Wall clock time and date at job start Mon Mar 30 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38819 * 119.70011 * 2 1 4 4 C 1.36493 * 120.53810 * 179.97438 * 3 2 1 5 5 C 1.40719 * 119.92512 * 0.04273 * 4 3 2 6 6 C 1.41161 * 120.28873 * 180.25264 * 5 4 3 7 7 H 1.08005 * 119.99938 * 154.71066 * 6 5 4 8 8 C 1.39928 * 120.00004 * 334.71184 * 6 5 4 9 9 N 1.30874 * 119.99939 * 342.59606 * 8 6 5 10 10 Si 1.86800 * 120.00222 * 162.59309 * 8 6 5 11 11 H 1.48494 * 109.47013 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47246 * 119.99925 * 10 8 6 13 13 H 1.48502 * 109.46977 * 240.00047 * 10 8 6 14 14 C 1.41320 * 119.42635 * 359.97438 * 5 4 3 15 15 O 1.35646 * 120.27170 * 180.02562 * 14 5 4 16 16 C 1.42893 * 117.00209 * 180.02562 * 15 14 5 17 17 C 1.50702 * 109.47135 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.00092 * 269.72727 * 17 16 15 19 19 C 1.38234 * 119.99923 * 179.76585 * 18 17 16 20 20 C 1.38240 * 119.99782 * 0.50560 * 19 18 17 21 21 C 1.38231 * 120.00018 * 359.74407 * 20 19 18 22 22 C 1.38233 * 120.00421 * 0.02562 * 21 20 19 23 23 C 1.38304 * 119.70740 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47023 * 269.97505 * 1 2 3 25 25 H 1.08997 * 109.47308 * 29.97388 * 1 2 3 26 26 H 1.09004 * 109.46746 * 149.98138 * 1 2 3 27 27 H 1.07997 * 119.73154 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.03607 * 180.02562 * 4 3 2 29 29 H 0.97000 * 120.00138 * 180.02562 * 9 8 6 30 30 H 1.09006 * 109.47063 * 300.00087 * 16 15 14 31 31 H 1.08997 * 109.47228 * 60.00396 * 16 15 14 32 32 H 1.08002 * 119.99732 * 359.97438 * 18 17 16 33 33 H 1.07996 * 120.00453 * 180.22981 * 19 18 17 34 34 H 1.08000 * 119.99640 * 179.72787 * 20 19 18 35 35 H 1.08003 * 119.99652 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00352 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.96914 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2058 0.0000 4 6 3.5596 1.2258 0.0005 5 6 4.2794 0.0166 0.0002 6 6 5.6909 0.0283 0.0061 7 1 6.2363 -0.8140 0.4056 8 6 6.3836 1.1312 -0.5056 9 7 5.7704 1.9848 -1.2854 10 14 8.1836 1.3852 -0.0757 11 1 8.6394 0.2879 0.8150 12 1 8.9949 1.3817 -1.3195 13 1 8.3476 2.6876 0.6187 14 6 3.5768 -1.2096 -0.0002 15 8 4.2534 -2.3853 0.0000 16 6 3.4734 -3.5826 -0.0010 17 6 4.3898 -4.7790 0.0000 18 6 4.8069 -5.3312 -1.1967 19 6 5.6513 -6.4256 -1.1958 20 6 6.0702 -6.9744 0.0019 21 6 5.6490 -6.4254 1.1985 22 6 4.8084 -5.3280 1.1977 23 6 2.1924 -1.2013 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6456 2.1357 0.0004 28 1 4.0864 2.1685 0.0009 29 1 6.2506 2.7491 -1.6405 30 1 2.8439 -3.6068 0.8886 31 1 2.8453 -3.6064 -0.8915 32 1 4.4758 -4.9054 -2.1323 33 1 5.9802 -6.8548 -2.1306 34 1 6.7264 -7.8322 0.0026 35 1 5.9759 -6.8544 2.1342 36 1 4.4789 -4.8994 2.1326 37 1 1.6472 -2.1335 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034309554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:48 Heat of formation + Delta-G solvation = -17.098387 kcal Electronic energy + Delta-G solvation = -19257.236897 eV Core-core repulsion = 16349.382034 eV Total energy + Delta-G solvation = -2907.854864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78250 -39.85519 -37.98990 -35.79672 -33.29039 -32.44700 -31.81940 -30.39792 -29.18076 -27.40756 -25.44331 -23.49702 -23.05902 -22.02163 -21.79087 -19.32416 -18.05612 -17.77182 -17.10212 -16.76475 -16.38784 -15.92133 -15.66908 -15.32936 -14.65599 -14.35380 -14.31990 -14.29576 -14.14790 -13.68085 -13.31760 -13.30914 -13.14921 -12.79437 -12.65283 -12.33985 -12.16092 -11.94298 -11.91938 -11.60654 -11.40781 -11.27306 -10.98120 -9.84510 -9.77861 -9.27018 -8.87305 -8.55703 -6.19344 0.30538 0.47811 0.90911 1.09991 1.35473 1.46684 1.50963 2.22299 2.57358 2.72180 3.16536 3.65891 3.85106 3.87630 4.11339 4.26065 4.28710 4.32018 4.33270 4.46124 4.59007 4.64349 4.73087 4.78121 4.99004 5.03142 5.13251 5.13776 5.15413 5.20311 5.45020 5.51918 5.54719 5.57106 5.66529 5.87175 5.90912 6.08083 6.20291 6.33188 6.53952 6.80529 6.92758 7.23665 8.37313 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.006518 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.077583 B = 4294.836281 C = 6095.896145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.179 4.179 3 C -0.134 4.134 4 C -0.162 4.162 5 C 0.055 3.945 6 C -0.483 4.483 7 H 0.063 0.937 8 C 0.034 3.966 9 N -0.830 5.830 10 Si 0.977 3.023 11 H -0.265 1.265 12 H -0.265 1.265 13 H -0.259 1.259 14 C 0.002 3.998 15 O -0.325 6.325 16 C 0.101 3.899 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.180 4.180 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.287 0.713 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -12.579 2.017 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.180 4.180 3 C -0.153 4.153 4 C -0.182 4.182 5 C 0.053 3.947 6 C -0.513 4.513 7 H 0.081 0.919 8 C -0.179 4.179 9 N -0.458 5.458 10 Si 0.798 3.202 11 H -0.189 1.189 12 H -0.190 1.190 13 H -0.183 1.183 14 C -0.042 4.042 15 O -0.241 6.241 16 C 0.026 3.974 17 C -0.108 4.108 18 C -0.134 4.134 19 C -0.145 4.145 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.132 4.132 23 C -0.199 4.199 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.742 -12.406 1.871 12.666 hybrid contribution 0.522 0.509 -0.048 0.731 sum -1.219 -11.897 1.823 12.098 Atomic orbital electron populations 1.20487 0.89869 1.02042 1.01604 1.19557 0.96560 0.91906 1.09960 1.20563 0.93936 0.97200 1.03552 1.20832 0.93533 0.97194 1.06627 1.17430 0.94085 0.89275 0.93908 1.19494 0.91873 1.03016 1.36928 0.91866 1.26652 1.05063 0.94158 0.92068 1.69887 1.40413 1.12100 1.23379 0.85245 0.76565 0.79231 0.79185 1.18860 1.18984 1.18333 1.19407 0.90828 0.85170 1.08842 1.85997 1.35855 1.12041 1.90212 1.21512 0.92663 0.81827 1.01440 1.19717 1.00421 0.95762 0.94877 1.21277 0.97977 0.96832 0.97307 1.21466 0.97309 0.95889 0.99823 1.21592 0.99355 1.00438 0.91946 1.21475 0.97307 0.95839 0.99792 1.21281 0.97917 0.96778 0.97259 1.20827 0.91901 0.98435 1.08699 0.91699 0.91899 0.91884 0.87063 0.87538 0.90261 0.91644 0.92004 0.86090 0.83462 0.82801 0.83297 0.85757 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.67 10.00 71.24 0.71 -1.96 16 2 C -0.18 -7.73 5.90 -19.71 -0.12 -7.84 16 3 C -0.13 -6.37 9.61 22.00 0.21 -6.16 16 4 C -0.16 -8.88 8.64 22.47 0.19 -8.68 16 5 C 0.06 3.19 5.58 -21.20 -0.12 3.07 16 6 C -0.48 -28.24 8.72 23.40 0.20 -28.03 16 7 H 0.06 3.77 7.66 -2.91 -0.02 3.74 16 8 C 0.03 1.82 5.14 85.24 0.44 2.26 16 9 N -0.83 -45.48 10.98 21.83 0.24 -45.24 16 10 Si 0.98 41.00 29.59 68.60 2.03 43.03 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 13 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 14 C 0.00 0.10 6.72 23.08 0.16 0.26 16 15 O -0.33 -15.96 9.42 -89.60 -0.84 -16.80 16 16 C 0.10 3.73 4.87 71.24 0.35 4.07 16 17 C -0.11 -3.54 5.51 -19.86 -0.11 -3.65 16 18 C -0.12 -3.43 9.70 22.27 0.22 -3.21 16 19 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 20 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 21 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 22 C -0.11 -3.30 9.70 22.27 0.22 -3.09 16 23 C -0.18 -8.12 8.67 22.33 0.19 -7.92 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 26 H 0.06 1.80 8.08 -2.38 -0.02 1.78 16 27 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.11 6.06 6.19 -2.91 -0.02 6.04 16 29 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 30 H 0.07 2.23 7.61 -2.38 -0.02 2.21 16 31 H 0.06 2.16 7.61 -2.39 -0.02 2.14 16 32 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.12 4.72 6.31 -2.91 -0.02 4.71 16 Total: -1.00 -66.81 316.53 5.70 -61.11 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 1.06 Total: 26.44 kcal Atomic # 6 Polarization: -71.75 SS G_CDS: 3.22 Total: -68.53 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.24 Total: -45.24 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.84 Total: -16.80 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -66.81 5.70 -61.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034309554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.014 kcal (2) G-P(sol) polarization free energy of solvation -66.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds