Wall clock time and date at job start Mon Mar 30 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35883 * 116.99692 * 2 1 4 4 C 1.39862 * 119.58381 * 0.02735 * 3 2 1 5 5 C 1.35989 * 120.91053 * 179.97438 * 4 3 2 6 6 C 1.40578 * 119.76031 * 359.97438 * 5 4 3 7 7 C 1.40519 * 121.21762 * 180.02562 * 6 5 4 8 8 C 1.36110 * 119.69477 * 179.97438 * 7 6 5 9 9 C 1.39390 * 120.97245 * 0.28941 * 8 7 6 10 10 C 1.36059 * 120.95239 * 359.44126 * 9 8 7 11 11 C 1.40543 * 119.73527 * 0.55896 * 10 9 8 12 12 C 1.36541 * 119.58020 * 179.97438 * 3 2 1 13 13 C 1.50688 * 120.07154 * 0.03760 * 12 3 2 14 14 C 1.53073 * 109.36103 * 209.55820 * 13 12 3 15 15 C 1.50698 * 120.06188 * 180.27896 * 10 9 8 16 16 H 1.08998 * 109.49076 * 270.64086 * 15 10 9 17 17 C 1.50703 * 109.49345 * 30.69000 * 15 10 9 18 18 H 1.07998 * 119.99667 * 35.18262 * 17 15 10 19 19 C 1.37870 * 120.00105 * 215.18386 * 17 15 10 20 20 N 1.31518 * 120.00012 * 6.89972 * 19 17 15 21 21 Si 1.86805 * 120.00149 * 186.89981 * 19 17 15 22 22 H 1.48500 * 109.46993 * 89.99987 * 21 19 17 23 23 H 1.48498 * 109.47329 * 209.99950 * 21 19 17 24 24 H 1.48495 * 109.46971 * 330.00102 * 21 19 17 25 25 H 1.09001 * 109.46865 * 299.98990 * 1 2 3 26 26 H 1.08995 * 109.47446 * 59.99871 * 1 2 3 27 27 H 1.09005 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.54764 * 359.94384 * 4 3 2 29 29 H 1.08001 * 120.11519 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.15688 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.50882 * 180.02562 * 8 7 6 32 32 H 1.08004 * 119.52017 * 179.78861 * 9 8 7 33 33 H 1.09001 * 109.48493 * 89.58751 * 13 12 3 34 34 H 1.08999 * 109.50533 * 329.53955 * 13 12 3 35 35 H 1.09000 * 109.50750 * 181.62026 * 14 13 12 36 36 H 1.08995 * 109.54957 * 61.50481 * 14 13 12 37 37 H 0.97002 * 119.99878 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2755 2.3781 0.0006 5 6 1.8646 3.6038 0.0011 6 6 3.2668 3.7041 0.0016 7 6 3.9076 4.9547 0.0027 8 6 5.2673 5.0156 0.0037 9 6 6.0374 3.8538 -0.0023 10 6 5.4516 2.6259 0.0019 11 6 4.0500 2.5222 0.0007 12 6 3.4099 1.2723 0.0005 13 6 4.2229 0.0036 0.0003 14 6 5.5541 0.2538 0.7133 15 6 6.3037 1.3829 0.0016 16 1 6.5154 1.0875 -1.0260 17 6 7.5980 1.6603 0.7219 18 1 7.6102 2.3237 1.5740 19 6 8.7664 1.0672 0.2931 20 7 8.7790 0.3693 -0.8216 21 14 10.3316 1.2547 1.2954 22 1 10.4237 0.1480 2.2813 23 1 11.5077 1.2100 0.3898 24 1 10.3077 2.5552 2.0119 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.1980 2.3052 0.0001 29 1 1.2573 4.4969 0.0011 30 1 3.3238 5.8633 0.0036 31 1 5.7566 5.9784 0.0050 32 1 7.1148 3.9296 -0.0049 33 1 4.4133 -0.3060 -1.0274 34 1 3.6735 -0.7809 0.5206 35 1 6.1563 -0.6544 0.6893 36 1 5.3656 0.5383 1.7484 37 1 9.6010 -0.0483 -1.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034417180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:18 Heat of formation + Delta-G solvation = -10.492078 kcal Electronic energy + Delta-G solvation = -20123.981822 eV Core-core repulsion = 17216.413429 eV Total energy + Delta-G solvation = -2907.568393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49304 -38.55235 -35.72261 -35.14364 -32.62994 -30.23197 -29.80131 -29.19878 -27.29254 -25.66379 -23.99708 -22.23523 -21.73673 -21.54820 -18.38605 -17.94438 -16.56995 -16.45143 -15.99760 -15.54795 -14.90420 -14.68172 -14.12343 -13.96047 -13.41932 -13.00169 -12.64111 -12.52784 -12.45246 -12.31908 -12.00123 -11.57827 -11.34014 -11.17925 -10.95698 -10.80232 -10.71450 -10.45262 -10.25186 -10.07096 -9.83777 -9.12831 -8.99989 -8.70617 -8.44347 -7.79624 -6.88844 -6.06387 -4.08981 1.12621 1.60740 2.68333 3.29289 3.36618 3.39421 3.55756 3.57486 4.40010 4.74423 4.94049 5.10016 5.15662 5.19807 5.24827 5.45271 5.47577 5.50422 5.61072 5.87271 5.95489 6.01091 6.09010 6.18406 6.26648 6.44318 6.55938 6.63489 6.81619 6.83620 6.86305 7.04995 7.07186 7.14869 7.24745 7.44659 7.67823 7.70949 7.80182 7.84775 7.90091 8.38006 8.99157 9.53907 11.02230 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.006410 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.285608 B = 4367.271687 C = 5403.173503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.093 3.907 4 C -0.188 4.188 5 C -0.087 4.087 6 C -0.075 4.075 7 C -0.139 4.139 8 C -0.111 4.111 9 C -0.114 4.114 10 C -0.027 4.027 11 C -0.024 4.024 12 C -0.082 4.082 13 C -0.075 4.075 14 C -0.099 4.099 15 C 0.062 3.938 16 H 0.080 0.920 17 C -0.509 4.509 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 3.566 0.749 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.049 3.951 4 C -0.206 4.206 5 C -0.105 4.105 6 C -0.075 4.075 7 C -0.158 4.158 8 C -0.130 4.130 9 C -0.132 4.132 10 C -0.028 4.028 11 C -0.024 4.024 12 C -0.083 4.083 13 C -0.112 4.112 14 C -0.138 4.138 15 C 0.044 3.956 16 H 0.097 0.903 17 C -0.547 4.547 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.603 3.264 0.628 14.003 hybrid contribution 0.468 0.316 0.525 0.770 sum -13.135 3.580 1.153 13.663 Atomic orbital electron populations 1.22942 0.79600 1.03248 1.00770 1.86083 1.20274 1.27101 1.89528 1.18347 0.91630 0.83784 1.01333 1.20835 0.99322 0.92555 1.07921 1.20699 0.93572 0.96738 0.99533 1.17998 0.92864 0.93390 1.03213 1.20692 0.94833 0.95574 1.04652 1.20907 0.93856 0.98418 0.99771 1.20966 1.01138 0.91163 0.99910 1.20605 0.91193 0.98019 0.92948 1.17761 0.93749 0.91008 0.99881 1.19127 0.90299 0.95783 1.03096 1.20515 0.96350 0.92977 1.01387 1.21693 0.92969 1.00707 0.98389 1.18081 0.91386 0.86931 0.99205 0.90279 1.21022 0.91466 1.28239 1.13978 0.92369 1.24978 0.98866 0.95147 0.94586 1.69914 1.27962 1.34324 1.20614 0.86620 0.82779 0.78664 0.80137 1.20573 1.21279 1.19791 0.93202 0.93165 0.88794 0.86151 0.86103 0.86875 0.87013 0.84761 0.91143 0.91700 0.91858 0.93672 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.80 101.05 0.99 1.30 16 2 O -0.32 -4.98 9.44 -19.37 -0.18 -5.16 16 3 C 0.09 1.62 6.61 -39.59 -0.26 1.36 16 4 C -0.19 -2.82 8.94 -39.78 -0.36 -3.18 16 5 C -0.09 -1.34 9.76 -39.51 -0.39 -1.73 16 6 C -0.07 -1.36 5.74 -106.80 -0.61 -1.97 16 7 C -0.14 -2.33 9.77 -39.49 -0.39 -2.71 16 8 C -0.11 -1.96 9.95 -39.92 -0.40 -2.36 16 9 C -0.11 -2.40 8.97 -39.94 -0.36 -2.76 16 10 C -0.03 -0.62 5.48 -104.54 -0.57 -1.19 16 11 C -0.02 -0.50 5.66 -106.85 -0.60 -1.10 16 12 C -0.08 -1.64 5.69 -104.42 -0.59 -2.24 16 13 C -0.08 -1.52 5.61 -27.85 -0.16 -1.67 16 14 C -0.10 -2.26 5.20 -26.66 -0.14 -2.40 16 15 C 0.06 1.54 2.45 -92.89 -0.23 1.31 16 16 H 0.08 2.18 7.22 -51.93 -0.37 1.81 16 17 C -0.51 -13.49 6.78 -34.44 -0.23 -13.72 16 18 H 0.06 1.54 7.64 -52.49 -0.40 1.14 16 19 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 20 N -0.89 -25.10 12.76 55.43 0.71 -24.40 16 21 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.05 0.47 7.64 -51.93 -0.40 0.07 16 26 H 0.05 0.47 7.63 -51.93 -0.40 0.07 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.12 1.41 6.22 -52.49 -0.33 1.08 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.13 2.94 6.96 -52.48 -0.37 2.57 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.06 1.21 7.49 -51.93 -0.39 0.83 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -29.14 300.76 -9.10 -38.24 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.74 Total: 2.36 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: -4.39 Total: -31.37 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.71 Total: -24.40 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.18 Total: -5.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.14 -9.10 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034417180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.751 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds