Wall clock time and date at job start Mon Mar 30 2020 07:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47353 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46911 * 120.00531 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.39672 * 119.99653 * 269.99397 * 10 9 7 19 19 C 1.38916 * 120.07092 * 179.72276 * 18 10 9 20 20 C 1.38108 * 119.92314 * 179.77160 * 19 18 10 21 21 C 1.38286 * 120.07220 * 0.51028 * 20 19 18 22 22 C 1.38286 * 120.15370 * 359.74209 * 21 20 19 23 23 C 1.38102 * 120.07336 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99672 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 26 26 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 27 27 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 28 28 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 29 29 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 30 30 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 31 31 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 32 32 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.04069 * 0.02562 * 19 18 10 34 34 H 1.07994 * 119.96683 * 180.24847 * 20 19 18 35 35 H 1.07999 * 119.92401 * 179.72269 * 21 20 19 36 36 H 1.07994 * 119.96542 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.04416 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6568 -4.1424 -1.2128 19 6 3.5639 -5.1945 -1.2156 20 6 4.0069 -5.7191 -2.4139 21 6 3.5565 -5.1913 -3.6101 22 6 2.6575 -4.1405 -3.6110 23 6 2.2068 -3.6143 -2.4163 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.6869 -3.3895 2.0258 28 1 3.6886 -4.5604 1.1348 29 1 0.4412 -4.0092 2.8172 30 1 -1.0179 -5.9028 3.4992 31 1 -0.4700 -8.1797 2.7366 32 1 2.8620 -6.8029 0.6805 33 1 3.9193 -5.6044 -0.2817 34 1 4.7090 -6.5396 -2.4168 35 1 3.9079 -5.6004 -4.5457 36 1 2.3081 -3.7304 -4.5469 37 1 1.5050 -2.7934 -2.4175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019802767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:52 Heat of formation + Delta-G solvation = 53.298631 kcal Electronic energy + Delta-G solvation = -19728.444490 eV Core-core repulsion = 16855.935021 eV Total energy + Delta-G solvation = -2872.509469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25635 -40.10013 -37.31375 -34.95161 -33.60541 -32.75937 -31.58631 -30.59642 -29.06862 -26.74821 -24.83914 -24.37391 -23.44707 -22.59804 -21.23352 -18.64411 -18.53568 -17.87553 -17.14196 -16.85480 -16.56121 -16.21448 -15.86464 -15.10349 -15.00100 -14.73294 -14.36271 -14.33663 -14.15673 -13.95112 -13.55878 -13.20837 -13.07803 -12.92081 -12.53280 -12.42572 -12.28976 -12.02810 -11.78111 -11.48194 -10.74644 -10.67338 -10.60660 -10.34035 -9.95337 -9.66521 -8.37160 -7.86154 -6.36368 0.14924 0.33374 0.69828 0.92219 1.37835 1.39343 1.47336 2.33492 2.53935 3.00192 3.07300 3.17150 3.53398 3.84879 3.88574 4.05780 4.10590 4.17653 4.27838 4.41067 4.51263 4.67078 4.70406 4.75130 4.81304 4.85992 4.97563 5.11532 5.16493 5.23737 5.30683 5.40219 5.59004 5.69846 5.76133 5.78287 5.89072 6.08208 6.22034 6.49263 6.82264 6.91285 7.01024 7.35472 8.83547 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.007277 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.062353 B = 3846.902670 C = 5443.262024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.015 3.985 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.274 3.726 10 N -0.615 5.615 11 C 0.169 3.831 12 C -0.157 4.157 13 C -0.076 4.076 14 C -0.170 4.170 15 C 0.087 3.913 16 N -0.507 5.507 17 C 0.102 3.898 18 C 0.213 3.787 19 C -0.218 4.218 20 C -0.073 4.073 21 C -0.195 4.195 22 C -0.082 4.082 23 C -0.220 4.220 24 H 0.266 0.734 25 H 0.004 0.996 26 H 0.011 0.989 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.161 0.839 31 H 0.185 0.815 32 H 0.163 0.837 33 H 0.133 0.867 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -12.304 2.083 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.321 5.321 11 C 0.045 3.955 12 C -0.160 4.160 13 C -0.103 4.103 14 C -0.189 4.189 15 C -0.070 4.070 16 N -0.216 5.216 17 C -0.055 4.055 18 C 0.109 3.891 19 C -0.240 4.240 20 C -0.091 4.091 21 C -0.215 4.215 22 C -0.101 4.101 23 C -0.243 4.243 24 H 0.075 0.925 25 H 0.022 0.978 26 H 0.029 0.971 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.146 0.854 30 H 0.178 0.822 31 H 0.202 0.798 32 H 0.180 0.820 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.142 -12.934 2.002 13.728 hybrid contribution -0.344 2.360 0.271 2.401 sum 3.798 -10.574 2.273 11.463 Atomic orbital electron populations 1.70030 1.07360 1.28089 1.51081 1.25732 0.95612 1.02518 0.94580 0.85602 0.78386 0.78759 0.78896 1.20007 1.20620 1.19284 1.21765 0.93287 0.91914 1.50974 0.93020 1.18694 0.87356 0.83197 0.95492 1.46925 1.47987 1.35072 1.02153 1.20185 0.96085 0.93229 0.86003 1.21502 0.98770 0.96783 0.98948 1.21763 0.93283 1.00240 0.95015 1.22431 1.01289 0.93381 1.01848 1.23279 0.93593 0.97206 0.92890 1.67717 1.05545 1.36210 1.12134 1.22869 0.98387 0.87887 0.96365 1.18191 0.92565 0.92297 0.86039 1.20869 1.03094 1.00335 0.99725 1.21179 0.97931 0.98631 0.91356 1.21096 1.01911 0.99570 0.98947 1.21075 0.96410 0.95997 0.96622 1.20843 1.06471 1.04194 0.92751 0.92477 0.97813 0.97082 0.90508 0.88564 0.85394 0.82154 0.79839 0.82026 0.84922 0.83357 0.84228 0.85521 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.29 21.45 0.28 -53.26 16 2 C 0.01 0.82 5.46 84.65 0.46 1.29 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -29.61 9.39 25.60 0.24 -29.37 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.27 13.98 4.91 85.63 0.42 14.40 16 10 N -0.61 -25.82 2.57 -705.95 -1.82 -27.64 16 11 C 0.17 5.77 5.37 85.63 0.46 6.23 16 12 C -0.16 -4.94 5.48 -19.77 -0.11 -5.05 16 13 C -0.08 -2.32 9.86 22.47 0.22 -2.10 16 14 C -0.17 -4.21 10.11 22.36 0.23 -3.98 16 15 C 0.09 2.14 11.18 84.69 0.95 3.09 16 16 N -0.51 -14.90 10.36 -195.83 -2.03 -16.92 16 17 C 0.10 3.02 10.53 84.67 0.89 3.91 16 18 C 0.21 8.53 6.55 38.22 0.25 8.78 16 19 C -0.22 -6.99 8.50 22.40 0.19 -6.80 16 20 C -0.07 -2.01 10.04 22.25 0.22 -1.78 16 21 C -0.20 -5.60 10.04 22.29 0.22 -5.37 16 22 C -0.08 -2.82 10.04 22.25 0.22 -2.60 16 23 C -0.22 -9.24 9.21 22.40 0.21 -9.04 16 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.00 0.22 6.20 -2.39 -0.01 0.21 16 26 H 0.01 0.60 8.07 -2.38 -0.02 0.58 16 27 H 0.08 2.73 8.03 -2.39 -0.02 2.71 16 28 H 0.10 2.81 6.14 -2.39 -0.01 2.80 16 29 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.16 4.30 5.87 -2.91 -0.02 4.29 16 33 H 0.13 3.63 4.42 -2.91 -0.01 3.62 16 34 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.09 4.56 6.14 -2.91 -0.02 4.54 16 Total: -1.00 -64.55 313.09 4.62 -59.93 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.07 Total: 20.81 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 5.08 Total: -28.39 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -3.56 Total: -97.83 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.55 4.62 -59.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019802767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.231 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds