Wall clock time and date at job start Mon Mar 30 2020 07:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47353 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46911 * 120.00531 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.39672 * 119.99653 * 269.99397 * 10 9 7 19 19 C 1.38916 * 120.07092 * 179.72276 * 18 10 9 20 20 C 1.38108 * 119.92314 * 179.77160 * 19 18 10 21 21 C 1.38286 * 120.07220 * 0.51028 * 20 19 18 22 22 C 1.38286 * 120.15370 * 359.74209 * 21 20 19 23 23 C 1.38102 * 120.07336 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99672 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 26 26 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 27 27 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 28 28 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 29 29 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 30 30 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 31 31 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 32 32 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.04069 * 0.02562 * 19 18 10 34 34 H 1.07994 * 119.96683 * 180.24847 * 20 19 18 35 35 H 1.07999 * 119.92401 * 179.72269 * 21 20 19 36 36 H 1.07994 * 119.96542 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.04416 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6568 -4.1424 -1.2128 19 6 3.5639 -5.1945 -1.2156 20 6 4.0069 -5.7191 -2.4139 21 6 3.5565 -5.1913 -3.6101 22 6 2.6575 -4.1405 -3.6110 23 6 2.2068 -3.6143 -2.4163 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.6869 -3.3895 2.0258 28 1 3.6886 -4.5604 1.1348 29 1 0.4412 -4.0092 2.8172 30 1 -1.0179 -5.9028 3.4992 31 1 -0.4700 -8.1797 2.7366 32 1 2.8620 -6.8029 0.6805 33 1 3.9193 -5.6044 -0.2817 34 1 4.7090 -6.5396 -2.4168 35 1 3.9079 -5.6004 -4.5457 36 1 2.3081 -3.7304 -4.5469 37 1 1.5050 -2.7934 -2.4175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019802767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:52 Heat of formation + Delta-G solvation = 67.858190 kcal Electronic energy + Delta-G solvation = -19727.813140 eV Core-core repulsion = 16855.935021 eV Total energy + Delta-G solvation = -2871.878119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07227 -38.74192 -35.85832 -33.08434 -32.28143 -31.52346 -30.23877 -29.06012 -27.47831 -25.19284 -23.47023 -22.88592 -22.17494 -21.23427 -19.79278 -17.21434 -16.85973 -16.42054 -15.94326 -15.32236 -15.15024 -14.79557 -14.24657 -13.75942 -13.74054 -13.45712 -12.96931 -12.86740 -12.79431 -12.55664 -12.08258 -11.76353 -11.31723 -11.29302 -11.00013 -10.82218 -10.70406 -10.34903 -9.98819 -9.94871 -9.57840 -9.28875 -8.95330 -8.81020 -8.54814 -8.30197 -6.57379 -6.08591 -4.22700 1.26978 1.48651 2.06471 2.28792 3.24537 3.29505 3.32560 3.84575 4.23674 4.38569 4.53733 4.60196 4.98006 5.08755 5.16550 5.19825 5.25803 5.42463 5.50592 5.58606 5.75762 5.84439 5.89797 6.01416 6.13351 6.27741 6.30166 6.36066 6.51579 6.60619 6.88209 6.90703 7.04160 7.14077 7.21221 7.32170 7.57097 7.76024 8.09430 8.12872 8.18700 8.40241 8.86135 9.44489 10.90560 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.007277 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.062353 B = 3846.902670 C = 5443.262024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.253 3.747 10 N -0.606 5.606 11 C 0.166 3.834 12 C -0.145 4.145 13 C -0.058 4.058 14 C -0.176 4.176 15 C 0.087 3.913 16 N -0.490 5.490 17 C 0.107 3.893 18 C 0.238 3.762 19 C -0.221 4.221 20 C -0.078 4.078 21 C -0.202 4.202 22 C -0.077 4.077 23 C -0.185 4.185 24 H 0.265 0.735 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -10.576 2.185 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.133 3.867 10 N -0.311 5.311 11 C 0.041 3.959 12 C -0.149 4.149 13 C -0.085 4.085 14 C -0.195 4.195 15 C -0.070 4.070 16 N -0.198 5.198 17 C -0.050 4.050 18 C 0.133 3.867 19 C -0.244 4.244 20 C -0.096 4.096 21 C -0.222 4.222 22 C -0.096 4.096 23 C -0.207 4.207 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.725 -11.180 2.107 11.699 hybrid contribution 0.104 1.929 0.285 1.953 sum 2.829 -9.251 2.392 9.965 Atomic orbital electron populations 1.69920 1.05992 1.27284 1.50126 1.24950 0.94840 0.99223 0.94940 0.86586 0.79557 0.82709 0.78787 1.20091 1.21208 1.20224 1.21540 0.93631 0.90604 1.51422 0.92192 1.19260 0.87205 0.82232 0.97977 1.47110 1.47999 1.35390 1.00579 1.20125 0.94853 0.93179 0.87721 1.21618 0.98397 0.96868 0.97995 1.21623 0.92669 0.99766 0.94416 1.22118 1.01066 0.94070 1.02282 1.22676 0.94086 0.96088 0.94122 1.67667 1.04716 1.36131 1.11321 1.22758 0.97879 0.88194 0.96194 1.17916 0.91205 0.90928 0.86668 1.20602 1.04291 1.01572 0.97938 1.20687 0.98315 0.98374 0.92268 1.20677 1.03445 1.00897 0.97186 1.20834 0.96188 0.95487 0.97092 1.20915 1.05288 1.03702 0.90812 0.92568 0.94751 0.95312 0.89393 0.90582 0.84579 0.85079 0.83268 0.83002 0.86945 0.87280 0.87591 0.87084 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 13.29 55.43 0.74 -24.24 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.00 9.39 -34.44 -0.32 -14.32 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.25 6.05 4.91 -5.19 -0.03 6.03 16 10 N -0.61 -12.23 2.57 -174.49 -0.45 -12.68 16 11 C 0.17 2.79 5.37 -5.19 -0.03 2.76 16 12 C -0.15 -2.29 5.48 -104.48 -0.57 -2.86 16 13 C -0.06 -0.87 9.86 -39.28 -0.39 -1.26 16 14 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 15 C 0.09 1.17 11.18 -17.54 -0.20 0.97 16 16 N -0.49 -7.62 10.36 -13.25 -0.14 -7.76 16 17 C 0.11 1.65 10.53 -17.55 -0.18 1.46 16 18 C 0.24 4.69 6.55 -83.78 -0.55 4.14 16 19 C -0.22 -3.74 8.50 -39.38 -0.33 -4.08 16 20 C -0.08 -1.21 10.04 -39.61 -0.40 -1.61 16 21 C -0.20 -3.20 10.04 -39.55 -0.40 -3.60 16 22 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 23 C -0.18 -3.73 9.21 -39.38 -0.36 -4.09 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.03 0.89 6.20 -51.93 -0.32 0.57 16 26 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 27 H 0.09 1.49 8.03 -51.93 -0.42 1.08 16 28 H 0.08 1.13 6.14 -51.93 -0.32 0.82 16 29 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.15 2.16 5.87 -52.49 -0.31 1.85 16 33 H 0.11 1.67 4.42 -52.49 -0.23 1.44 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -28.98 313.09 -9.23 -38.21 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.42 Total: 5.24 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -4.65 Total: -19.29 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.15 Total: -44.67 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.98 -9.23 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019802767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.065 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds