Wall clock time and date at job start Mon Mar 30 2020 07:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35884 * 117.00013 * 2 1 4 4 C 1.39872 * 119.58341 * 359.72784 * 3 2 1 5 5 C 1.35978 * 120.91201 * 179.75373 * 4 3 2 6 6 C 1.40584 * 119.75808 * 0.49317 * 5 4 3 7 7 C 1.40526 * 121.22170 * 179.77946 * 6 5 4 8 8 C 1.36103 * 119.69610 * 180.09445 * 7 6 5 9 9 C 1.39380 * 120.97512 * 359.95799 * 8 7 6 10 10 C 1.36064 * 120.95951 * 0.02562 * 9 8 7 11 11 C 1.40544 * 119.72165 * 359.97438 * 10 9 8 12 12 C 1.36534 * 119.58718 * 179.97438 * 3 2 1 13 13 C 1.50688 * 120.06706 * 359.93969 * 12 3 2 14 14 C 1.53098 * 109.33832 * 150.34160 * 13 12 3 15 15 C 1.50697 * 120.06454 * 180.02562 * 10 9 8 16 16 H 1.08994 * 109.48801 * 89.52023 * 15 10 9 17 17 C 1.50699 * 109.48920 * 329.47182 * 15 10 9 18 18 H 1.08005 * 120.00088 * 324.87016 * 17 15 10 19 19 C 1.37872 * 119.99808 * 144.86359 * 17 15 10 20 20 N 1.31515 * 120.00295 * 5.07459 * 19 17 15 21 21 Si 1.86804 * 120.00152 * 185.07546 * 19 17 15 22 22 H 1.48494 * 109.47007 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47073 * 120.00326 * 21 19 17 24 24 H 1.48496 * 109.46965 * 240.00069 * 21 19 17 25 25 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47570 * 299.99715 * 1 2 3 27 27 H 1.09003 * 109.47441 * 59.99996 * 1 2 3 28 28 H 1.07999 * 119.53845 * 359.97438 * 4 3 2 29 29 H 1.07999 * 120.12316 * 180.26388 * 5 4 3 30 30 H 1.08002 * 120.14636 * 0.11282 * 7 6 5 31 31 H 1.07998 * 119.50554 * 179.97438 * 8 7 6 32 32 H 1.08006 * 119.51912 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.49212 * 270.32354 * 13 12 3 34 34 H 1.09004 * 109.49109 * 30.39649 * 13 12 3 35 35 H 1.08997 * 109.52211 * 298.57546 * 14 13 12 36 36 H 1.08996 * 109.50515 * 178.43358 * 14 13 12 37 37 H 0.97002 * 120.00500 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2756 2.3782 -0.0058 5 6 1.8646 3.6038 -0.0009 6 6 3.2669 3.7040 -0.0004 7 6 3.9078 4.9546 -0.0001 8 6 5.2675 5.0155 -0.0016 9 6 6.0375 3.8537 -0.0026 10 6 5.4517 2.6256 -0.0026 11 6 4.0501 2.5222 -0.0011 12 6 3.4098 1.2724 0.0005 13 6 4.2229 0.0036 0.0025 14 6 5.5537 0.2532 -0.7121 15 6 6.3038 1.3827 -0.0031 16 1 6.5168 1.0875 1.0243 17 6 7.5971 1.6601 -0.7251 18 1 7.6085 2.3241 -1.5768 19 6 8.7659 1.0663 -0.2982 20 7 8.7370 0.1817 0.6746 21 14 10.3907 1.5181 -1.1016 22 1 10.1539 2.5301 -2.1622 23 1 11.3095 2.0794 -0.0788 24 1 11.0004 0.3045 -1.7020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.1981 2.3052 -0.0106 29 1 1.2575 4.4970 -0.0012 30 1 3.3240 5.8633 0.0016 31 1 5.7568 5.9782 -0.0017 32 1 7.1149 3.9294 -0.0042 33 1 4.4138 -0.3044 1.0304 34 1 3.6731 -0.7815 -0.5167 35 1 5.3637 0.5373 -1.7471 36 1 6.1557 -0.6551 -0.6879 37 1 9.5593 -0.2363 0.9747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034417181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:21 Heat of formation + Delta-G solvation = -10.723280 kcal Electronic energy + Delta-G solvation = -20127.257255 eV Core-core repulsion = 17219.678837 eV Total energy + Delta-G solvation = -2907.578418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49496 -38.55394 -35.72056 -35.14699 -32.62715 -30.23880 -29.78809 -29.20125 -27.29132 -25.66282 -24.00653 -22.22952 -21.72888 -21.55009 -18.37393 -17.94661 -16.57643 -16.45456 -16.00058 -15.54649 -14.91398 -14.67547 -14.11158 -13.96082 -13.41817 -13.00284 -12.64531 -12.54272 -12.44028 -12.33563 -11.99871 -11.54452 -11.35030 -11.15787 -10.96327 -10.80294 -10.70948 -10.43234 -10.23656 -10.07088 -9.83616 -9.15731 -9.06192 -8.63550 -8.42703 -7.80209 -6.89162 -6.06380 -4.09734 1.12248 1.60222 2.67731 3.27785 3.36639 3.40609 3.55228 3.57687 4.39935 4.73832 4.93995 5.09975 5.15797 5.19988 5.25167 5.45046 5.47752 5.49947 5.61062 5.87267 5.95594 6.00635 6.09251 6.19340 6.28039 6.44211 6.56273 6.64670 6.81692 6.84061 6.85952 7.06122 7.09485 7.14589 7.25908 7.46186 7.67709 7.69774 7.80483 7.84508 7.90790 8.37878 8.98464 9.53993 11.02380 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.006420 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.478664 B = 4360.218719 C = 5423.711994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.093 3.907 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.075 4.075 7 C -0.139 4.139 8 C -0.112 4.112 9 C -0.115 4.115 10 C -0.028 4.028 11 C -0.024 4.024 12 C -0.082 4.082 13 C -0.076 4.076 14 C -0.098 4.098 15 C 0.065 3.935 16 H 0.075 0.925 17 C -0.508 4.508 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 3.993 -0.431 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.049 3.951 4 C -0.206 4.206 5 C -0.106 4.106 6 C -0.075 4.075 7 C -0.157 4.157 8 C -0.130 4.130 9 C -0.133 4.133 10 C -0.029 4.029 11 C -0.024 4.024 12 C -0.083 4.083 13 C -0.113 4.113 14 C -0.136 4.136 15 C 0.047 3.953 16 H 0.092 0.908 17 C -0.546 4.546 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.524 3.678 -0.327 14.019 hybrid contribution 0.503 0.455 -0.400 0.788 sum -13.020 4.133 -0.728 13.680 Atomic orbital electron populations 1.22942 0.79603 1.03254 1.00764 1.86084 1.20268 1.27091 1.89519 1.18352 0.91639 0.83785 1.01322 1.20838 0.99329 0.92557 1.07874 1.20695 0.93565 0.96741 0.99572 1.18002 0.92873 0.93387 1.03208 1.20695 0.94833 0.95580 1.04594 1.20900 0.93863 0.98410 0.99810 1.20960 1.01112 0.91181 1.00017 1.20628 0.91254 0.98026 0.92952 1.17756 0.93733 0.91014 0.99864 1.19145 0.90311 0.95822 1.03004 1.20532 0.96423 0.92915 1.01397 1.21656 0.92856 1.00912 0.98199 1.18026 0.91474 0.86825 0.98979 0.90764 1.21066 0.91407 1.27855 1.14281 0.92291 1.24987 0.99120 0.94679 0.94909 1.69940 1.27762 1.26888 1.28149 0.86570 0.83831 0.78471 0.79402 1.19617 1.20929 1.21026 0.88788 0.93172 0.93203 0.86148 0.86100 0.86869 0.87007 0.84799 0.91157 0.91720 0.93804 0.91526 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.80 101.05 0.99 1.31 16 2 O -0.32 -4.99 9.44 -19.37 -0.18 -5.17 16 3 C 0.09 1.63 6.61 -39.59 -0.26 1.36 16 4 C -0.19 -2.82 8.94 -39.78 -0.36 -3.17 16 5 C -0.09 -1.34 9.76 -39.51 -0.39 -1.73 16 6 C -0.07 -1.36 5.74 -106.80 -0.61 -1.97 16 7 C -0.14 -2.31 9.77 -39.49 -0.39 -2.70 16 8 C -0.11 -1.96 9.95 -39.92 -0.40 -2.35 16 9 C -0.11 -2.40 8.97 -39.94 -0.36 -2.76 16 10 C -0.03 -0.64 5.48 -104.54 -0.57 -1.21 16 11 C -0.02 -0.49 5.66 -106.85 -0.60 -1.09 16 12 C -0.08 -1.64 5.69 -104.42 -0.59 -2.24 16 13 C -0.08 -1.54 5.62 -27.84 -0.16 -1.69 16 14 C -0.10 -2.25 5.20 -26.68 -0.14 -2.39 16 15 C 0.07 1.61 2.36 -92.93 -0.22 1.39 16 16 H 0.07 2.04 7.38 -51.93 -0.38 1.66 16 17 C -0.51 -13.46 6.78 -34.44 -0.23 -13.69 16 18 H 0.06 1.57 7.63 -52.48 -0.40 1.17 16 19 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 20 N -0.89 -25.05 12.84 55.43 0.71 -24.34 16 21 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.05 0.47 7.62 -51.93 -0.40 0.07 16 28 H 0.12 1.41 6.22 -52.49 -0.33 1.08 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.13 2.88 6.95 -52.48 -0.36 2.52 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.22 7.49 -51.93 -0.39 0.83 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -29.16 300.88 -9.09 -38.26 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.75 Total: 2.25 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -4.38 Total: -31.27 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.71 Total: -24.34 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.18 Total: -5.17 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.16 -9.09 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034417181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.533 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds