Wall clock time and date at job start Mon Mar 30 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38819 * 119.70011 * 2 1 4 4 C 1.36493 * 120.53810 * 179.97438 * 3 2 1 5 5 C 1.40719 * 119.92512 * 0.04273 * 4 3 2 6 6 C 1.41161 * 120.28873 * 180.25264 * 5 4 3 7 7 H 1.08005 * 119.99938 * 154.71066 * 6 5 4 8 8 C 1.39928 * 120.00004 * 334.71184 * 6 5 4 9 9 N 1.30874 * 119.99939 * 342.59606 * 8 6 5 10 10 Si 1.86800 * 120.00222 * 162.59309 * 8 6 5 11 11 H 1.48494 * 109.47013 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47246 * 119.99925 * 10 8 6 13 13 H 1.48502 * 109.46977 * 240.00047 * 10 8 6 14 14 C 1.41320 * 119.42635 * 359.97438 * 5 4 3 15 15 O 1.35646 * 120.27170 * 180.02562 * 14 5 4 16 16 C 1.42893 * 117.00209 * 180.02562 * 15 14 5 17 17 C 1.50702 * 109.47135 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.00092 * 269.72727 * 17 16 15 19 19 C 1.38234 * 119.99923 * 179.76585 * 18 17 16 20 20 C 1.38240 * 119.99782 * 0.50560 * 19 18 17 21 21 C 1.38231 * 120.00018 * 359.74407 * 20 19 18 22 22 C 1.38233 * 120.00421 * 0.02562 * 21 20 19 23 23 C 1.38304 * 119.70740 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47023 * 269.97505 * 1 2 3 25 25 H 1.08997 * 109.47308 * 29.97388 * 1 2 3 26 26 H 1.09004 * 109.46746 * 149.98138 * 1 2 3 27 27 H 1.07997 * 119.73154 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.03607 * 180.02562 * 4 3 2 29 29 H 0.97000 * 120.00138 * 180.02562 * 9 8 6 30 30 H 1.09006 * 109.47063 * 300.00087 * 16 15 14 31 31 H 1.08997 * 109.47228 * 60.00396 * 16 15 14 32 32 H 1.08002 * 119.99732 * 359.97438 * 18 17 16 33 33 H 1.07996 * 120.00453 * 180.22981 * 19 18 17 34 34 H 1.08000 * 119.99640 * 179.72787 * 20 19 18 35 35 H 1.08003 * 119.99652 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00352 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.96914 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2058 0.0000 4 6 3.5596 1.2258 0.0005 5 6 4.2794 0.0166 0.0002 6 6 5.6909 0.0283 0.0061 7 1 6.2363 -0.8140 0.4056 8 6 6.3836 1.1312 -0.5056 9 7 5.7704 1.9848 -1.2854 10 14 8.1836 1.3852 -0.0757 11 1 8.6394 0.2879 0.8150 12 1 8.9949 1.3817 -1.3195 13 1 8.3476 2.6876 0.6187 14 6 3.5768 -1.2096 -0.0002 15 8 4.2534 -2.3853 0.0000 16 6 3.4734 -3.5826 -0.0010 17 6 4.3898 -4.7790 0.0000 18 6 4.8069 -5.3312 -1.1967 19 6 5.6513 -6.4256 -1.1958 20 6 6.0702 -6.9744 0.0019 21 6 5.6490 -6.4254 1.1985 22 6 4.8084 -5.3280 1.1977 23 6 2.1924 -1.2013 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6456 2.1357 0.0004 28 1 4.0864 2.1685 0.0009 29 1 6.2506 2.7491 -1.6405 30 1 2.8439 -3.6068 0.8886 31 1 2.8453 -3.6064 -0.8915 32 1 4.4758 -4.9054 -2.1323 33 1 5.9802 -6.8548 -2.1306 34 1 6.7264 -7.8322 0.0026 35 1 5.9759 -6.8544 2.1342 36 1 4.4789 -4.8994 2.1326 37 1 1.6472 -2.1335 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034309554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:48 Heat of formation + Delta-G solvation = -3.247508 kcal Electronic energy + Delta-G solvation = -19256.636278 eV Core-core repulsion = 16349.382034 eV Total energy + Delta-G solvation = -2907.254245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.33828 -38.40117 -36.25219 -33.90495 -31.95521 -30.78212 -30.75664 -28.56070 -27.42516 -26.02358 -23.64445 -22.45072 -21.57656 -20.38645 -20.09557 -17.40381 -16.72696 -16.19166 -15.44583 -15.38779 -14.99945 -14.21548 -14.04325 -13.94852 -13.27146 -13.08604 -12.84072 -12.70006 -12.52495 -12.44231 -11.90539 -11.53596 -11.47892 -11.16831 -11.02066 -10.87797 -10.79732 -10.52606 -10.39129 -9.75317 -9.67668 -9.45508 -9.08057 -8.79739 -8.66324 -7.36557 -6.96688 -6.65519 -4.17946 1.40471 1.52637 2.74780 3.02610 3.12297 3.18741 3.21227 3.78763 4.00435 4.55040 4.64766 4.96623 5.04094 5.14760 5.28044 5.48024 5.60393 5.64017 5.78900 5.81396 5.98006 6.05973 6.10031 6.17372 6.26046 6.36441 6.51782 6.54346 6.56265 6.58732 6.78862 6.97521 7.10285 7.14748 7.37631 7.40671 7.76126 7.81334 8.11119 8.26696 8.45756 8.75213 8.90042 9.11723 10.25765 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.006518 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.077583 B = 4294.836281 C = 6095.896145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.189 4.189 3 C -0.121 4.121 4 C -0.145 4.145 5 C 0.098 3.902 6 C -0.444 4.444 7 H 0.082 0.918 8 C 0.073 3.927 9 N -0.798 5.798 10 Si 0.906 3.094 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.273 1.273 14 C 0.011 3.989 15 O -0.300 6.300 16 C 0.102 3.898 17 C -0.079 4.079 18 C -0.097 4.097 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.098 4.098 23 C -0.173 4.173 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.279 0.721 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -10.953 1.772 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.191 4.191 3 C -0.139 4.139 4 C -0.164 4.164 5 C 0.095 3.905 6 C -0.473 4.473 7 H 0.100 0.900 8 C -0.143 4.143 9 N -0.424 5.424 10 Si 0.731 3.269 11 H -0.184 1.184 12 H -0.201 1.201 13 H -0.198 1.198 14 C -0.033 4.033 15 O -0.215 6.215 16 C 0.026 3.974 17 C -0.079 4.079 18 C -0.115 4.115 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.116 4.116 23 C -0.192 4.192 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.404 -10.770 1.627 10.983 hybrid contribution 0.571 0.155 0.027 0.593 sum -0.833 -10.616 1.654 10.776 Atomic orbital electron populations 1.20426 0.93742 1.00283 0.99763 1.18930 0.93710 0.92833 1.13591 1.20262 0.94723 0.95346 1.03605 1.20849 0.92259 0.98018 1.05298 1.17055 0.93480 0.87799 0.92185 1.19459 0.91237 1.02178 1.34467 0.90016 1.25885 1.00719 0.94946 0.92794 1.69851 1.38522 1.11423 1.22639 0.86288 0.82164 0.79190 0.79282 1.18371 1.20081 1.19775 1.19183 0.89739 0.84882 1.09493 1.86037 1.34002 1.11104 1.90376 1.21286 0.92129 0.83050 1.00897 1.19713 0.98882 0.95790 0.93493 1.21119 0.96931 0.95641 0.97809 1.21111 0.98371 0.96822 0.98044 1.21129 1.00027 1.00051 0.92712 1.21101 0.98456 0.96815 0.98034 1.21102 0.97066 0.95716 0.97735 1.20465 0.92648 0.96765 1.09311 0.93751 0.93417 0.93781 0.89380 0.85876 0.91058 0.92588 0.92509 0.85854 0.86122 0.86330 0.86149 0.85917 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 10.00 36.01 0.36 -1.16 16 2 C -0.19 -4.23 5.90 -104.38 -0.62 -4.85 16 3 C -0.12 -2.87 9.61 -40.00 -0.38 -3.26 16 4 C -0.14 -3.81 8.64 -39.27 -0.34 -4.15 16 5 C 0.10 2.67 5.58 -106.68 -0.59 2.08 16 6 C -0.44 -12.25 8.72 -37.84 -0.33 -12.58 16 7 H 0.08 2.27 7.66 -52.48 -0.40 1.87 16 8 C 0.07 1.89 5.14 -17.33 -0.09 1.80 16 9 N -0.80 -21.04 10.98 55.55 0.61 -20.43 16 10 Si 0.91 19.39 29.59 -169.99 -5.03 14.36 16 11 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 14 C 0.01 0.28 6.72 -38.34 -0.26 0.02 16 15 O -0.30 -7.06 9.42 -18.64 -0.18 -7.24 16 16 C 0.10 1.86 4.87 36.01 0.18 2.03 16 17 C -0.08 -1.28 5.51 -104.62 -0.58 -1.86 16 18 C -0.10 -1.44 9.70 -39.58 -0.38 -1.83 16 19 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 20 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 21 C -0.13 -1.59 10.05 -39.59 -0.40 -1.99 16 22 C -0.10 -1.44 9.70 -39.58 -0.38 -1.82 16 23 C -0.17 -3.94 8.67 -39.48 -0.34 -4.28 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.04 0.71 8.08 -51.93 -0.42 0.30 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.12 3.32 6.19 -52.49 -0.32 3.00 16 29 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 30 H 0.06 0.95 7.61 -51.93 -0.40 0.55 16 31 H 0.06 0.98 7.61 -51.93 -0.40 0.58 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.09 1.88 6.31 -52.49 -0.33 1.55 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -29.36 316.53 -9.56 -38.93 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.78 Total: 5.29 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -4.96 Total: -35.68 kcal Atomic # 7 Polarization: -21.04 SS G_CDS: 0.61 Total: -20.43 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.18 Total: -7.24 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.36 -9.56 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034309554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.679 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds