Wall clock time and date at job start Mon Mar 30 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38258 * 119.99766 * 2 1 4 4 C 1.38224 * 119.99842 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99907 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99600 * 359.70502 * 5 4 3 7 7 C 1.38212 * 120.00270 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99548 * 0.02562 * 7 2 1 9 9 O 1.42905 * 109.46724 * 179.97438 * 8 7 2 10 10 C 1.35672 * 116.99443 * 179.97438 * 9 8 7 11 11 C 1.39320 * 119.81318 * 180.02562 * 10 9 8 12 12 C 1.36440 * 120.18380 * 180.25944 * 11 10 9 13 13 C 1.40837 * 119.80773 * 359.45756 * 12 11 10 14 14 C 1.41218 * 120.17528 * 180.25420 * 13 12 11 15 15 H 1.08003 * 119.99900 * 204.72191 * 14 13 12 16 16 C 1.39892 * 120.00136 * 24.72013 * 14 13 12 17 17 N 1.30882 * 119.99699 * 17.77743 * 16 14 13 18 18 Si 1.86795 * 120.00105 * 197.77306 * 16 14 13 19 19 H 1.48506 * 109.47332 * 90.00214 * 18 16 14 20 20 H 1.48504 * 109.47329 * 210.00225 * 18 16 14 21 21 H 1.48506 * 109.47349 * 330.00330 * 18 16 14 22 22 C 1.40826 * 119.64447 * 0.54108 * 13 12 11 23 23 C 1.36440 * 119.81067 * 359.73281 * 22 13 12 24 24 H 1.08999 * 109.47623 * 270.02225 * 1 2 3 25 25 H 1.09006 * 109.46935 * 30.02705 * 1 2 3 26 26 H 1.09002 * 109.47154 * 150.02095 * 1 2 3 27 27 H 1.08001 * 120.00512 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.99726 * 179.97438 * 4 3 2 29 29 H 1.07995 * 119.99617 * 179.97438 * 5 4 3 30 30 H 1.08006 * 119.99448 * 180.29683 * 6 5 4 31 31 H 1.09003 * 109.46912 * 59.99975 * 8 7 2 32 32 H 1.08998 * 109.47529 * 299.99803 * 8 7 2 33 33 H 1.07999 * 119.90506 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.09344 * 179.70738 * 12 11 10 35 35 H 0.97005 * 119.99704 * 180.02562 * 17 16 14 36 36 H 1.07996 * 120.09683 * 179.70684 * 22 13 12 37 37 H 1.08006 * 119.90524 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5805 -1.1969 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0005 9 8 2.3732 -3.5882 0.0005 10 6 1.8545 -4.8419 0.0011 11 6 2.7068 -5.9440 0.0016 12 6 2.1934 -7.2081 -0.0031 13 6 0.7977 -7.3970 0.0029 14 6 0.2580 -8.7019 0.0034 15 1 -0.7353 -8.8756 -0.3835 16 6 1.0098 -9.7696 0.5051 17 7 2.0405 -9.5381 1.2778 18 14 0.5427 -11.5257 0.0722 19 1 1.2499 -11.9347 -1.1680 20 1 0.9309 -12.4298 1.1845 21 1 -0.9241 -11.6088 -0.1442 22 6 -0.0567 -6.2775 0.0023 23 6 0.4729 -5.0200 0.0014 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6582 2.1327 0.0004 28 1 4.1203 2.1327 0.0001 29 1 5.3517 0.0001 0.0005 30 1 4.1206 -2.1322 0.0110 31 1 0.8182 -2.5599 -0.8897 32 1 0.8175 -2.5596 0.8903 33 1 3.7767 -5.7973 0.0012 34 1 2.8553 -8.0614 -0.0075 35 1 2.5621 -10.2785 1.6254 36 1 -1.1280 -6.4138 0.0021 37 1 -0.1809 -4.1604 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019805060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:42 Heat of formation + Delta-G solvation = -4.962080 kcal Electronic energy + Delta-G solvation = -18864.735499 eV Core-core repulsion = 15957.406905 eV Total energy + Delta-G solvation = -2907.328594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69572 -38.48758 -36.36482 -33.42792 -33.00988 -31.55431 -29.73780 -28.98294 -27.24745 -26.04774 -24.69535 -22.12236 -21.31430 -20.55334 -20.24057 -17.37384 -17.02402 -16.46088 -15.34686 -15.23225 -14.99442 -14.92089 -14.21500 -13.91020 -13.67126 -13.14148 -13.05000 -12.77201 -12.35132 -12.19760 -12.13413 -12.07672 -11.69705 -11.45592 -11.15472 -11.00733 -10.88750 -10.68967 -10.61143 -10.03231 -9.83328 -9.34422 -9.04530 -8.72496 -8.52381 -7.64540 -7.03677 -6.72556 -4.25968 1.34943 1.44625 2.77554 2.95066 3.08693 3.11977 3.21335 3.78169 3.94880 4.02402 4.61624 4.82945 4.85808 5.03097 5.13747 5.24097 5.49807 5.56713 5.60033 5.64079 5.71572 5.73673 5.85183 6.05009 6.09374 6.16574 6.21635 6.47823 6.56672 6.64112 6.77598 6.98180 7.04829 7.11503 7.18638 7.46550 7.55378 7.79242 8.00269 8.20071 8.44510 8.64902 8.89787 8.98385 10.21973 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.047592 B = 0.003434 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.198679 B = 8151.074245 C = 8651.264314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.124 4.124 5 C -0.129 4.129 6 C -0.092 4.092 7 C -0.082 4.082 8 C 0.109 3.891 9 O -0.325 6.325 10 C -0.009 4.009 11 C -0.119 4.119 12 C -0.134 4.134 13 C 0.089 3.911 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.799 5.799 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.198 4.198 23 C -0.167 4.167 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.280 0.720 36 H 0.095 0.905 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 14.763 -1.756 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.110 4.110 7 C -0.082 4.082 8 C 0.033 3.967 9 O -0.241 6.241 10 C -0.052 4.052 11 C -0.138 4.138 12 C -0.153 4.153 13 C 0.086 3.914 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.425 5.425 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.218 4.218 23 C -0.186 4.186 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.153 0.847 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.102 14.679 -1.608 14.808 hybrid contribution -0.386 -0.764 -0.038 0.857 sum 0.716 13.915 -1.645 14.030 Atomic orbital electron populations 1.20844 0.91261 1.02949 1.02529 1.19622 0.95990 0.92292 1.00482 1.20909 0.94254 0.97018 1.02002 1.21101 0.94293 0.97931 1.00843 1.21169 0.99856 0.92491 1.01138 1.21116 0.93762 0.98655 0.97427 1.19668 0.94372 0.93340 1.00844 1.21157 0.91107 0.83546 1.00889 1.85769 1.34407 1.12540 1.91391 1.18568 0.91876 0.82398 1.12319 1.19825 0.97194 0.91049 1.05712 1.20976 0.95906 0.94652 1.03762 1.17597 0.91533 0.92603 0.89642 1.19477 1.01947 0.91531 1.36421 0.90536 1.25879 0.94143 1.01579 0.92602 1.69837 1.15562 1.34276 1.22796 0.86322 0.80051 0.81391 0.78981 1.19323 1.20390 1.18714 1.20564 0.97945 0.91937 1.11318 1.20408 0.92928 0.97315 1.07907 0.90953 0.91498 0.91246 0.86201 0.86366 0.86170 0.84741 0.91762 0.91765 0.88490 0.85680 0.90923 0.88720 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.60 36.00 0.35 -0.87 16 2 C -0.08 -1.06 5.88 -104.63 -0.62 -1.68 16 3 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 4 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 5 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 6 C -0.09 -1.35 9.38 -39.58 -0.37 -1.72 16 7 C -0.08 -1.23 5.88 -104.63 -0.62 -1.84 16 8 C 0.11 1.80 3.84 36.01 0.14 1.94 16 9 O -0.33 -6.64 8.60 -18.72 -0.16 -6.80 16 10 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 11 C -0.12 -2.88 9.92 -39.83 -0.40 -3.27 16 12 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 13 C 0.09 2.36 5.57 -106.80 -0.60 1.77 16 14 C -0.46 -12.31 9.04 -37.83 -0.34 -12.65 16 15 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 16 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 17 N -0.80 -20.69 10.96 55.54 0.61 -20.08 16 18 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 22 C -0.20 -4.86 9.74 -39.25 -0.38 -5.24 16 23 C -0.17 -3.77 8.96 -39.83 -0.36 -4.13 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.07 0.72 6.64 -51.93 -0.34 0.38 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 2.10 7.01 -52.48 -0.37 1.73 16 31 H 0.06 1.02 7.00 -51.93 -0.36 0.66 16 32 H 0.06 1.04 7.64 -51.93 -0.40 0.64 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.13 3.34 6.17 -52.49 -0.32 3.01 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.09 1.82 6.27 -52.48 -0.33 1.49 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -28.30 312.02 -9.57 -37.87 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.63 Total: 6.36 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -5.06 Total: -35.71 kcal Atomic # 7 Polarization: -20.69 SS G_CDS: 0.61 Total: -20.08 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.16 Total: -6.80 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.30 -9.57 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019805060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.909 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds