Wall clock time and date at job start Mon Mar 30 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35883 * 116.99692 * 2 1 4 4 C 1.39862 * 119.58381 * 0.02735 * 3 2 1 5 5 C 1.35989 * 120.91053 * 179.97438 * 4 3 2 6 6 C 1.40578 * 119.76031 * 359.97438 * 5 4 3 7 7 C 1.40519 * 121.21762 * 180.02562 * 6 5 4 8 8 C 1.36110 * 119.69477 * 179.97438 * 7 6 5 9 9 C 1.39390 * 120.97245 * 0.28941 * 8 7 6 10 10 C 1.36059 * 120.95239 * 359.44126 * 9 8 7 11 11 C 1.40543 * 119.73527 * 0.55896 * 10 9 8 12 12 C 1.36541 * 119.58020 * 179.97438 * 3 2 1 13 13 C 1.50688 * 120.07154 * 0.03760 * 12 3 2 14 14 C 1.53073 * 109.36103 * 209.55820 * 13 12 3 15 15 C 1.50698 * 120.06188 * 180.27896 * 10 9 8 16 16 H 1.08998 * 109.49076 * 270.64086 * 15 10 9 17 17 C 1.50703 * 109.49345 * 30.69000 * 15 10 9 18 18 H 1.07998 * 119.99667 * 35.18262 * 17 15 10 19 19 C 1.37870 * 120.00105 * 215.18386 * 17 15 10 20 20 N 1.31518 * 120.00012 * 6.89972 * 19 17 15 21 21 Si 1.86805 * 120.00149 * 186.89981 * 19 17 15 22 22 H 1.48500 * 109.46993 * 89.99987 * 21 19 17 23 23 H 1.48498 * 109.47329 * 209.99950 * 21 19 17 24 24 H 1.48495 * 109.46971 * 330.00102 * 21 19 17 25 25 H 1.09001 * 109.46865 * 299.98990 * 1 2 3 26 26 H 1.08995 * 109.47446 * 59.99871 * 1 2 3 27 27 H 1.09005 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.54764 * 359.94384 * 4 3 2 29 29 H 1.08001 * 120.11519 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.15688 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.50882 * 180.02562 * 8 7 6 32 32 H 1.08004 * 119.52017 * 179.78861 * 9 8 7 33 33 H 1.09001 * 109.48493 * 89.58751 * 13 12 3 34 34 H 1.08999 * 109.50533 * 329.53955 * 13 12 3 35 35 H 1.09000 * 109.50750 * 181.62026 * 14 13 12 36 36 H 1.08995 * 109.54957 * 61.50481 * 14 13 12 37 37 H 0.97002 * 119.99878 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2755 2.3781 0.0006 5 6 1.8646 3.6038 0.0011 6 6 3.2668 3.7041 0.0016 7 6 3.9076 4.9547 0.0027 8 6 5.2673 5.0156 0.0037 9 6 6.0374 3.8538 -0.0023 10 6 5.4516 2.6259 0.0019 11 6 4.0500 2.5222 0.0007 12 6 3.4099 1.2723 0.0005 13 6 4.2229 0.0036 0.0003 14 6 5.5541 0.2538 0.7133 15 6 6.3037 1.3829 0.0016 16 1 6.5154 1.0875 -1.0260 17 6 7.5980 1.6603 0.7219 18 1 7.6102 2.3237 1.5740 19 6 8.7664 1.0672 0.2931 20 7 8.7790 0.3693 -0.8216 21 14 10.3316 1.2547 1.2954 22 1 10.4237 0.1480 2.2813 23 1 11.5077 1.2100 0.3898 24 1 10.3077 2.5552 2.0119 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.1980 2.3052 0.0001 29 1 1.2573 4.4969 0.0011 30 1 3.3238 5.8633 0.0036 31 1 5.7566 5.9784 0.0050 32 1 7.1148 3.9296 -0.0049 33 1 4.4133 -0.3060 -1.0274 34 1 3.6735 -0.7809 0.5206 35 1 6.1563 -0.6544 0.6893 36 1 5.3656 0.5383 1.7484 37 1 9.6010 -0.0483 -1.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034417180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:18 Heat of formation + Delta-G solvation = -25.516248 kcal Electronic energy + Delta-G solvation = -20124.633319 eV Core-core repulsion = 17216.413429 eV Total energy + Delta-G solvation = -2908.219890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86294 -39.83403 -37.34364 -36.48943 -34.54320 -31.80791 -31.33923 -30.56420 -28.49091 -27.20953 -25.67561 -23.75494 -23.19997 -23.08043 -19.99931 -19.21102 -18.44693 -17.82383 -17.46333 -16.64704 -16.50827 -16.25211 -15.75942 -15.28025 -14.78642 -14.39525 -14.19861 -14.12593 -13.87660 -13.85937 -13.36091 -13.15918 -12.82218 -12.71322 -12.53123 -12.40256 -12.20715 -12.13427 -11.86976 -11.70566 -11.30583 -10.96305 -10.76293 -10.61631 -10.17942 -9.16747 -8.34475 -8.11759 -6.23375 -0.22608 0.22850 1.26759 1.40195 1.41428 1.51632 2.19024 2.41907 2.48935 3.13479 3.30314 3.73006 3.92520 4.07540 4.14929 4.29928 4.40321 4.45926 4.47075 4.50136 4.54018 4.60540 4.64511 4.70516 4.77542 4.99323 5.04297 5.15099 5.22785 5.31528 5.41260 5.43533 5.47946 5.54977 5.64886 5.75593 5.80211 5.95251 6.11893 6.27329 6.41536 6.56058 6.89876 7.41850 8.94404 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.006410 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.285608 B = 4367.271687 C = 5403.173503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.111 3.889 4 C -0.188 4.188 5 C -0.069 4.069 6 C -0.097 4.097 7 C -0.113 4.113 8 C -0.126 4.126 9 C -0.123 4.123 10 C -0.072 4.072 11 C -0.040 4.040 12 C -0.134 4.134 13 C -0.061 4.061 14 C -0.090 4.090 15 C 0.064 3.936 16 H 0.034 0.966 17 C -0.515 4.515 18 H 0.051 0.949 19 C 0.015 3.985 20 N -0.927 5.927 21 Si 0.954 3.046 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.266 1.266 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.330 5.806 1.506 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.206 4.206 5 C -0.086 4.086 6 C -0.097 4.097 7 C -0.131 4.131 8 C -0.144 4.144 9 C -0.141 4.141 10 C -0.072 4.072 11 C -0.040 4.040 12 C -0.135 4.135 13 C -0.098 4.098 14 C -0.128 4.128 15 C 0.046 3.954 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.069 0.931 19 C -0.183 4.183 20 N -0.566 5.566 21 Si 0.780 3.220 22 H -0.201 1.201 23 H -0.208 1.208 24 H -0.190 1.190 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.181 0.819 29 H 0.186 0.814 30 H 0.179 0.821 31 H 0.161 0.839 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.138 5.503 1.394 18.053 hybrid contribution 1.323 -0.373 0.273 1.402 sum -15.815 5.130 1.667 16.709 Atomic orbital electron populations 1.23353 0.76541 1.05419 1.02380 1.86069 1.23438 1.26678 1.88899 1.18516 0.90946 0.85440 0.98459 1.21268 1.01298 0.91324 1.06674 1.21202 0.92270 0.98680 0.96456 1.18393 0.94516 0.92911 1.03890 1.21211 0.94522 0.96678 1.00672 1.21117 0.94618 0.98137 1.00554 1.20955 1.00410 0.92431 1.00296 1.20402 0.92501 0.97214 0.97073 1.17892 0.93011 0.92762 1.00328 1.19072 0.91831 0.94921 1.07695 1.20266 0.95067 0.94424 1.00076 1.21475 0.94270 0.98957 0.98128 1.17857 0.91859 0.89140 0.96572 0.94758 1.21253 0.92733 1.27641 1.13657 0.93059 1.25750 1.02021 0.94993 0.95536 1.70057 1.28696 1.35651 1.22206 0.85609 0.78922 0.78844 0.78663 1.20111 1.20822 1.18990 0.91441 0.91447 0.86681 0.81863 0.81378 0.82093 0.83893 0.87216 0.92694 0.90637 0.94191 0.94277 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.80 113.37 1.11 1.40 16 2 O -0.34 -9.86 9.44 -92.23 -0.87 -10.73 16 3 C 0.11 3.65 6.61 22.27 0.15 3.80 16 4 C -0.19 -4.73 8.94 22.14 0.20 -4.53 16 5 C -0.07 -1.73 9.76 22.32 0.22 -1.52 16 6 C -0.10 -3.27 5.74 -21.28 -0.12 -3.39 16 7 C -0.11 -3.35 9.77 22.33 0.22 -3.13 16 8 C -0.13 -4.27 9.95 22.05 0.22 -4.05 16 9 C -0.12 -5.40 8.97 22.04 0.20 -5.20 16 10 C -0.07 -3.43 5.48 -19.81 -0.11 -3.54 16 11 C -0.04 -1.68 5.66 -21.31 -0.12 -1.80 16 12 C -0.13 -5.45 5.69 -19.73 -0.11 -5.56 16 13 C -0.06 -2.64 5.61 29.87 0.17 -2.47 16 14 C -0.09 -4.46 5.20 30.64 0.16 -4.30 16 15 C 0.06 3.46 2.45 -12.26 -0.03 3.43 16 16 H 0.03 2.11 7.22 -2.39 -0.02 2.09 16 17 C -0.51 -29.22 6.78 25.60 0.17 -29.04 16 18 H 0.05 2.90 7.64 -2.91 -0.02 2.88 16 19 C 0.02 0.88 5.45 84.65 0.46 1.34 16 20 N -0.93 -55.67 12.76 21.45 0.27 -55.40 16 21 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H 0.07 0.93 7.64 -2.39 -0.02 0.91 16 26 H 0.07 0.93 7.63 -2.39 -0.02 0.91 16 27 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.16 2.70 6.22 -2.91 -0.02 2.68 16 29 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.11 5.18 6.96 -2.91 -0.02 5.16 16 33 H 0.05 2.43 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.96 7.49 -2.39 -0.02 2.95 16 35 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -69.51 300.76 5.28 -64.23 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.07 Total: 13.94 kcal Atomic # 6 Polarization: -61.34 SS G_CDS: 2.78 Total: -58.57 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.27 Total: -55.40 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.87 Total: -10.73 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.51 5.28 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034417180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.718 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds