03573 5.11875 5.21576 5.29458 5.31589 5.39181 5.56869 5.64857 5.76998 5.83961 5.88073 6.03412 6.14635 6.29722 6.71650 6.75265 7.25245 7.93491 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.009636 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.682700 B = 2905.116023 C = 4952.610740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.003 3.997 3 Si 1.117 2.883 4 H -0.272 1.272 5 H -0.253 1.253 6 H -0.264 1.264 7 C -0.489 4.489 8 H 0.087 0.913 9 C 0.046 3.954 10 C -0.257 4.257 11 C -0.055 4.055 12 C -0.155 4.155 13 C -0.100 4.100 14 C -0.157 4.157 15 C -0.080 4.080 16 C 0.009 3.991 17 N -0.508 5.508 18 C 0.256 3.744 19 N -0.461 5.461 20 C 0.047 3.953 21 C -0.108 4.108 22 C -0.116 4.116 23 C 0.030 3.970 24 H 0.279 0.721 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -6.316 1.978 7.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.214 4.214 3 Si 0.933 3.067 4 H -0.197 1.197 5 H -0.176 1.176 6 H -0.188 1.188 7 C -0.517 4.517 8 H 0.105 0.895 9 C 0.039 3.961 10 C -0.283 4.283 11 C -0.057 4.057 12 C -0.174 4.174 13 C -0.117 4.117 14 C -0.177 4.177 15 C -0.099 4.099 16 C -0.110 4.110 17 N -0.219 5.219 18 C 0.005 3.995 19 N -0.184 5.184 20 C -0.079 4.079 21 C -0.146 4.146 22 C -0.154 4.154 23 C -0.097 4.097 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.136 0.864 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.818 -5.095 2.208 6.226 hybrid contribution -0.723 -1.403 -0.568 1.678 sum 2.095 -6.498 1.639 7.021 Atomic orbital electron populations 1.70551 1.08974 1.32972 1.29966 1.28583 0.95538 1.07455 0.89872 0.83014 0.74789 0.69495 0.79397 1.19670 1.17648 1.18840 1.20603 1.02357 0.93271 1.35445 0.89475 1.19403 0.92633 0.92741 0.91305 1.21133 1.09867 0.95994 1.01321 1.18867 0.96690 0.93663 0.96510 1.21104 0.99118 0.99403 0.97796 1.21072 0.99042 0.91762 0.99863 1.20911 1.00472 0.99037 0.97266 1.20811 0.96526 0.95657 0.96880 1.18676 1.01344 0.93795 0.97224 1.67436 1.09079 1.32238 1.13184 1.21683 0.94635 0.89399 0.93827 1.62235 1.16863 1.39098 1.00175 1.23186 0.96149 0.99745 0.88867 1.22467 0.96358 0.98969 0.96803 1.22347 1.01961 0.99144 0.91903 1.22981 0.96592 0.90714 0.99427 0.90928 0.88495 0.86363 0.83158 0.82925 0.85525 0.91588 0.95289 0.88695 0.89811 0.90455 0.88842 0.93466 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.00 12.70 21.85 0.28 -42.73 16 2 C 0.00 0.13 4.95 85.29 0.42 0.55 16 3 Si 1.12 42.09 30.00 68.60 2.06 44.15 16 4 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.49 -25.77 8.58 23.37 0.20 -25.57 16 8 H 0.09 4.53 7.92 -2.91 -0.02 4.51 16 9 C 0.05 2.49 5.23 -19.90 -0.10 2.39 16 10 C -0.26 -13.88 7.94 23.24 0.18 -13.69 16 11 C -0.06 -2.73 5.74 -21.26 -0.12 -2.86 16 12 C -0.16 -6.42 9.75 22.42 0.22 -6.20 16 13 C -0.10 -3.34 9.96 22.03 0.22 -3.12 16 14 C -0.16 -5.15 9.95 22.07 0.22 -4.93 16 15 C -0.08 -3.15 9.94 22.35 0.22 -2.93 16 16 C 0.01 0.44 6.60 40.24 0.27 0.71 16 17 N -0.51 -25.06 8.61 -180.97 -1.56 -26.62 16 18 C 0.26 12.89 5.68 135.70 0.77 13.66 16 19 N -0.46 -20.01 4.73 -682.74 -3.23 -23.24 16 20 C 0.05 1.79 6.49 86.65 0.56 2.36 16 21 C -0.11 -2.91 7.06 31.80 0.22 -2.68 16 22 C -0.12 -3.04 6.93 31.47 0.22 -2.82 16 23 C 0.03 1.09 6.58 86.45 0.57 1.66 16 24 H 0.28 15.89 7.01 -92.71 -0.65 15.24 16 25 H 0.10 5.39 7.25 -2.91 -0.02 5.36 16 26 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 29 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.03 1.17 7.95 -2.39 -0.02 1.15 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.87 6.63 -2.38 -0.02 1.86 16 37 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -63.30 306.59 2.80 -60.50 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 1.18 Total: 31.40 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 4.07 Total: -43.47 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -4.51 Total: -92.58 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.06 Total: 44.15 kcal Total: -63.30 2.80 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019801569.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.466 kcal (2) G-P(sol) polarization free energy of solvation -63.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds